diff --git a/bin/rios_subproc.py b/bin/rios_subproc.py
deleted file mode 100755
index 84730aa0..00000000
--- a/bin/rios_subproc.py
+++ /dev/null
@@ -1,48 +0,0 @@
-#!/usr/bin/env python
-"""
-Main program for RIOS subprocesses. 
-
-"""
-# This file is part of RIOS - Raster I/O Simplification
-# Copyright (C) 2012  Sam Gillingham, Neil Flood
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
-from __future__ import print_function
-
-from rios.parallel import subproc
-
-import sys
-
-if __name__ == "__main__":
-    nArgs = len(sys.argv) - 1
-
-    # This is for the case of no commandline args    
-    if sys.version_info[0] > 2:
-        # For Python 3, use binary buffer objects
-        # otherwise unpickling fails
-        inf = sys.stdin.buffer
-        outf = sys.stdout.buffer
-    else:
-        inf = sys.stdin
-        outf = sys.stdout
-    
-    # These are for the cases with some commandline args
-    inFileName = None
-    if nArgs >= 1:
-        inFileName = sys.argv[1]
-        inf = open(inFileName, 'rb')
-    if nArgs == 2:
-        outf = open(sys.argv[2], 'wb')
-
-    subproc.runJob(inf, outf, inFileName)
diff --git a/bin/rios_subproc_awsbatch.py b/bin/rios_subproc_awsbatch.py
deleted file mode 100755
index 7991bc76..00000000
--- a/bin/rios_subproc_awsbatch.py
+++ /dev/null
@@ -1,112 +0,0 @@
-#!/usr/bin/env python
-"""
-Main program for RIOS subprocesses invoked via AWS Batch. 
-
-"""
-# This file is part of RIOS - Raster I/O Simplification
-# Copyright (C) 2012  Sam Gillingham, Neil Flood
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
-from __future__ import print_function
-
-import os
-import io
-import time
-import boto3
-
-from rios.parallel import subproc
-
-# These vars are set in the container environment
-# by CloudFormation
-BUCKET = os.getenv("RIOSBucket")
-INQUEUE = os.getenv("RIOSInQueue")
-OUTQUEUE = os.getenv("RIOSOutQueue")
-DFLT_NOMSG_TIMEOUT_SECS = 60 * 60  # 1 hour
-NOMSG_TIMEOUT_SECS = int(os.getenv('RIOS_NOMSG_TIMEOUT', 
-    default=DFLT_NOMSG_TIMEOUT_SECS))
-
-# keep a track of the last time we got a message
-# - if too long we can assume the main script exited
-# and exit ourselves
-LAST_MESSAGE_TIME = time.time()
-
-
-def main():
-
-    global LAST_MESSAGE_TIME
-    
-    s3Client = boto3.client('s3')
-    # SQS client needs a region - should be same as s3 bucket
-    response = s3Client.get_bucket_location(Bucket=BUCKET)
-    region = response['LocationConstraint']
-    sqsClient = boto3.client('sqs', region_name=region)
-    
-    while True:
-        # get a message from the queue
-        resp = sqsClient.receive_message(QueueUrl=INQUEUE,
-            MaxNumberOfMessages=1, WaitTimeSeconds=20)  # must be <= 20
-        if 'Messages' in resp and len(resp['Messages']) > 0:
-            # we got something
-            LAST_MESSAGE_TIME = time.time()
-
-            # just look at the first one (just asked for 1)
-            msg = resp['Messages'][0]
-            body = msg['Body']
-            receiptHandle = msg['ReceiptHandle']
-            sqsClient.delete_message(
-                QueueUrl=INQUEUE, ReceiptHandle=receiptHandle)
-                 
-            # message from the main script to exit
-            if body == 'Stop':
-                print('Job Exiting')
-                break
-
-            print('Started', body)
-                 
-            # get the info out of the pkl filename
-            bl, x, y, o = body.split('_')
-            outfile = 'block_{}_{}_out.pkl'.format(x, y)
-             
-            # read the input pkl
-            inPkl = io.BytesIO()
-            s3Client.download_fileobj(BUCKET, body, inPkl)
-            inPkl.seek(0)
-             
-            # delete it
-            s3Client.delete_object(Bucket=BUCKET, Key=body)
-             
-            # run the job
-            outPkl = io.BytesIO()
-            subproc.runJob(inPkl, outPkl)
-
-            # upload the result
-            outPkl.seek(0)             
-            s3Client.upload_fileobj(outPkl, BUCKET, outfile)
-             
-            # send message back to main script
-            sqsClient.send_message(QueueUrl=OUTQUEUE,
-                MessageBody=outfile)
-
-            print('finished', body)
-        elif ((time.time() - LAST_MESSAGE_TIME) > 
-                NOMSG_TIMEOUT_SECS):
-            print('No message received within timeout. Exiting')
-            break
-        else:
-            # sleep for a bit before checking again
-            time.sleep(30)
-
-
-if __name__ == '__main__':
-    main()
diff --git a/bin/rios_subproc_mpi.py b/bin/rios_subproc_mpi.py
deleted file mode 100755
index 216e8e63..00000000
--- a/bin/rios_subproc_mpi.py
+++ /dev/null
@@ -1,60 +0,0 @@
-#!/usr/bin/env python
-"""
-Main program for RIOS MPI subprocesses. 
-This uses the MPI calls to receive and send data
-from the main process.
-
-"""
-# This file is part of RIOS - Raster I/O Simplification
-# Copyright (C) 2012  Sam Gillingham, Neil Flood
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
-from __future__ import print_function
-
-from mpi4py import MPI
-from rios.parallel import subproc
-
-from io import BytesIO
-
-if __name__ == "__main__":
-
-    # get the handle to the parent
-    comm = MPI.Comm.Get_parent()
-
-    # keep going until we are told to exit
-    while True:
-        # get the data from the parent
-        data = comm.recv(source=0)
-
-        status, blockData = data
-        if not status:
-            comm.Disconnect()
-            break
-
-        # wrap it with a BytesIO object so it can be treated
-        # like a file by subproc.runJob() - this keeps compatibility
-        # with the other sub job types
-        inf = BytesIO(blockData)
-        inf.seek(0)
-
-        # output file object
-        outf = BytesIO()
-
-        # do the processing
-        subproc.runJob(inf, outf)
-
-        # send the result back
-        outdata = outf.getvalue()
-        comm.send(outdata, dest=0)
-
diff --git a/bin/rioscalcstats.py b/bin/rioscalcstats.py
deleted file mode 100755
index 60fba89c..00000000
--- a/bin/rioscalcstats.py
+++ /dev/null
@@ -1,11 +0,0 @@
-#!/usr/bin/env python
-"""
-Use rios.calcstats to calculate statistics for the given image(s). 
-
-"""
-
-from rios.cmdline import rioscalcstats
-import warnings
-warnings.warn("Future versions of RIOS may remove the .py extension from this script name", DeprecationWarning)
-
-rioscalcstats.main()
diff --git a/bin/riosprintstats.py b/bin/riosprintstats.py
deleted file mode 100755
index 86ad165f..00000000
--- a/bin/riosprintstats.py
+++ /dev/null
@@ -1,11 +0,0 @@
-#!/usr/bin/env python
-"""
-Use rios.fileinfo to print the statistics for the given image(s). 
-
-"""
-
-from rios.cmdline import riosprintstats
-import warnings
-warnings.warn("Future versions of RIOS may remove the .py extension from this script name", DeprecationWarning)
-
-riosprintstats.main()
diff --git a/bin/testrios.py b/bin/testrios.py
deleted file mode 100755
index 28e90503..00000000
--- a/bin/testrios.py
+++ /dev/null
@@ -1,38 +0,0 @@
-#!/usr/bin/env python
-"""
-Main test harness for RIOS. 
-
-Should be run as a main program. It then runs a selection 
-of tests of some capabilities of RIOS. 
-
-"""
-# This file is part of RIOS - Raster I/O Simplification
-# Copyright (C) 2012  Sam Gillingham, Neil Flood
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
-
-import sys
-
-if __name__ == '__main__':
-    # the __name__ == '__main__' is required under Windows
-    # so they multiprocessing module works.
-    from rios.riostests import riostestutils
-    import warnings
-    warnings.warn("Future versions of RIOS may remove the .py extension from this script name", DeprecationWarning)
-
-    if riostestutils.testAll() > 0:
-        # return error code
-        sys.exit(1)
-    else:
-        sys.exit(0)
diff --git a/setup.py b/setup.py
deleted file mode 100644
index f0c48210..00000000
--- a/setup.py
+++ /dev/null
@@ -1,65 +0,0 @@
-#!/usr/bin/env python
-"""
-The setup script for RIOS. Creates the module, installs
-the scripts. 
-"""
-# This file is part of RIOS - Raster I/O Simplification
-# Copyright (C) 2012  Sam Gillingham, Neil Flood
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <http://www.gnu.org/licenses/>.
-
-import os
-from setuptools import setup
-import glob
-import sys
-import site
-
-
-site.ENABLE_USER_SITE = ("--user" in sys.argv[1:])
-
-# When run via pyproject.toml, we seem unable to import our own package.
-# To get around this, we need to add to the path. I have no idea why,
-# but this seems to work fine.
-sys.path.insert(0, '')
-import rios    # noqa: E402
-
-# Are we installing the command line scripts?
-# this is an experimental option for users who are
-# using the Python entry point feature of setuptools and Conda instead
-NO_INSTALL_CMDLINE = int(os.getenv('RIOS_NOCMDLINE', '0')) > 0
-
-if NO_INSTALL_CMDLINE:
-    # still install the scripts for the parallel processing to work properly
-    scripts_list = ['bin/rios_subproc.py', 'bin/rios_subproc_mpi.py']
-else:
-    scripts_list = glob.glob("bin/*.py")
-
-setup(name='rios',
-      version=rios.RIOS_VERSION,
-      description='Raster Input/Output Simplification',
-      author='Sam Gillingham',
-      author_email='gillingham.sam@gmail.com',
-      scripts=scripts_list,
-      entry_points={
-          'console_scripts': [
-              'testrios = rios.riostests.riostestutils:testAll',
-              'rioscalcstats = rios.cmdline.rioscalcstats:main',
-              'riosprintstats = rios.cmdline.riosprintstats:main',
-              'rios_computeworker = rios.cmdline.rios_computeworker:mainCmd'
-          ]},
-      packages=['rios', 'rios/parallel', 'rios/parallel/aws',
-                        'rios/riostests', 'rios/cmdline'],
-      license='LICENSE.txt', 
-      url='https://www.rioshome.org'
-      )