neio-non-classified.obo

format-version: 1.2
data-version: https://w3id.org/neural-electronic-interface-ontology/neio/releases/2024-06-25/neio-non-classified.owl
idspace: dc http://purl.org/dc/elements/1.1/ 
idspace: foaf http://xmlns.com/foaf/0.1/ 
idspace: neural-electronic-interface-ontology https://w3id.org/neural-electronic-interface-ontology/ 
idspace: oboInOwl http://www.geneontology.org/formats/oboInOwl# 
idspace: protege http://protege.stanford.edu/plugins/owl/protege# 
idspace: swrl http://www.w3.org/2003/11/swrl# 
idspace: swrlb http://www.w3.org/2003/11/swrlb# 
idspace: terms http://purl.org/dc/terms/ 
ontology: https://w3id.org/neural-electronic-interface-ontology/neio/neio-non-classified.owl
property_value: foaf:homepage "https://github.com/uflcod/neural-electronic-interface-ontology" xsd:string
property_value: owl:versionInfo "2024-06-25" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-7387-7944
property_value: terms:contributor https://orcid.org/0000-0001-9990-8331
property_value: terms:contributor https://orcid.org/0000-0002-1118-1738
property_value: terms:contributor https://orcid.org/0000-0002-5260-9315
property_value: terms:contributor https://orcid.org/0009-0006-7251-3026
property_value: terms:contributor https://orcid.org/0009-0008-8150-9779
property_value: terms:contributor https://orcid.org/0009-0009-9778-4641
property_value: terms:created "2023-09-17" xsd:string
property_value: terms:creator https://orcid.org/0000-0001-9625-1899
property_value: terms:description "The Neural Electronic Interface Ontology represents the types of devices used to interface with the central nervous system to enhance (or augment) stimuli from a subject's external environment, the conditions under which these devices should be employed, the assessment of a subject's sensory ability, and the metrics for evaluating the performance." xsd:string
property_value: terms:title "Neural Electronic Interface Ontology" xsd:string

[Term]
id: BFO:0000001
name: entity
property_value: BFO:0000179 "entity" xsd:string
property_value: BFO:0000180 "Entity" xsd:string
property_value: IAO:0000112 "Julius Caesar" xsd:string
property_value: IAO:0000112 "the Second World War" xsd:string
property_value: IAO:0000112 "Verdi’s Requiem" xsd:string
property_value: IAO:0000112 "your body mass index" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: In all areas of empirical inquiry we encounter general terms of two sorts. First are general terms which refer to universals or types:animaltuberculosissurgical procedurediseaseSecond, are general terms used to refer to groups of entities which instantiate a given universal but do not correspond to the extension of any subuniversal of that universal because there is nothing intrinsic to the entities in question by virtue of which they – and only they – are counted as belonging to the given group. Examples are: animal purchased by the Emperortuberculosis diagnosed on a Wednesdaysurgical procedure performed on a patient from Stockholmperson identified as candidate for clinical trial #2056-555person who is signatory of Form 656-PPVpainting by Leonardo da VinciSuch terms, which represent what are called ‘specializations’ in [81" xsd:string
property_value: IAO:0000116 "Entity doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example Werner Ceusters 'portions of reality' include 4 sorts, entities (as BFO construes them), universals, configurations, and relations. It is an open question as to whether entities as construed in BFO will at some point also include these other portions of reality. See, for example, 'How to track absolutely everything' at http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000004", comment="per discussion with Barry Smith", seeAlso="http://www.referent-tracking.com/_RTU/papers/CeustersICbookRevised.pdf"}
property_value: IAO:0000600 "An entity is anything that exists or has existed or will exist. (axiom label in BFO2 Reference: [001-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/001-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000002
name: continuant
def: "An entity that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts." []
is_a: BFO:0000001 ! entity
disjoint_from: BFO:0000003 ! occurrent
relationship: part_of BFO:0000002 {all_only="true"} ! continuant
property_value: BFO:0000179 "continuant" xsd:string
property_value: BFO:0000180 "Continuant" xsd:string
property_value: IAO:0000111 "continuant" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Continuant entities are entities which can be sliced to yield parts only along the spatial dimension, yielding for example the parts of your table which we call its legs, its top, its nails. ‘My desk stretches from the window to the door. It has spatial parts, and can be sliced (in space) in two. With respect to time, however, a thing is a continuant.’ [60, p. 240" xsd:string
property_value: IAO:0000116 "Continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. For example, in an expansion involving bringing in some of Ceuster's other portions of reality, questions are raised as to whether universals are continuants" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000007"}
property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl
property_value: IAO:0000600 "A continuant is an entity that persists, endures, or continues to exist through time while maintaining its identity. (axiom label in BFO2 Reference: [008-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/008-002"}
property_value: IAO:0000601 "if b is a continuant and if, for some t, c has_continuant_part b at t, then c is a continuant. (axiom label in BFO2 Reference: [126-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/126-001"}
property_value: IAO:0000601 "if b is a continuant and if, for some t, cis continuant_part of b at t, then c is a continuant. (axiom label in BFO2 Reference: [009-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/009-002"}
property_value: IAO:0000601 "if b is a material entity, then there is some temporal interval (referred to below as a one-dimensional temporal region) during which b exists. (axiom label in BFO2 Reference: [011-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/011-002"}
property_value: IAO:0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (continuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [009-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/009-002"}
property_value: IAO:0000602 "(forall (x y) (if (and (Continuant x) (exists (t) (hasContinuantPartOfAt y x t))) (Continuant y))) // axiom label in BFO2 CLIF: [126-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/126-001"}
property_value: IAO:0000602 "(forall (x) (if (Continuant x) (Entity x))) // axiom label in BFO2 CLIF: [008-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/008-002"}
property_value: IAO:0000602 "(forall (x) (if (Material Entity x) (exists (t) (and (TemporalRegion t) (existsAt x t))))) // axiom label in BFO2 CLIF: [011-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/011-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000003
name: occurrent
def: "An entity that has temporal parts and that happens, unfolds or develops through time." []
is_a: BFO:0000001 ! entity
relationship: part_of BFO:0000003 {all_only="true"} ! occurrent
property_value: BFO:0000179 "occurrent" xsd:string
property_value: BFO:0000180 "Occurrent" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: every occurrent that is not a temporal or spatiotemporal region is s-dependent on some independent continuant that is not a spatial region" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: s-dependence obtains between every process and its participants in the sense that, as a matter of necessity, this process could not have existed unless these or those participants existed also. A process may have a succession of participants at different phases of its unfolding. Thus there may be different players on the field at different times during the course of a football game; but the process which is the entire game s-depends_on all of these players nonetheless. Some temporal parts of this process will s-depend_on on only some of the players." xsd:string
property_value: IAO:0000116 "Occurrent doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. An example would be the sum of a process and the process boundary of another process." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000006", comment="per discussion with Barry Smith"}
property_value: IAO:0000116 "Simons uses different terminology for relations of occurrents to regions: Denote the spatio-temporal location of a given occurrent e by 'spn[e]' and call this region its span. We may say an occurrent is at its span, in any larger region, and covers any smaller region. Now suppose we have fixed a frame of reference so that we can speak not merely of spatio-temporal but also of spatial regions (places) and temporal regions (times). The spread of an occurrent, (relative to a frame of reference) is the space it exactly occupies, and its spell is likewise the time it exactly occupies. We write 'spr[e]' and `spl[e]' respectively for the spread and spell of e, omitting mention of the frame." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000012"}
property_value: IAO:0000600 "An occurrent is an entity that unfolds itself in time or it is the instantaneous boundary of such an entity (for example a beginning or an ending) or it is a temporal or spatiotemporal region which such an entity occupies_temporal_region or occupies_spatiotemporal_region. (axiom label in BFO2 Reference: [077-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/077-002"}
property_value: IAO:0000601 "b is an occurrent entity iff b is an entity that has temporal parts. (axiom label in BFO2 Reference: [079-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/079-001"}
property_value: IAO:0000601 "Every occurrent occupies_spatiotemporal_region some spatiotemporal region. (axiom label in BFO2 Reference: [108-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/108-001"}
property_value: IAO:0000602 "(forall (x) (if (Occurrent x) (exists (r) (and (SpatioTemporalRegion r) (occupiesSpatioTemporalRegion x r))))) // axiom label in BFO2 CLIF: [108-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/108-001"}
property_value: IAO:0000602 "(forall (x) (iff (Occurrent x) (and (Entity x) (exists (y) (temporalPartOf y x))))) // axiom label in BFO2 CLIF: [079-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/079-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000004
name: independent continuant
def: "A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything." []
def: "b is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"}
comment: A continuant that is a bearer of quality and realizable entity entities, in which other entities inhere and which itself cannot inhere in anything.
is_a: BFO:0000002 ! continuant
disjoint_from: BFO:0000020 ! specifically dependent continuant
relationship: part_of BFO:0000004 {all_only="true"} ! independent continuant
property_value: BFO:0000179 "ic" xsd:string
property_value: BFO:0000180 "IndependentContinuant" xsd:string
property_value: IAO:0000112 "a chair" xsd:string
property_value: IAO:0000112 "a heart" xsd:string
property_value: IAO:0000112 "a leg" xsd:string
property_value: IAO:0000112 "a molecule" xsd:string
property_value: IAO:0000112 "a spatial region" xsd:string
property_value: IAO:0000112 "an atom" xsd:string
property_value: IAO:0000112 "an orchestra." xsd:string
property_value: IAO:0000112 "an organism" xsd:string
property_value: IAO:0000112 "the bottom right portion of a human torso" xsd:string
property_value: IAO:0000112 "the interior of your mouth" xsd:string
property_value: IAO:0000601 "For any independent continuant b and any time t there is some spatial region r such that b is located_in r at t. (axiom label in BFO2 Reference: [134-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/134-001"}
property_value: IAO:0000601 "For every independent continuant b and time t during the region of time spanned by its life, there are entities which s-depends_on b during t. (axiom label in BFO2 Reference: [018-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/018-002"}
property_value: IAO:0000602 "(forall (x t) (if (and (IndependentContinuant x) (existsAt x t)) (exists (y) (and (Entity y) (specificallyDependsOnAt y x t))))) // axiom label in BFO2 CLIF: [018-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/018-002"}
property_value: IAO:0000602 "(forall (x t) (if (IndependentContinuant x) (exists (r) (and (SpatialRegion r) (locatedInAt x r t))))) // axiom label in BFO2 CLIF: [134-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/134-001"}
property_value: IAO:0000602 "(iff (IndependentContinuant a) (and (Continuant a) (not (exists (b t) (specificallyDependsOnAt a b t))))) // axiom label in BFO2 CLIF: [017-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/017-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000015
name: process
def: "p is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"}
comment: An occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t.
is_a: BFO:0000003 ! occurrent
property_value: BFO:0000179 "process" xsd:string
property_value: BFO:0000180 "Process" xsd:string
property_value: IAO:0000112 "a process of cell-division, \\ a beating of the heart" xsd:string
property_value: IAO:0000112 "a process of meiosis" xsd:string
property_value: IAO:0000112 "a process of sleeping" xsd:string
property_value: IAO:0000112 "the course of a disease" xsd:string
property_value: IAO:0000112 "the flight of a bird" xsd:string
property_value: IAO:0000112 "the life of an organism" xsd:string
property_value: IAO:0000112 "your process of aging." xsd:string
property_value: IAO:0000116 "BFO 2 Reference: The realm of occurrents is less pervasively marked by the presence of natural units than is the case in the realm of independent continuants. Thus there is here no counterpart of ‘object’. In BFO 1.0 ‘process’ served as such a counterpart. In BFO 2.0 ‘process’ is, rather, the occurrent counterpart of ‘material entity’. Those natural – as contrasted with engineered, which here means: deliberately executed – units which do exist in the realm of occurrents are typically either parasitic on the existence of natural units on the continuant side, or they are fiat in nature. Thus we can count lives; we can count football games; we can count chemical reactions performed in experiments or in chemical manufacturing. We cannot count the processes taking place, for instance, in an episode of insect mating behavior.Even where natural units are identifiable, for example cycles in a cyclical process such as the beating of a heart or an organism’s sleep/wake cycle, the processes in question form a sequence with no discontinuities (temporal gaps) of the sort that we find for instance where billiard balls or zebrafish or planets are separated by clear spatial gaps. Lives of organisms are process units, but they too unfold in a continuous series from other, prior processes such as fertilization, and they unfold in turn in continuous series of post-life processes such as post-mortem decay. Clear examples of boundaries of processes are almost always of the fiat sort (midnight, a time of death as declared in an operating theater or on a death certificate, the initiation of a state of war)" xsd:string
property_value: IAO:0000602 "(iff (Process a) (and (Occurrent a) (exists (b) (properTemporalPartOf b a)) (exists (c t) (and (MaterialEntity c) (specificallyDependsOnAt a c t))))) // axiom label in BFO2 CLIF: [083-003] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/083-003"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000016
name: disposition
is_a: BFO:0000017 ! realizable entity
property_value: BFO:0000179 "disposition" xsd:string
property_value: BFO:0000180 "Disposition" xsd:string
property_value: IAO:0000112 "an atom of element X has the disposition to decay to an atom of element Y" xsd:string
property_value: IAO:0000112 "certain people have a predisposition to colon cancer" xsd:string
property_value: IAO:0000112 "children are innately disposed to categorize objects in certain ways." xsd:string
property_value: IAO:0000112 "the cell wall is disposed to filter chemicals in endocytosis and exocytosis" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Dispositions exist along a strength continuum. Weaker forms of disposition are realized in only a fraction of triggering cases. These forms occur in a significant number of cases of a similar type." xsd:string
property_value: IAO:0000600 "b is a disposition means: b is a realizable entity & b’s bearer is some material entity & b is such that if it ceases to exist, then its bearer is physically changed, & b’s realization occurs when and because this bearer is in some special physical circumstances, & this realization occurs in virtue of the bearer’s physical make-up. (axiom label in BFO2 Reference: [062-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/062-002"}
property_value: IAO:0000601 "If b is a realizable entity then for all t at which b exists, b s-depends_on some material entity at t. (axiom label in BFO2 Reference: [063-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/063-002"}
property_value: IAO:0000602 "(forall (x t) (if (and (RealizableEntity x) (existsAt x t)) (exists (y) (and (MaterialEntity y) (specificallyDepends x y t))))) // axiom label in BFO2 CLIF: [063-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/063-002"}
property_value: IAO:0000602 "(forall (x) (if (Disposition x) (and (RealizableEntity x) (exists (y) (and (MaterialEntity y) (bearerOfAt x y t)))))) // axiom label in BFO2 CLIF: [062-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/062-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000017
name: realizable entity
def: "A specifically dependent continuant  that inheres in continuant  entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances." []
is_a: BFO:0000020 ! specifically dependent continuant
property_value: BFO:0000179 "realizable" xsd:string
property_value: BFO:0000180 "RealizableEntity" xsd:string
property_value: IAO:0000112 "the disposition of this piece of metal to conduct electricity." xsd:string
property_value: IAO:0000112 "the disposition of your blood to coagulate" xsd:string
property_value: IAO:0000112 "the function of your reproductive organs" xsd:string
property_value: IAO:0000112 "the role of being a doctor" xsd:string
property_value: IAO:0000112 "the role of this boundary to delineate where Utah and Colorado meet" xsd:string
property_value: IAO:0000600 "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/058-002"}
property_value: IAO:0000601 "All realizable dependent continuants have independent continuants that are not spatial regions as their bearers. (axiom label in BFO2 Reference: [060-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/060-002"}
property_value: IAO:0000602 "(forall (x t) (if (RealizableEntity x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (bearerOfAt y x t))))) // axiom label in BFO2 CLIF: [060-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/060-002"}
property_value: IAO:0000602 "(forall (x) (if (RealizableEntity x) (and (SpecificallyDependentContinuant x) (exists (y) (and (IndependentContinuant y) (not (SpatialRegion y)) (inheresIn x y)))))) // axiom label in BFO2 CLIF: [058-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/058-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000020
name: specifically dependent continuant
def: "A continuant that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same." []
def: "b is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"}
is_a: BFO:0000002 ! continuant
property_value: BFO:0000179 "sdc" xsd:string
property_value: BFO:0000180 "SpecificallyDependentContinuant" xsd:string
property_value: IAO:0000112 "of one-sided specifically dependent continuants: the mass of this tomato" xsd:string
property_value: IAO:0000112 "of relational dependent continuants (multiple bearers): John’s love for Mary, the ownership relation between John and this statue, the relation of authority between John and his subordinates." xsd:string
property_value: IAO:0000112 "Reciprocal specifically dependent continuants: the function of this key to open this lock and the mutually dependent disposition of this lock: to be opened by this key" xsd:string
property_value: IAO:0000112 "the disposition of this fish to decay" xsd:string
property_value: IAO:0000112 "the function of this heart: to pump blood" xsd:string
property_value: IAO:0000112 "the mutual dependence of proton donors and acceptors in chemical reactions [79" xsd:string
property_value: IAO:0000112 "the mutual dependence of the role predator and the role prey as played by two organisms in a given interaction" xsd:string
property_value: IAO:0000112 "the pink color of a medium rare piece of grilled filet mignon at its center" xsd:string
property_value: IAO:0000112 "the role of being a doctor" xsd:string
property_value: IAO:0000112 "the shape of this hole." xsd:string
property_value: IAO:0000112 "the smell of this portion of mozzarella" xsd:string
property_value: IAO:0000116 "Specifically dependent continuant doesn't have a closure axiom because the subclasses don't necessarily exhaust all possibilites. We're not sure what else will develop here, but for example there are questions such as what are promises, obligation, etc." xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/0000005", comment="per discussion with Barry Smith"}
property_value: IAO:0000602 "(iff (SpecificallyDependentContinuant a) (and (Continuant a) (forall (t) (if (existsAt a t) (exists (b) (and (IndependentContinuant b) (not (SpatialRegion b)) (specificallyDependsOnAt a b t))))))) // axiom label in BFO2 CLIF: [050-003] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/050-003"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000023
name: role
def: "A realizable entity  the manifestation of which brings about some result or end that is not essential to a continuant  in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant  in some kinds of natural, social or institutional contexts." []
is_a: BFO:0000017 ! realizable entity
property_value: BFO:0000179 "role" xsd:string
property_value: BFO:0000180 "Role" xsd:string
property_value: IAO:0000112 "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married." xsd:string
property_value: IAO:0000112 "the priest role" xsd:string
property_value: IAO:0000112 "the role of a boundary to demarcate two neighboring administrative territories" xsd:string
property_value: IAO:0000112 "the role of a building in serving as a military target" xsd:string
property_value: IAO:0000112 "the role of a stone in marking a property boundary" xsd:string
property_value: IAO:0000112 "the role of subject in a clinical trial" xsd:string
property_value: IAO:0000112 "the student role" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals –  professor, sergeant, nurse – only during certain phases in their lives." xsd:string
property_value: IAO:0000600 "b is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed. (axiom label in BFO2 Reference: [061-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/061-001"}
property_value: IAO:0000602 "(forall (x) (if (Role x) (RealizableEntity x))) // axiom label in BFO2 CLIF: [061-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/061-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000031
name: generically dependent continuant
def: "b is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001])" [] {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/074-001"}
is_a: BFO:0000002 ! continuant
property_value: BFO:0000179 "gdc" xsd:string
property_value: BFO:0000180 "GenericallyDependentContinuant" xsd:string
property_value: IAO:0000112 "The entries in your database are patterns instantiated as quality instances in your hard drive. The database itself is an aggregate of such patterns. When you create the database you create a particular instance of the generically dependent continuant type database. Each entry in the database is an instance of the generically dependent continuant type IAO: information content entity." xsd:string
property_value: IAO:0000112 "the pdf file on your laptop, the pdf file that is a copy thereof on my laptop" xsd:string
property_value: IAO:0000112 "the sequence of this protein molecule; the sequence that is a copy thereof in that protein molecule." xsd:string
property_value: IAO:0000602 "(iff (GenericallyDependentContinuant a) (and (Continuant a) (exists (b t) (genericallyDependsOnAt a b t)))) // axiom label in BFO2 CLIF: [074-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/074-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000034
name: function
is_a: BFO:0000016 ! disposition
property_value: BFO:0000179 "function" xsd:string
property_value: BFO:0000180 "Function" xsd:string
property_value: IAO:0000112 "the function of a hammer to drive in nails" xsd:string
property_value: IAO:0000112 "the function of a heart pacemaker to regulate the beating of a heart through electricity" xsd:string
property_value: IAO:0000112 "the function of amylase in saliva to break down starch into sugar" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: In the past, we have distinguished two varieties of function, artifactual function and biological function. These are not asserted subtypes of BFO:function however, since the same function – for example: to pump, to transport – can exist both in artifacts and in biological entities. The asserted subtypes of function that would be needed in order to yield a separate monoheirarchy are not artifactual function, biological function, etc., but rather transporting function, pumping function, etc." xsd:string
property_value: IAO:0000600 "A function is a disposition that exists in virtue of the bearer’s physical make-up and this physical make-up is something the bearer possesses because it came into being, either through evolution (in the case of natural biological entities) or through intentional design (in the case of artifacts), in order to realize processes of a certain sort. (axiom label in BFO2 Reference: [064-001])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/064-001"}
property_value: IAO:0000602 "(forall (x) (if (Function x) (Disposition x))) // axiom label in BFO2 CLIF: [064-001] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/064-001"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: BFO:0000040
name: material entity
def: "An independent continuant that is spatially extended whose identity is independent of that of other entities and can be maintained through time." []
is_a: BFO:0000004 ! independent continuant
property_value: BFO:0000179 "material" xsd:string
property_value: BFO:0000180 "MaterialEntity" xsd:string
property_value: IAO:0000111 "material entity" xsd:string
property_value: IAO:0000112 "a flame" xsd:string
property_value: IAO:0000112 "a forest fire" xsd:string
property_value: IAO:0000112 "a human being" xsd:string
property_value: IAO:0000112 "a hurricane" xsd:string
property_value: IAO:0000112 "a photon" xsd:string
property_value: IAO:0000112 "a puff of smoke" xsd:string
property_value: IAO:0000112 "a sea wave" xsd:string
property_value: IAO:0000112 "a tornado" xsd:string
property_value: IAO:0000112 "an aggregate of human beings." xsd:string
property_value: IAO:0000112 "an energy wave" xsd:string
property_value: IAO:0000112 "an epidemic" xsd:string
property_value: IAO:0000112 "the undetached arm of a human being" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60" xsd:string
property_value: IAO:0000116 "BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity." xsd:string
property_value: IAO:0000116 "BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here." xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ido.owl
property_value: IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
property_value: IAO:0000600 "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/019-002"}
property_value: IAO:0000601 "every entity of which a material entity is continuant part is also a material entity. (axiom label in BFO2 Reference: [021-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/021-002"}
property_value: IAO:0000601 "Every entity which has a material entity as continuant part is a material entity. (axiom label in BFO2 Reference: [020-002])" xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/020-002"}
property_value: IAO:0000602 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt x y t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [021-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/021-002"}
property_value: IAO:0000602 "(forall (x) (if (and (Entity x) (exists (y t) (and (MaterialEntity y) (continuantPartOfAt y x t)))) (MaterialEntity x))) // axiom label in BFO2 CLIF: [020-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/020-002"}
property_value: IAO:0000602 "(forall (x) (if (MaterialEntity x) (IndependentContinuant x))) // axiom label in BFO2 CLIF: [019-002] " xsd:string {IAO:0010000="http://purl.obolibrary.org/obo/bfo/axiom/019-002"}
property_value: isDefinedBy http://purl.obolibrary.org/obo/bfo.owl

[Term]
id: CL:0000000
name: cell
def: "A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:mah]
comment: The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).
subset: ubprop:upper_level
xref: CALOHA:TS-2035
xref: FBbt:00007002
xref: FMA:68646
xref: GO:0005623
xref: KUPO:0000002
xref: MESH:D002477
xref: VHOG:0001533
xref: WBbt:0004017
xref: XAO:0003012
is_a: UBERON:0000061 ! anatomical structure
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: CL:0000211
name: electrically active cell
def: "A cell whose function is determined by the generation or the reception of an electric signal." [FB:ma]
is_a: CL:0000000 ! cell
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: CL:0000393
name: electrically responsive cell
def: "A cell whose function is determined by its response to an electric signal." [FB:ma]
is_a: CL:0000211 ! electrically active cell
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: CL:0000404
name: electrically signaling cell
def: "A cell that initiates an electrical signal and passes that signal to another cell." [FB:ma]
is_a: CL:0000211 ! electrically active cell
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: CL:0000540
name: neuron
def: "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [http://en.wikipedia.org/wiki/Neuron, MESH:D009474]
comment: These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma.
subset: general_cell_types_upper_slim
subset: human_reference_atlas
synonym: "nerve cell" EXACT []
xref: BTO:0000938
xref: CALOHA:TS-0683
xref: FBbt:00005106
xref: FMA:54527
xref: VHOG:0001483
xref: WBbt:0003679
is_a: CL:0000393 ! electrically responsive cell
is_a: CL:0000404 ! electrically signaling cell
is_a: CL:0002319 ! neural cell
property_value: foaf:depiction "https://www.swissbiopics.org/api/image/Neuron_cells.svg" xsd:anyURI
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:9606

[Term]
id: CL:0002319
name: neural cell
def: "A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256]
xref: CALOHA:TS-2040
xref: FMA:70333
is_a: CL:0000000 ! cell
intersection_of: CL:0000000 ! cell
intersection_of: part_of UBERON:0001016 ! nervous system
relationship: part_of UBERON:0001016 ! nervous system
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: terms:contributor https://orcid.org/0000-0003-1980-3228
creation_date: 2010-09-15T01:34:57Z

[Term]
id: CL:0008028
name: visual system neuron
is_a: CL:0000540 ! neuron
intersection_of: CL:0000540 ! neuron
intersection_of: capable_of_part_of GO:0007601 ! visual perception
relationship: capable_of_part_of GO:0007601 ! visual perception
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: terms:contributor https://orcid.org/0000-0002-7073-9172
creation_date: 2017-07-09T19:12:36Z

[Term]
id: CL:0009001
name: compound eye retinal cell
def: "Any cell in the compound eye, a light sensing organ composed of ommatidia." []
xref: GOC:pr
xref: PMID:12021768
is_a: CL:0009004 ! retinal cell
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: CL:0009004
name: retinal cell
def: "Any cell in the retina, the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [GOC:pr]
subset: general_cell_types_upper_slim
xref: PMID:10702418
is_a: CL:0002319 ! neural cell
intersection_of: CL:0002319 ! neural cell
intersection_of: part_of UBERON:0005388 ! photoreceptor array
relationship: part_of UBERON:0005388 ! photoreceptor array
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0003008
name: system process
namespace: biological_process
def: "A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective." [GOC:mtg_cardio]
synonym: "organ system process" EXACT []
is_a: GO:0032501 ! multicellular organismal process
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0007600
name: sensory perception
namespace: biological_process
def: "The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process." [GOC:ai, GOC:dph]
subset: goslim_drosophila
xref: Wikipedia:Perception
is_a: GO:0050877 ! nervous system process
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0007601
name: visual perception
namespace: biological_process
def: "The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image." [GOC:ai]
synonym: "sense of sight" EXACT []
synonym: "sensory visual perception" EXACT []
synonym: "vision" EXACT []
xref: Wikipedia:Visual_perception
is_a: GO:0050953 ! sensory perception of light stimulus
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0008150
name: biological_process
namespace: biological_process
alt_id: GO:0000004
alt_id: GO:0007582
alt_id: GO:0044699
def: "A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt]
comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. When this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code 'no data' (ND), is used to indicate this.
subset: goslim_candida
subset: goslim_chembl
subset: goslim_metagenomics
subset: goslim_pir
subset: goslim_plant
subset: goslim_pombe
subset: goslim_yeast
synonym: "biological process" EXACT []
synonym: "physiological process" EXACT []
synonym: "single organism process" RELATED []
synonym: "single-organism process" RELATED []
xref: Wikipedia:Biological_process
is_a: BFO:0000015 ! process
property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/24968" xsd:anyURI
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
created_by: jl
creation_date: 2012-09-19T15:05:24Z

[Term]
id: GO:0009314
name: response to radiation
namespace: biological_process
def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation." [GOC:jl, Wikipedia:Electromagnetic_radiation]
comment: Note that 'radiation' refers to electromagnetic radiation of any wavelength.
synonym: "response to electromagnetic radiation stimulus" EXACT []
synonym: "response to radiation stimulus" EXACT []
is_a: GO:0009628 ! response to abiotic stimulus
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0009416
name: response to light stimulus
namespace: biological_process
def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light." [GOC:go_curators, ISBN:0582227089]
subset: goslim_plant
is_a: GO:0009314 ! response to radiation
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0009581
name: detection of external stimulus
namespace: biological_process
def: "The series of events in which an external stimulus is received by a cell and converted into a molecular signal." [GOC:hb]
synonym: "perception of external stimulus" RELATED []
is_a: GO:0009605 ! response to external stimulus
is_a: GO:0051606 ! detection of stimulus
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0009582
name: detection of abiotic stimulus
namespace: biological_process
def: "The series of events in which an (non-living) abiotic stimulus is received by a cell and converted into a molecular signal." [GOC:hb]
synonym: "perception of abiotic stimulus" RELATED []
is_a: GO:0009628 ! response to abiotic stimulus
is_a: GO:0051606 ! detection of stimulus
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0009583
name: detection of light stimulus
namespace: biological_process
def: "The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal." [GOC:go_curators]
synonym: "detection of light" EXACT []
synonym: "perception of light" RELATED []
is_a: GO:0009416 ! response to light stimulus
is_a: GO:0009581 ! detection of external stimulus
is_a: GO:0009582 ! detection of abiotic stimulus
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0009584
name: detection of visible light
namespace: biological_process
def: "The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm." [GOC:go_curators, ISBN:0198506732]
synonym: "perception of visible light" RELATED []
is_a: GO:0009583 ! detection of light stimulus
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0009605
name: response to external stimulus
namespace: biological_process
def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus." [GOC:hb]
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
subset: gocheck_do_not_manually_annotate
subset: goslim_drosophila
subset: goslim_plant
synonym: "response to environmental stimulus" EXACT []
is_a: GO:0050896 ! response to stimulus
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0009628
name: response to abiotic stimulus
namespace: biological_process
def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (not derived from living organisms) stimulus." [GOC:hb]
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
subset: gocheck_do_not_manually_annotate
subset: goslim_metagenomics
subset: goslim_plant
synonym: "response to abiotic stress" NARROW []
is_a: GO:0050896 ! response to stimulus
property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/16572" xsd:anyURI
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0032501
name: multicellular organismal process
namespace: biological_process
alt_id: GO:0044707
alt_id: GO:0050874
def: "Any biological process, occurring at the level of a multicellular organism, pertinent to its function." [GOC:curators, GOC:dph, GOC:isa_complete, GOC:tb]
subset: gocheck_do_not_annotate
subset: goslim_pir
synonym: "organismal physiological process" EXACT []
synonym: "single-multicellular organism process" RELATED []
is_a: GO:0008150 ! biological_process
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002161 NCBITaxon:2
property_value: RO:0002161 NCBITaxon:2157
property_value: RO:0002161 NCBITaxon:4896
property_value: RO:0002161 NCBITaxon:4932
created_by: jl
creation_date: 2012-09-19T16:07:47Z

[Term]
id: GO:0050877
name: nervous system process
namespace: biological_process
def: "A organ system process carried out by any of the organs or tissues of neurological system." [GOC:ai, GOC:mtg_cardio]
subset: goslim_agr
subset: goslim_chembl
subset: goslim_flybase_ribbon
subset: goslim_generic
subset: goslim_pir
synonym: "neurological system process" EXACT []
synonym: "neurophysiological process" EXACT []
synonym: "pan-neural process" RELATED []
is_a: GO:0003008 ! system process
property_value: IAO:0000233 "https://github.com/geneontology/go-ontology/issues/13824" xsd:anyURI
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0050896
name: response to stimulus
namespace: biological_process
alt_id: GO:0051869
def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf]
comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
subset: gocheck_do_not_manually_annotate
subset: goslim_agr
subset: goslim_flybase_ribbon
subset: goslim_mouse
subset: goslim_pir
subset: prokaryote_subset
synonym: "physiological response to stimulus" EXACT []
is_a: GO:0008150 ! biological_process
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0050953
name: sensory perception of light stimulus
namespace: biological_process
def: "The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process." [GOC:ai]
is_a: GO:0007600 ! sensory perception
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: GO:0051606
name: detection of stimulus
namespace: biological_process
def: "The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal." [GOC:add, GOC:ai, GOC:dph, GOC:mah]
subset: goslim_pir
synonym: "perception of stimulus" RELATED []
synonym: "stimulus detection" EXACT []
synonym: "stimulus sensing" RELATED []
is_a: GO:0050896 ! response to stimulus
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: IAO:0000027
name: data item
def: "An information content entity that is intended to be a truthful statement about something (modulo, e.g., measurement precision or other systematic errors) and is constructed/acquired by a method which reliably tends to produce (approximately) truthful statements." []
is_a: IAO:0000030 ! information content entity
property_value: IAO:0000111 "data item" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/iao.owl
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: IAO:0000030
name: information content entity
def: "A generically dependent continuant that is about some thing." []
is_a: BFO:0000031 ! generically dependent continuant
property_value: IAO:0000111 "information content entity" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/iao.owl
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: IDO:0000504
name: infectious disorder
def: "An infection that is clinically abnormal." []
is_a: OGMS:0000045 ! disorder
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ido.owl
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: IDO:0000586
name: infection
def: "A part of an extended organism that itself has as part a population of one or more infectious agents and that (1) exists as a result of processes initiated by members of the infectious agent population and is (2) clinically abnormal in virtue of the presence of this infectious agent population, or (3) has a disposition to bring clinical abnormality to immunocompetent organisms of the same Species as the host (the organism corresponding to the extended organism) through transmission of a member or offspring of a member of the infectious agent population." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ido.owl
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: NCBITaxon:9606
name: Homo sapiens
is_a: OBI:0100026 ! organism
property_value: IAO:0000111 "Homo sapiens" xsd:string
property_value: IAO:0000118 "human being" xsd:string
property_value: IAO:0000412 http://purl.obolibrary.org/obo/ncbitaxon.owl
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OBI:0000047
name: processed material
def: "Is a material entity that is created or changed during material processing." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000111 "processed material" xsd:string
property_value: IAO:0000112 "Examples include gel matrices, filter paper, parafilm and buffer solutions, mass spectrometer, tissue samples" xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/obi_import.owl

[Term]
id: OBI:0000245
name: organization
def: "An entity that can bear roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000111 "organization" xsd:string
property_value: IAO:0000112 "PMID: 16353909.AAPS J. 2005 Sep 22;7(2):E274-80. Review. The joint food and agriculture organization of the United Nations/World Health Organization Expert Committee on Food Additives and its role in the evaluation of the safety of veterinary drug residues in foods." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "BP: The definition summarizes long email discussions on the OBI developer, roles, biomaterial and denrie branches. It leaves open if an organization is a material entity or a dependent continuant, as no consensus was reached on that.  The current placement as material is therefore temporary, in order to move forward with development. Here is the entire email summary, on which the definition is based:\n\n1) there are organization_member_roles (president, treasurer, branch\neditor), with individual persons as bearers\n\n2) there are organization_roles (employer, owner, vendor, patent holder)\n\n3) an organization has a charter / rules / bylaws, which specify what roles\nthere are, how they should be realized, and how to modify the\ncharter/rules/bylaws themselves.\n\nIt is debatable what the organization itself is (some kind of dependent\ncontinuant or an aggregate of people). This also determines who/what the\nbearer of organization_roles' are. My personal favorite is still to define\norganization as a kind of 'legal entity', but thinking it through leads to\nall kinds of questions that are clearly outside the scope of OBI.\n\nInterestingly enough, it does not seem to matter much where we place\norganization itself, as long as we can subclass it (University, Corporation,\nGovernment Agency, Hospital), instantiate it (Affymetrix, NCBI, NIH, ISO,\nW3C, University of Oklahoma), and have it play roles.\n\nThis leads to my proposal: We define organization through the statements 1 -\n3 above, but without an 'is a' statement for now. We can leave it in its\ncurrent place in the is_a hierarchy (material entity) or move it up to\n'continuant'. We leave further clarifications to BFO, and close this issue\nfor now." xsd:string
property_value: IAO:0000117 "PERSON: Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "PERSON: Bjoern Peters" xsd:string
property_value: IAO:0000117 "PERSON: Philippe Rocca-Serra" xsd:string
property_value: IAO:0000117 "PERSON: Susanna Sansone" xsd:string
property_value: IAO:0000119 "GROUP: OBI" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/obi_import.owl

[Term]
id: OBI:0000968
name: device
def: "A material entity that is designed to perform a function in a scientific investigation, but is not a reagent." []
is_a: OBI:0000047 ! processed material
property_value: IAO:0000111 "device" xsd:string
property_value: IAO:0000112 "A voltmeter is a measurement device which is intended to perform some measure function." xsd:string
property_value: IAO:0000112 "An autoclave is a device that sterlizes instruments or contaminated waste by applying high temperature and pressure." xsd:string
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "2012-12-17 JAO: In common lab usage, there is a distinction made between devices and reagents that is difficult to model. Therefore we have chosen to specifically exclude reagents from the definition of \"device\", and are enumerating the types of roles that a reagent can perform.\n\n2013-6-5 MHB: The following clarifications are outcomes of the May 2013 Philly Workshop. Reagents are distinguished from devices that also participate in scientific techniques by the fact that reagents are chemical or biological in nature and necessarily participate in some chemical interaction or reaction during the realization of their experimental role. By contrast, devices do not participate in such chemical reactions/interactions.  Note that there are cases where devices use reagent components during their operation, where the reagent-device distinction is less clear.  For example:\n\n(1) An HPLC machine is considered a device, but has a column that holds a stationary phase resin as an operational component.  This resin qualifies as a device if it participates purely in size exclusion, but bears a reagent role that is realized in the running of a column if it interacts electrostatically or chemically with the evaluant. The container the resin is in (“the column”) considered alone is a device. So the entire column as well as the entire HPLC machine are devices that have a reagent as an operating part.\n\n(2) A pH meter is a device, but its electrode component bears a reagent role in virtue of its interacting directly with the evaluant in execution of an assay.\n\n(3) A gel running  box  is a device that has a metallic lead as a component that participates in a chemical reaction with the running buffer when a charge is passed through it.  This metallic lead is considered to have a reagent role as a component of this device realized in the running of a gel.\n\nIn the examples above, a reagent is an operational component of a device, but the device itself does not realize a reagent role (as bearing a reagent role is not transitive across the part_of relation).  In this way, the asserted disjointness between a reagent and device holds, as both roles are never realized in the same bearer during execution of an assay." xsd:string
property_value: IAO:0000117 "PERSON: Helen Parkinson" xsd:string
property_value: IAO:0000118 "instrument" xsd:string
property_value: IAO:0000119 "OBI development call 2012-12-17." xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/obi_import.owl

[Term]
id: OBI:0100026
name: organism
def: "A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000111 "organism" xsd:string
property_value: IAO:0000112 "animal" xsd:string
property_value: IAO:0000112 "fungus" xsd:string
property_value: IAO:0000112 "plant" xsd:string
property_value: IAO:0000112 "virus" xsd:string
property_value: IAO:0000114 IAO:0000121
property_value: IAO:0000114 IAO:0000122
property_value: IAO:0000116 "10/21/09: This is a placeholder term, that should ideally be imported from the NCBI taxonomy, but the high level hierarchy there does not suit our needs (includes plasmids and 'other organisms')" xsd:string
property_value: IAO:0000116 "13-02-2009:\nOBI doesn't take position as to  when an organism starts or ends being an organism - e.g. sperm, foetus.\nThis issue is outside the scope of OBI." xsd:string
property_value: IAO:0000117 "GROUP: OBI Biomaterial Branch" xsd:string
property_value: IAO:0000119 "WEB: http://en.wikipedia.org/wiki/Organism" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OGMS:0000014
name: clinical finding
def: "A representation that is either the output of a clinical history taking or a physical examination or an image finding, or some combination thereof." []
is_a: OGMS:0000123 ! clinical data item
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2010-07-19T10:18:02Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000015
name: clinical history
def: "A series of statements representing health-relevant qualities of a patient and of a patient's family." []
is_a: OGMS:0000123 ! clinical data item
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2010-07-19T10:18:59Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000016
name: clinical picture
def: "A representation of clinically significant bodily components, dispositions, and/or bodily processes of a human being that is inferred from relevant clinical findings." []
is_a: OGMS:0000123 ! clinical data item
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2010-07-19T10:20:20Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000017
name: image finding
def: "A representation of an image that supports an inference to an assertion about some quality of a patient." []
is_a: OGMS:0000014 ! clinical finding
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T10:21:10Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000018
name: laboratory finding
def: "A representation of a quality of a specimen that is the output of a laboratory test and that can support an inference to an assertion about some quality of the patient." []
is_a: OGMS:0000014 ! clinical finding
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T10:21:58Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000030
name: predisposition to disease of type X
def: "A disposition in an organism that constitutes an increased risk of the organism's subsequently developing the disease X." []
is_a: BFO:0000016 ! disposition
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:20:25Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000031
name: disease
def: "A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism." []
is_a: BFO:0000016 ! disposition
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:21:20Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000032
name: homeostasis
is_a: BFO:0000016 ! disposition
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:22:01Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000033
name: genetic predisposition to disease of type X
def: "A predisposition to disease of type X whose physical basis is a constitutional abnormality in an organism's genome. This abnormality is the physical basis for the increased risk of acquiring the disease X." []
is_a: OGMS:0000030 ! predisposition to disease of type X
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:23:07Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000034
name: acquired genetic disease
def: "A disease whose physical basis is an acquired genetic disorder." []
is_a: OGMS:0000031 ! disease
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:24:05Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000035
name: constitutional genetic disease
def: "A disease whose physical basis is a constitutional genetic disorder." []
is_a: OGMS:0000031 ! disease
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:24:59Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000037
name: abnormal homeostasis
def: "Homeostasis that is clinically abnormal for an organism of a given type and age in a given environment." []
is_a: OGMS:0000032 ! homeostasis
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:26:44Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000038
name: normal homeostasis
def: "Homeostasis of a type that is not clinically abnormal." []
is_a: OGMS:0000032 ! homeostasis
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:27:28Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000045
name: disorder
def: "A material entity which is clinically abnormal and part of an extended organism. Disorders are the physical basis of disease." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:39:44Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000046
name: epigenetic disorder
def: "A disorder whose etiology involves (1) a modification to the patient's genomic DNA which leads to alterations in the normal expression pattern of the genome, but is (2) not a change in the nucleotide sequence." []
is_a: OGMS:0000045 ! disorder
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:40:27Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000047
name: genetic disorder
def: "A disorder whose etiology involves an abnormality in the nucleotide sequence of an organism's genome." []
is_a: OGMS:0000045 ! disorder
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:41:14Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000050
name: acquired genetic disorder
def: "A genetic disorder acquired by a single cell in an organism that leads to a population of cells within the organism bearing the disorder." []
is_a: OGMS:0000047 ! genetic disorder
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:43:09Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000051
name: constitutional genetic disorder
def: "A genetic disorder inherited during conception that is part of all cells in the organism." []
is_a: OGMS:0000047 ! genetic disorder
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T11:43:44Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000073
name: diagnosis
def: "The representation of a conclusion of a diagnostic process." []
is_a: OGMS:0000123 ! clinical data item
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/medo/Disease_and_Diagnosis.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-06-23T12:42:23Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000078
name: pathological anatomical structure
def: "An anatomical structure (FMA) is pathological whenever (1) it has come into being as a result of changes in some pre-existing canonical anatomical structure, (2) through processes other than the expression of the normal complement of genes of an organism of the given type, and (3) is predisposed to have health-related consequences for the organism in question manifested by symptoms and signs." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://ontology.buffalo.edu/bio/ISMB/ISMB_Bio-ontologies.pdf" xsd:string
property_value: IAO:0000232 "creation date: 2009-07-13T02:14:05Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000083
name: physical examination finding
def: "TODO: Define." []
is_a: OGMS:0000014 ! clinical finding
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000119 "http://code.google.com/p/ogms/issues/detail?id=26" xsd:string
property_value: IAO:0000232 "creation date: 2009-11-24T04:51:11Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000089
name: congenital disorder
def: "A structurally anomalous part of an organism acquired during fetal development and present at birth (but not necessarily hereditary) which is hypothesized to be harmful for the organism." []
is_a: BFO:0000040 ! material entity
property_value: IAO:0000117 "Albert Goldfain" xsd:string
property_value: IAO:0000118 "congenital malformation" xsd:string
property_value: IAO:0000119 "http://code.google.com/p/ogms/issues/detail?id=28" xsd:string
property_value: IAO:0000232 "creation date: 2010-03-31T04:51:11Z" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000102
name: injury
def: "A disorder that involves some structural damage that is immediately caused by a catastrophic external force." []
is_a: OGMS:0000045 ! disorder
property_value: IAO:0000116 "At the scale of organism (as opposed to the cellular scale or the population scale), an injury is typically the result of a catastrophic event. Consider the implications of making 'injury' a subtype of 'disorder'.\n\nNote: Adopted subtype of disorder, and injury can occur at the scale of organism down to cellular level." xsd:string
property_value: IAO:0000117 "Albert Goldfain\nSagar Jain" xsd:string
property_value: IAO:0000119 "http://groups.google.com/group/ogms-discuss/browse_thread/thread/ca0ad373f27774c5\n\nOGMS call adoption- 16 SEPT 2015\nhttps://docs.google.com/document/d/1iiV1-fTS7BUUSzDw3N_Afx42698YWf54-FOTY2NkAxo/edit" xsd:string
property_value: IAO:0000232 "creation date: 2011-09-20T09:57:44Z\nedited date: 30 SEPT 2015" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000123
name: clinical data item
def: "A data item that is about a patient and is the specified output of a health care process assay or diagnostic process" []
is_a: IAO:0000027 ! data item
property_value: IAO:0000232 "creation date: 2018-11-27" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OGMS:0000146
name: tissue disorder
def: "A disorder of some macroscopic part of a tissue" []
is_a: OGMS:0000045 ! disorder
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/ogms_import.owl

[Term]
id: OMRSE:00000007
name: gender role
def: "A human social role borne by a human being being realized in behaviour which is considered socially appropriate for individuals of a specific sex in the context of a specific culture." []
is_a: OMRSE:00000049 ! organism role
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000119 "http://en.wikipedia.org/wiki/Gender_role" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OMRSE:00000008
name: male gender role
def: "A gender role borne by a human being that is realized in behaviour which is considered socially appropriate for individuals of the male sex in the context of the culture in question." []
is_a: OMRSE:00000007 ! gender role
relationship: RO:0000052 OBI:0100026 ! characteristic of organism
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000118 "male gender" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OMRSE:00000009
name: female gender role
def: "A gender role borne by a human being that is realized in behaviour which is considered socially appropriate for individuals of the female sex in the context of the culture in question." []
is_a: OMRSE:00000007 ! gender role
relationship: RO:0000052 OBI:0100026 ! characteristic of organism
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000118 "female gender" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OMRSE:00000010
name: human health care role
def: "A role in human social processes that is realized by health care processes such as seeking or providing treatment for disease and injury, diagnosing disease and injury, or undergoing diagnosis. " []
is_a: OMRSE:00002072 ! role in human social processes
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000117 "William R. Hogan" xsd:string
property_value: IAO:0000118 "health care role" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OMRSE:00000011
name: patient role
def: "A role borne by an organism and that is realized by presenting to a health care provider in a clinical encounter." []
comment: In order to avoid the presumption of the formal structures and institutions of Western civilization, bearing a patient role does not entail that the organism presents at an official place of business, with an organization formally and legally registered with various gov't entities, with a person endowed by the gov't with certain certifications.
is_a: OMRSE:00000010 ! human health care role
is_a: OMRSE:00000049 ! organism role
property_value: IAO:0000117 "Amanda Hicks" xsd:string
property_value: IAO:0000117 "Mathias Brochhausen" xsd:string
property_value: IAO:0000118 "patient" xsd:string
property_value: IAO:0000119 "CAFE domain expert working group." xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OMRSE:00000030
name: human patient role
def: "A patient role that inheres in a human being." []
is_a: OMRSE:00000011 ! patient role
is_a: OMRSE:00000050 ! Homo sapiens role
intersection_of: OMRSE:00000011 ! patient role
intersection_of: RO:0000052 NCBITaxon:9606 ! characteristic of Homo sapiens
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OMRSE:00000048
name: material entity role
is_a: BFO:0000023 ! role
intersection_of: BFO:0000023 ! role
intersection_of: RO:0000052 BFO:0000040 ! characteristic of material entity
relationship: RO:0000052 BFO:0000040 {all_only="true"} ! characteristic of material entity
relationship: RO:0000052 BFO:0000040 ! characteristic of material entity
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OMRSE:00000049
name: organism role
is_a: OMRSE:00000048 ! material entity role
intersection_of: OMRSE:00000048 ! material entity role
intersection_of: RO:0000052 OBI:0100026 ! characteristic of organism
relationship: RO:0000052 OBI:0100026 {all_only="true"} ! characteristic of organism
relationship: RO:0000052 OBI:0100026 ! characteristic of organism
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OMRSE:00000050
name: Homo sapiens role
is_a: OMRSE:00000049 ! organism role
intersection_of: OMRSE:00000049 ! organism role
intersection_of: RO:0000052 NCBITaxon:9606 ! characteristic of Homo sapiens
relationship: RO:0000052 NCBITaxon:9606 ! characteristic of Homo sapiens
relationship: RO:0000052 NCBITaxon:9606 {all_only="true"} ! characteristic of Homo sapiens
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: OMRSE:00002072
name: role in human social processes
def: "A role that inheres in some entity that is realized in a social act." []
comment: Previous definition: A role played by an entity in human social processes.
is_a: OMRSE:00000048 ! material entity role
relationship: RO:0000052 BFO:0000040 {all_only="true"} ! characteristic of material entity
property_value: dc:contributor "Mathias Brochhausen" xsd:string
property_value: IAO:0000117 "Matthew Diller" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl

[Term]
id: UBERON:0000020
name: sense organ
namespace: uberon
def: "An organ that is capable of transducing sensory stimulus to the nervous system." [https://github.com/obophenotype/uberon/issues/549, https://orcid.org/0000-0002-6601-2165]
subset: uberon_slim
synonym: "organ of sense organ system" EXACT [OBOL:accepted]
synonym: "organ of sensory organ system" EXACT [OBOL:accepted]
synonym: "organ of sensory system" EXACT [OBOL:accepted]
synonym: "sense organ system organ" EXACT [OBOL:automatic]
synonym: "sensillum" NARROW [WBbt:0006929]
synonym: "sensor" RELATED []
synonym: "sensory organ" EXACT []
synonym: "sensory organ system organ" EXACT [OBOL:automatic]
synonym: "sensory system organ" EXACT [OBOL:accepted]
synonym: "Sinnesorgan" RELATED [BTO:0000202]
xref: AEO:0000094
xref: BSA:0000121
xref: BTO:0000202
xref: CALOHA:TS-2043
xref: EHDAA2:0001824
xref: EHDAA:500
xref: EMAPA:35955
xref: FBbt:00005155
xref: GAID:63
xref: HAO:0000930
xref: MA:0000017
xref: MESH:D012679
xref: NCIT:C33224
xref: SCTID:244485009
xref: UMLS:C0935626 {source="ncithesaurus:Organ_of_the_Special_Sense"}
xref: VHOG:0001407
xref: WBbt:0006929
is_a: UBERON:0000062 ! organ
relationship: part_of UBERON:0001032 ! sensory system
property_value: dc:contributor https://github.com/cmungall
property_value: foaf:depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png" xsd:anyURI
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: UBERON:0000061
name: anatomical structure
namespace: uberon
def: "Material anatomical entity that is a single connected structure with inherent 3D shape generated by coordinated expression of the organism's own genome." [CARO:0000003]
subset: common_anatomy
subset: upper_level
synonym: "biological structure" EXACT []
synonym: "connected biological structure" EXACT [CARO:0000003]
xref: AAO:0010825
xref: AEO:0000003
xref: BILA:0000003
xref: CARO:0000003
xref: EHDAA2:0003003
xref: EMAPA:0
xref: FBbt:00007001
xref: FMA:305751
xref: FMA:67135
xref: GAID:781
xref: HAO:0000003
xref: http://dbpedia.org/ontology/AnatomicalStructure
xref: MA:0003000
xref: MESH:D000825
xref: SCTID:362889002
xref: TAO:0000037
xref: TGMA:0001823
xref: VHOG:0001759
xref: XAO:0003000
xref: ZFA:0000037
is_a: UBERON:0000465 ! material anatomical entity
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:33090
property_value: RO:0002175 NCBITaxon:33208
property_value: RO:0002175 NCBITaxon:4751

[Term]
id: UBERON:0000062
name: organ
namespace: uberon
def: "Anatomical structure that performs a specific function or group of functions [WP]." [Wikipedia:Organ_(anatomy)]
subset: common_anatomy
subset: upper_level
synonym: "anatomical unit" RELATED []
synonym: "body organ" RELATED []
synonym: "element" RELATED [http://orcid.org/0000-0002-6601-2165]
xref: BIRNLEX:4
xref: CARO:0020004
xref: EFO:0000634
xref: EMAPA:35949
xref: ENVO:01000162
xref: FMA:67498
xref: MA:0003001
xref: NCIT:C13018
xref: SCTID:272625005
xref: UMLS:C0178784 {source="ncithesaurus:Organ"}
xref: WBbt:0003760
xref: Wikipedia:Organ_(anatomy)
is_a: UBERON:0010000 ! multicellular anatomical structure
relationship: capable_of GO:0008150 ! biological_process
relationship: part_of UBERON:0000467 ! anatomical system
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002161 NCBITaxon:110815 {source="Wikipedia"}
property_value: RO:0002175 NCBITaxon:33090
property_value: RO:0002175 NCBITaxon:33208
property_value: RO:0002175 NCBITaxon:4751
property_value: UBPROP:0000001 "Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions." xsd:string {source="GO:0048513"}
property_value: UBPROP:0000012 "CARO v1 does not include a generic 'organ' class, only simple and compound organ. CARO v2 may include organ, see https://github.com/obophenotype/caro/issues/4" xsd:string

[Term]
id: UBERON:0000064
name: organ part
namespace: uberon
def: "A multicellular structure that is a part of an organ." [http://orcid.org/0000-0002-6601-2165]
subset: common_anatomy
subset: efo_slim
subset: non_informative
subset: upper_level
synonym: "cardinal organ part" EXACT [FMA:82472]
synonym: "regional part of organ" RELATED [BIRNLEX:16]
xref: AAO:0011124
xref: BIRNLEX:16
xref: EFO:0000635
xref: FMA:82472
xref: SCTID:113343008
xref: SCTID:91717005
is_a: UBERON:0010000 ! multicellular anatomical structure
relationship: part_of UBERON:0000062 ! organ
property_value: IAO:0000232 "currently defined in a very broad sense, may be replaced by more specific classes in the future" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:33090
property_value: RO:0002175 NCBITaxon:33208
property_value: RO:0002175 NCBITaxon:4751

[Term]
id: UBERON:0000122
name: neuron projection bundle
namespace: uberon
alt_id: UBERON:0005163
def: "A fasciculated bundle of neuron projections (GO:0043005), largely or completely lacking synapses." [CARO:0001001, FBbt:00005099, FBC:DOS]
synonym: "funiculus" EXACT []
synonym: "nerve fiber bundle" EXACT [FBbt:00005099]
synonym: "neural fiber bundle" EXACT []
xref: CARO:0001001
xref: FBbt:00005099
xref: NLX:147821
is_a: UBERON:0005162 ! multi cell part structure
relationship: part_of UBERON:0001016 ! nervous system
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: UBERON:0000465
name: material anatomical entity
namespace: uberon
def: "Anatomical entity that has mass." [http://orcid.org/0000-0001-9114-8737]
subset: common_anatomy
subset: upper_level
xref: AAO:0010264
xref: AEO:0000006
xref: BILA:0000006
xref: CARO:0000006
xref: EHDAA2:0003006
xref: FBbt:00007016
xref: FMA:67165
xref: HAO:0000006
xref: TAO:0001836
xref: TGMA:0001826
xref: VHOG:0001721
is_a: BFO:0000040 ! material entity
is_a: UBERON:0001062 ! anatomical entity
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:33090
property_value: RO:0002175 NCBITaxon:33208
property_value: RO:0002175 NCBITaxon:4751

[Term]
id: UBERON:0000467
name: anatomical system
namespace: uberon
def: "Multicellular, connected anatomical structure that has multiple organs as parts and whose parts work together to achieve some shared function." [CARO:0000011]
subset: common_anatomy
subset: pheno_slim
subset: uberon_slim
subset: upper_level
synonym: "anatomical systems" RELATED OMO:0003004 [ZFA:0001439]
synonym: "body system" EXACT [BIRNLEX:14]
synonym: "connected anatomical system" EXACT [CARO:0000011]
synonym: "organ system" EXACT []
synonym: "system" BROAD [GO:0048731]
xref: AAO:0000007
xref: AEO:0000011
xref: BILA:0000011
xref: BIRNLEX:14
xref: BSA:0000049
xref: CALOHA:TS-2088
xref: CARO:0000011
xref: EHDAA2:0003011
xref: EHDAA:392
xref: EMAPA:16103
xref: EV:0100000
xref: FBbt:00004856
xref: FMA:7149
xref: galen:AnatomicalSystem
xref: HAO:0000011
xref: IDOMAL:0002460 {terms:contributor="https://orcid.org/0000-0003-4423-4370"}
xref: MA:0000003
xref: NCIT:C12919
xref: SCTID:278195005
xref: TAO:0001439
xref: TGMA:0001831
xref: UMLS:C0460002 {source="ncithesaurus:Organ_System"}
xref: VHOG:0001725
xref: WBbt:0005746
xref: WBbt:0005763
xref: Wikipedia:Organ_system
xref: XAO:0003002
xref: ZFA:0001439
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part UBERON:0000062 ! organ
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:33090
property_value: RO:0002175 NCBITaxon:33208
property_value: RO:0002175 NCBITaxon:4751
property_value: seeAlso EHDAA2:0001330

[Term]
id: UBERON:0000941
name: cranial nerve II
namespace: uberon
def: "Cranial nerve fiber tract which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, ISBN:0471888893]
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "02 optic nerve" EXACT [AAO:0010345]
synonym: "2n" BROAD OMO:0003000 [BIRNLEX:1640, NIFSTD:NeuroNames_abbrevSource]
synonym: "CN-II" RELATED [ZFA:0000435]
synonym: "cranial II" EXACT []
synonym: "nerve II" RELATED [NeuroNames:289]
synonym: "nervus opticus" EXACT LATIN []
synonym: "nervus opticus [II]" EXACT LATIN [FMA:50863, FMA:TA]
synonym: "optic" RELATED [TAO:0000435]
synonym: "optic II" EXACT [EHDAA2:0001313]
synonym: "optic II nerve" EXACT [EHDAA2:0001313]
synonym: "optic nerve" BROAD SENSU [FMA:50863, ZFA:0000435]
synonym: "optic nerve [II]" EXACT []
synonym: "second cranial nerve" EXACT []
xref: AAO:0010345
xref: BAMS:2n
xref: BAMS:IIn
xref: BAMS:nII
xref: BIRNLEX:1640
xref: CALOHA:TS-0713
xref: DHBA:15544
xref: EFO:0004258
xref: EHDAA2:0001313
xref: EHDAA:6788
xref: EMAPA:17575
xref: FMA:50863
xref: GAID:831
xref: HBA:9307
xref: MA:0001097
xref: MBA:848
xref: MESH:D009900
xref: NCIT:C12761
xref: neuronames:289 {source="BIRNLEX:1640"}
xref: SCTID:180938001
xref: TAO:0000435
xref: UMLS:C0029130 {source="ncithesaurus:Optic_Nerve", source="BIRNLEX:1640"}
xref: VHOG:0000543
xref: Wikipedia:Optic_nerve
xref: XAO:0000188
xref: ZFA:0000435
is_a: UBERON:0011215 ! central nervous system cell part cluster
is_a: UBERON:0034713 ! cranial neuron projection bundle
relationship: part_of UBERON:0002104 ! visual system
property_value: IAO:0000116 "Do not classify under 'cranial nerve', as this is not a true nerve - should be classified as evaginated sensory afferent[ISBN:0471888893]" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: UBPROP:0000001 "A collection of nerve cells that project visual information from the eyes to the brain. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000435", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000001 "Fibrous, somatic sensory element covered by a fibrous connective-tissue sheath and is continuous with the layer of nerve cells on the inner surface of the eye.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010345", ontology="AAO", source="AAO:EJS"}
property_value: UBPROP:0000003 "(...) an essentially similar sequence of events occurs during the embryonic development of the vertebrate eye. The eye initially develops as a single median evagination of the diencephalon that soon bifurcates to form the paired optic vesicles. As each optic vesicle grows towards the body surface, its proximal part narrows as the optic stalk, and its distal part invaginates to form a two-layered optic cup (reference 1); The (optic) stalk persists as the optic nerve (reference 2).[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000543", ontology="VHOG", source="ISBN:978-0030223693 Liem KF, Bemis WE, Walker WF, Grande L, Functional Anatomy of the Vertebrates: An Evolutionary Perspective (2001) p.429, http://medical-dictionary.thefreedictionary.com/optic+stalk", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "(relaion to eye): MA, XAO, AAO and BTO consider this part of the eye. This is in contrast to GO, FMA, EHDAA2 (FMA has a class 'intra-ocular part of optic nerve' which represents the region of overlap). Relation to brain: part of diencephalon in EHDAA2, ZFA. In NIF, has the optic nerve root as part, which is a feature part of the diencphalon" xsd:string {external_ontology="MA"}

[Term]
id: UBERON:0000966
name: retina
namespace: uberon
def: "The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates." [Wikipedia:Retina, ZFIN:curator]
comment: Currently this class encompasses only verteberate AOs but could in theory also include cephalopod - we may want to make a more specific class for vertebrate retina. note that this class excludes ommatidial retinas, as the retina must be part of an eyeball. Use the parent class photoreceptor array / light-sensitive tissue for arthropods
subset: efo_slim
subset: human_reference_atlas
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "inner layer of eyeball" EXACT []
synonym: "Netzhaut" RELATED [BTO:0001175]
synonym: "retina of camera-type eye" EXACT [GO:0060041]
synonym: "retinas" RELATED OMO:0003004 [ZFA:0000152]
synonym: "tunica interna of eyeball" EXACT []
xref: AAO:0010352
xref: BAMS:R
xref: BIRNLEX:1153
xref: BTO:0001175
xref: CALOHA:TS-0865
xref: EFO:0000832
xref: EHDAA2:0001627
xref: EHDAA:4757
xref: EMAPA:17168
xref: EV:0100348
xref: FMA:58301
xref: GAID:755
xref: MA:0000276
xref: MAT:0000142
xref: MBA:304325711
xref: MESH:D012160
xref: MIAA:0000142
xref: NCIT:C12343
xref: neuronames:1862
xref: NIFSTD_RETIRED:birnlex_1156
xref: SCTID:181171005
xref: TAO:0000152
xref: UMLS:C0035298 {source="BIRNLEX:1153", source="ncithesaurus:Retina"}
xref: UMLS:C1278894 {source="BIRNLEX:1153"}
xref: VHOG:0000229
xref: Wikipedia:Retina
xref: XAO:0000009
xref: ZFA:0000152
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005388 ! photoreceptor array
property_value: foaf:depiction "http://upload.wikimedia.org/wikipedia/commons/e/ed/Human_eye_cross-sectional_view_grayscale.png" xsd:anyURI
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002161 NCBITaxon:6656
property_value: RO:0002175 NCBITaxon:9606
property_value: UBPROP:0000001 "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000152", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000003 "The eye of the adult lamprey is remarkably similar to our own, and it possesses numerous features (including the expression of opsin genes) that are very similar to those of the eyes of jawed vertebrates. The lamprey's camera-like eye has a lens, an iris and extra-ocular muscles (five of them, unlike the eyes of jawed vertebrates, which have six), although it lacks intra-ocular muscles. Its retina also has a structure very similar to that of the retinas of other vertebrates, with three nuclear layers comprised of the cell bodies of photoreceptors and bipolar, horizontal, amacrine and ganglion cells. The southern hemisphere lamprey, Geotria australis, possesses five morphological classes of retinal photoreceptor and five classes of opsin, each of which is closely related to the opsins of jawed vertebrates. Given these similarities, we reach the inescapable conclusion that the last common ancestor of jawless and jawed vertebrates already possessed an eye that was comparable to that of extant lampreys and gnathostomes. Accordingly, a vertebrate camera-like eye must have been present by the time that lampreys and gnathostomes diverged, around 500 Mya.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000229", ontology="VHOG", source="DOI:10.1038/nrn2283 Lamb TD, Collin SP and Pugh EN Jr, Evolution of the vertebrate eye: opsins, photoreceptors, retina and eye cup. Nature Reviews Neuroscience (2007)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000007 "retinal" xsd:string

[Term]
id: UBERON:0000970
name: eye
namespace: uberon
def: "An organ that detects light." [https://orcid.org/0000-0002-6601-2165]
subset: efo_slim
subset: functional_classification
subset: human_reference_atlas
subset: major_organ
subset: organ_slim
subset: uberon_slim
synonym: "light-detecting organ" RELATED []
synonym: "visual apparatus" RELATED [EV:0100336]
xref: BILA:0000017
xref: BTO:0000439
xref: CALOHA:TS-0309
xref: EFO:0000827
xref: EV:0100336
xref: FBbt:00005162
xref: GAID:69
xref: MAT:0000140
xref: MESH:D005123
xref: MIAA:0000140
xref: Wikipedia:Eye
is_a: UBERON:0000020 ! sense organ
relationship: capable_of GO:0009584 ! detection of visible light
relationship: part_of UBERON:0002104 ! visual system
property_value: IAO:0000232 "This class encompasses a variety of light-detecting structures from different phyla with no implication of homology, from the compound insect eye to the vertebrate camera-type eye (distinct classes are provided for each)" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:9606
property_value: UBPROP:0000007 "ocular" xsd:string
property_value: UBPROP:0000007 "optic" xsd:string
property_value: UBPROP:0000010 "Note that whilst this is classified as an organ, it is in fact more of a unit composed of different structures: in Drosophila, it includes the interommatidial bristle as a part; we consider here the vertebrate eye to include the eyeball/eye proper as a part, with the eye having as parts (when present): eyelids, conjuctiva," xsd:string

[Term]
id: UBERON:0001016
name: nervous system
namespace: uberon
def: "The nervous system is an organ system containing predominantly neuron and glial cells. In bilaterally symmetrical organism, it is arranged in a network of tree-like structures connected to a central body. The main functions of the nervous system are to regulate and control body functions, and to receive sensory input, process this information, and generate behavior [CUMBO]." [BIRNLEX:844, ISBN:0-14-051288-8, ISBN:3110148986, NLM:nervous+system, WB:rynl, Wikipedia:Nervous_system, ZFIN:curator]
subset: cumbo
subset: efo_slim
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "nerve net" NARROW [Wikipedia:Nerve_net]
synonym: "neurological system" EXACT [GO:0050877]
synonym: "systema nervosum" RELATED LATIN [Wikipedia:Nervous_system]
xref: AAO:0000324
xref: BILA:0000079
xref: BIRNLEX:844
xref: BTO:0001484
xref: CALOHA:TS-1313
xref: EFO:0000802
xref: EHDAA2:0001246
xref: EHDAA:826
xref: EMAPA:16469
xref: EV:0100162
xref: FBbt:00005093
xref: FMA:7157
xref: GAID:466
xref: MA:0000016
xref: MAT:0000026
xref: MESH:D009420
xref: MIAA:0000026
xref: NCIT:C12755
xref: neuronames:3236
xref: SCTID:278196006
xref: TAO:0000396
xref: UMLS:C0027763 {source="ncithesaurus:Nervous_System"}
xref: VHOG:0000402
xref: WBbt:0005735
xref: Wikipedia:Nervous_system
xref: XAO:0000177
xref: ZFA:0000396
is_a: UBERON:0000467 ! anatomical system
relationship: capable_of GO:0050877 ! nervous system process
relationship: has_part CL:0000540 ! neuron
property_value: foaf:depiction "http://upload.wikimedia.org/wikipedia/commons/b/b2/TE-Nervous_system_diagram.svg" xsd:anyURI
property_value: foaf:depiction "http://upload.wikimedia.org/wikipedia/commons/b/ba/Nervous_system_diagram.png" xsd:anyURI
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002161 NCBITaxon:6040
property_value: UBPROP:0000001 "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0000396", ontology="TAO", source="ZFIN:curator"}
property_value: UBPROP:0000001 "Anatomical system consisting of nerve bodies and nerve fibers which regulate the response of the body to external and internal stimuli.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000324", ontology="AAO", source="AAO:BJB"}
property_value: UBPROP:0000003 "Nervous systems evolved in the ancestor of Eumetazoa.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000402", ontology="VHOG", source="ISBN:978-0198566694 Schmidt-Rhaesa A, The evolution of organ systems (2007) p.117", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000007 "nervous" xsd:string
property_value: UBPROP:0000007 "neural" xsd:string

[Term]
id: UBERON:0001032
name: sensory system
namespace: uberon
def: "Anatomical system that overlaps the nervous system and is responsible for receiving and processing sensory information." [Wikipedia:Sensory_system]
subset: efo_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "organa sensuum" EXACT LATIN [FMA:75259, FMA:TA]
synonym: "organa sensuum" RELATED LATIN [Wikipedia:Sensory_system]
synonym: "sense organ subsystem" EXACT []
synonym: "sense organs" EXACT [FMA:75259]
synonym: "sense organs set" EXACT [FMA:75259]
synonym: "sensory organ system" RELATED []
synonym: "sensory subsystem" EXACT []
synonym: "sensory systems" EXACT OMO:0003004 [TAO:0000282]
synonym: "set of sense organs" RELATED [FMA:75259]
xref: AAO:0000555
xref: BAMS:SEN
xref: BILA:0000099
xref: EFO:0000805
xref: EHDAA2:0003094
xref: EMAPA:16192
xref: FBbt:00007692
xref: FMA:75259
xref: MA:0002442
xref: MAT:0000031
xref: MIAA:0000031
xref: NLXANAT:090816
xref: TAO:0000282
xref: VHOG:0001674
xref: Wikipedia:Sensory_system
xref: XAO:0003194
xref: ZFA:0000282
is_a: UBERON:0015203 ! non-connected functional system
relationship: capable_of_part_of GO:0007600 ! sensory perception
relationship: overlaps UBERON:0001016 ! nervous system
property_value: foaf:depiction "http://upload.wikimedia.org/wikipedia/commons/c/c0/Gray722.png" xsd:anyURI
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: UBPROP:0000003 "An early step in the evolution of neural crest, therefore, may have been the origin of a specific dorsal neural cell population contributing to sensory processing; this would predate the divergence of the amphioxus and vertebrate lineages.[well established][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0001674", ontology="VHOG", source="DOI:10.1073/pnas.97.9.4449 Shimeld SM and Holland PW. Vertebrate innovations. PNAS (2000)", source="http://bgee.unil.ch/"}
property_value: UBPROP:0000012 "note the distinct between entire sensory system and individual system. this reconciles is_a and part_of distinctions between ssAOs" xsd:string

[Term]
id: UBERON:0001062
name: anatomical entity
namespace: uberon
def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [FMA:62955, http://orcid.org/0000-0001-9114-8737]
subset: common_anatomy
subset: upper_level
xref: AAO:0010841
xref: AEO:0000000
xref: BILA:0000000
xref: BIRNLEX:6
xref: CARO:0000000
xref: EHDAA2:0002229
xref: FBbt:10000000
xref: FMA:62955
xref: HAO:0000000
xref: MA:0000001
xref: NCIT:C12219
xref: TAO:0100000
xref: TGMA:0001822
xref: UMLS:C1515976 {source="ncithesaurus:Anatomic_Structure_System_or_Substance"}
xref: WBbt:0000100
xref: XAO:0000000
xref: ZFA:0100000
is_a: BFO:0000004 ! independent continuant
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:33090
property_value: RO:0002175 NCBITaxon:33208
property_value: RO:0002175 NCBITaxon:4751

[Term]
id: UBERON:0002104
name: visual system
namespace: uberon
alt_id: UBERON:0007036
def: "The sensory system subserving the sense of vision." [NIFSTD:FMAID_7191]
subset: pheno_slim
subset: uberon_slim
subset: vertebrate_core
synonym: "photosensory system" EXACT [BILA:0000140]
synonym: "visual organ system" EXACT []
xref: AAO:0000632
xref: BILA:0000140
xref: EMAPA:36003
xref: FMA:7191
xref: http://uri.neuinfo.org/nif/nifstd/FMAID_7191
xref: MA:0002444
xref: NCIT:C12888
xref: SCTID:281831001
xref: TAO:0001127
xref: UMLS:C0587900 {source="ncithesaurus:Visual_System"}
xref: Wikipedia:Visual_system
xref: XAO:0003198
xref: ZFA:0001127
is_a: UBERON:0001032 ! sensory system
relationship: capable_of_part_of GO:0007601 ! visual perception
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: UBPROP:0000001 "The sensory system used for sight.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0000632", ontology="AAO", source="AAO:EJS"}

[Term]
id: UBERON:0004121
name: ectoderm-derived structure
namespace: uberon
def: "An anatomical structure that develops (entirely or partially) from the ectoderm." [https://orcid.org/0000-0002-6601-2165]
subset: grouping_class
synonym: "ectodermal deriviative" EXACT [FBbt:00025990]
is_a: UBERON:0000061 ! anatomical structure
property_value: IAO:0000232 "Grouping term for query purposes" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: UBERON:0004529
name: anatomical projection
namespace: uberon
def: "A projection or outgrowth of tissue from a larger body or organ." [https://github.com/obophenotype/uberon/issues/39, Wikipedia:Process_(anatomy)]
subset: common_anatomy
subset: upper_level
synonym: "anatomical process" BROAD []
synonym: "anatomical protrusion" RELATED []
synonym: "flange" NARROW [VSAO:0000180]
synonym: "flanges" NARROW OMO:0003004 [VSAO:0000180]
synonym: "lamella" NARROW [VSAO:0000180]
synonym: "lamellae" NARROW OMO:0003004 [VSAO:0000180]
synonym: "lamina" NARROW [VSAO:0000180]
synonym: "laminae" NARROW [VSAO:0000180]
synonym: "organ process" NARROW []
synonym: "papilla" NARROW []
synonym: "process" BROAD [VSAO:0000180]
synonym: "process of organ" NARROW []
synonym: "processes" NARROW OMO:0003004 [VSAO:0000180]
synonym: "processus" EXACT LATIN [FMA:67601, FMA:TA]
synonym: "projection" EXACT []
synonym: "projection" NARROW [VSAO:0000180]
synonym: "projections" NARROW OMO:0003004 [VSAO:0000180]
synonym: "protrusion" RELATED []
synonym: "ridge" NARROW [VSAO:0000180]
synonym: "ridges" NARROW OMO:0003004 [VSAO:0000180]
synonym: "shelf" NARROW [VSAO:0000180]
synonym: "shelves" NARROW OMO:0003004 [VSAO:0000180]
synonym: "spine" RELATED []
xref: AAO:0010278
xref: FMA:67601
xref: galen:Ridge
xref: HAO:0000822
xref: NCIT:C61549
xref: TAO:0001834
xref: VSAO:0000180
xref: Wikipedia:Process_(anatomy)
xref: XAO:0004020
is_a: UBERON:0034768 ! morphological feature
relationship: part_of UBERON:0000062 ! organ
property_value: dc:contributor https://github.com/cmungall
property_value: dc:contributor https://github.com/wdahdul
property_value: IAO:0000116 "should be declared disjoint from organ, but in some ontologies (e.g. ZFA), structures such as neural spines are classified as bones (and hence organs)" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:33090
property_value: RO:0002175 NCBITaxon:33208
property_value: RO:0002175 NCBITaxon:4751
property_value: UBPROP:0000001 "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, or tissue.[AAO]" xsd:string {date_retrieved="2012-06-20", external_class="AAO:0010278", ontology="AAO", source="AAO:BJB"}
property_value: UBPROP:0000001 "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[TAO]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001834", ontology="TAO", source="TAO:wd"}
property_value: UBPROP:0000001 "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc.[VSAO]" xsd:string {date_retrieved="2012-08-14", external_class="VSAO:0000180", ontology="VSAO", source="TAO:curator"}

[Term]
id: UBERON:0004923
name: organ component layer
namespace: uberon
def: "A part of a wall of an organ that forms a layer." [http://orcid.org/0000-0002-6601-2165]
subset: upper_level
xref: FMA:82485
is_a: UBERON:0000064 ! organ part
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: UBERON:0005162
name: multi cell part structure
namespace: uberon
def: "A structure consisting of multiple cell components but which is not itself a cell and does not have (complete) cells as a part." [CARO:0001000]
subset: upper_level
synonym: "cell part cluster" RELATED [FMA:83115]
synonym: "multi-cell-component structure" EXACT [CARO:0001000]
synonym: "multi-cell-part structure" EXACT [CARO:0001000]
xref: AAO:0011000
xref: CARO:0001000
xref: FBbt:00007060
xref: FMA:83115
is_a: UBERON:0000061 ! anatomical structure
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: UBPROP:0000012 "we go with the FMA classification rather than the CARO one. FMA def: 'Anatomical cluster which has as direct parts cell parts from two or more cells.'" xsd:string {external_ontology="CARO", external_ontology="FMA"}

[Term]
id: UBERON:0005388
name: photoreceptor array
namespace: uberon
def: "An array of photoreceptors and any supporting cells found in an eye." [https://orcid.org/0000-0002-6601-2165]
synonym: "light-sensitive tissue" EXACT []
xref: FBbt:00004200
is_a: UBERON:0004923 ! organ component layer
relationship: part_of UBERON:0000970 ! eye
relationship: part_of UBERON:0001016 ! nervous system
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: UBERON:0010000
name: multicellular anatomical structure
namespace: uberon
def: "An anatomical structure that has more than one cell as a part." [CARO:0010000]
subset: common_anatomy
subset: upper_level
synonym: "multicellular structure" EXACT [FBbt:00100313]
xref: CARO:0010000
xref: FBbt:00100313
is_a: UBERON:0000061 ! anatomical structure
relationship: has_part CL:0000000 ! cell
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:33090
property_value: RO:0002175 NCBITaxon:33208
property_value: RO:0002175 NCBITaxon:4751

[Term]
id: UBERON:0011215
name: central nervous system cell part cluster
namespace: uberon
def: "A multi cell part structure that is part of a central nervous system." [OBOL:automatic]
subset: upper_level
synonym: "cell part cluster of neuraxis" EXACT [FMA:83143]
synonym: "neuraxis layer" EXACT [FMA:83143]
xref: FMA:83143
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:0005162 ! multi cell part structure
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: UBERON:0015203
name: non-connected functional system
namespace: uberon
def: "An anatomical group whose component structures share a common function." [AEO:0000093, AEO:JB, FBbt:00007278, FBC:DOS]
xref: AEO:0000093
xref: FBbt:00007278
is_a: UBERON:0034923 ! disconnected anatomical group
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: UBERON:0015212
name: lateral structure
namespace: uberon
def: "Any structure that is placed on one side of the left-right axis of a bilaterian." [http://orcid.org/0000-0002-6601-2165]
subset: grouping_class
subset: non_informative
is_a: UBERON:0000061 ! anatomical structure
relationship: part_of UBERON:0000465 ! material anatomical entity
property_value: IAO:0000232 "This class is primarily to implement taxon constraints. It may be removed in the future." xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: UBERON:0016930
name: ridge of tooth
namespace: uberon
def: "A linear flat evelation on a tooth." [Wikipedia:Dental_anatomy#Ridges]
synonym: "crista of tooth" EXACT []
synonym: "tooth ridge" EXACT []
xref: SCTID:245699009
is_a: UBERON:0004121 ! ectoderm-derived structure
is_a: UBERON:4100000 ! skeletal element projection
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: UBERON:0017295
name: cingulum of tooth
namespace: uberon
def: "The portion of the teeth, occurring on the lingual or palatal aspects, that forms a convex protuberance at the cervical third of the anatomic crown. It represents the lingual or palatal developmental lobe of these teeth." [Wikipedia:Cingulum_(tooth)]
synonym: "cingulum (dentis)" EXACT [FMA:56731]
synonym: "cingulum dentis" EXACT LATIN [FMA:56731, FMA:TA]
synonym: "tooth cingulum" EXACT [FMA:56731]
xref: FMA:56731
xref: SCTID:245650005
xref: Wikipedia:Cingulum_(tooth)
is_a: UBERON:0016930 ! ridge of tooth
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: UBPROP:0000012 "FMA has no definition but places this generically with upper, lower, canine, incisor subclasses. Wiktionary states cingulum is lower jaw molar only, and cingulid is upper molar only" xsd:string

[Term]
id: UBERON:0017297
name: cingulum of canine tooth
namespace: uberon
synonym: "canine tooth cingulum" EXACT [FMA:56734]
xref: FMA:56734
is_a: UBERON:0017295 ! cingulum of tooth
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: UBERON:0034713
name: cranial neuron projection bundle
namespace: uberon
def: "Any of the cranial nerves, or their central nervous system analogs (the optic tract, the epiphyseal tract). These analogs are not true nerves, and are instead evaginated sensory afferents emanating from the brain." [http://orcid.org/0000-0002-6601-2165, ISBN:0471888893]
subset: human_reference_atlas
synonym: "cranial nerve fiber bundle" RELATED [http://orcid.org/0000-0002-6601-2165]
synonym: "cranial nerve fiber tract" RELATED [http://orcid.org/0000-0002-6601-2165]
synonym: "cranial nerve or tract" RELATED [http://orcid.org/0000-0002-6601-2165]
synonym: "neuron projection bundle from brain" RELATED [http://orcid.org/0000-0002-6601-2165]
is_a: UBERON:0000122 ! neuron projection bundle
is_a: UBERON:0015212 ! lateral structure
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:9606

[Term]
id: UBERON:0034768
name: morphological feature
namespace: uberon
def: "A part of an organism or organ that is continuous with its surroundings and distinguished from its surroundings based on morphology." [http://orcid.org/0000-0002-6601-2165]
subset: common_anatomy
is_a: UBERON:0000061 ! anatomical structure
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:33090
property_value: RO:0002175 NCBITaxon:33208
property_value: RO:0002175 NCBITaxon:4751

[Term]
id: UBERON:0034923
name: disconnected anatomical group
namespace: uberon
def: "Material anatomical entity consisting of multiple anatomical structures that are not connected to each other." [CARO:0020000]
subset: common_anatomy
xref: CARO:0020000
xref: FBbt:00007276
is_a: UBERON:0000465 ! material anatomical entity
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0002175 NCBITaxon:33090
property_value: RO:0002175 NCBITaxon:33208
property_value: RO:0002175 NCBITaxon:4751

[Term]
id: UBERON:4100000
name: skeletal element projection
namespace: uberon
def: "Anatomical projection that is composed of bone or cartilage tissue." [PHENOSCAPE]
is_a: UBERON:0004529 ! anatomical projection
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Term]
id: neural-electronic-interface-ontology:NEIO_0000040
name: electrode array
is_a: OBI:0000968 ! device
relationship: has_part neural-electronic-interface-ontology:NEIO_0000041 ! electrode
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:created "2024-05-14T20:29:46Z" xsd:dateTime

[Term]
id: neural-electronic-interface-ontology:NEIO_0000041
name: electrode
is_a: OBI:0000968 ! device
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:created "2024-05-14T20:30:09Z" xsd:dateTime

[Term]
id: neural-electronic-interface-ontology:NEIO_0000042
name: neural electronic interface device
is_a: OBI:0000968 ! device
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:created "2024-05-14T20:39:16Z" xsd:dateTime

[Term]
id: neural-electronic-interface-ontology:NEIO_0000043
name: bionic vision device
is_a: neural-electronic-interface-ontology:NEIO_0000042 ! neural electronic interface device
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:created "2024-05-14T20:39:31Z" xsd:dateTime

[Term]
id: neural-electronic-interface-ontology:NEIO_0000045
name: bionic hearing device
is_a: neural-electronic-interface-ontology:NEIO_0000042 ! neural electronic interface device
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:created "2024-05-14T20:41:47Z" xsd:dateTime

[Term]
id: neural-electronic-interface-ontology:NEIO_0000046
name: brain computer interface
is_a: neural-electronic-interface-ontology:NEIO_0000042 ! neural electronic interface device
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:created "2024-05-14T20:43:31Z" xsd:dateTime

[Term]
id: neural-electronic-interface-ontology:NEIO_0000047
name: brain machine interface
is_a: neural-electronic-interface-ontology:NEIO_0000042 ! neural electronic interface device
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:created "2024-05-14T20:43:46Z" xsd:dateTime

[Term]
id: neural-electronic-interface-ontology:NEIO_0000048
name: cortical bionic vision device
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:created "2024-05-14T20:59:44Z" xsd:dateTime

[Term]
id: neural-electronic-interface-ontology:NEIO_0000049
name: retinal bionic vision device
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:created "2024-05-14T21:00:00Z" xsd:dateTime

[Term]
id: neural-electronic-interface-ontology:NEIO_0000101
name: Alpha AMS
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "rectilinear" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000052 "70" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000058 "2016" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "1600" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3026
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Alpha AMS is an advanced subretinal implant developed by Retina Implant AG, designed to assist individuals with retinitis pigmentosa, a condition marked by the progressive loss of vision. This implant is an evolution of its predecessor, the [Alpha IMS](/devices/alpha-ims), featuring enhanced functionality with 1,600 light-sensitive photodiodes that more effectively mimic the natural processing of visual signals. Implanted under the retina, the Alpha AMS converts light into electrical signals that are sent to the brain, enabling patients to detect light and dark, and recognize large objects and outlines." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000102
name: Alpha IMS
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "rectilinear" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000052 "70" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000058 "2013" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3027
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Alpha IMS is a subretinal implant developed by Retina Implant AG, aimed at restoring functional vision for individuals with retinitis pigmentosa, a group of genetic disorders characterized by progressive vision loss. Implanted beneath the retina, the device features a microchip equipped with 1,500 light-sensitive photodiodes, amplifiers, and electrodes. It functions by mimicking the role of photoreceptor cells: capturing light signals and converting them into electrical impulses transmitted to the brain via the optic nerve.\n\nAlpha IMS enables patients to perceive light patterns, assisting in navigation and object recognition. Clinical trials have shown that the implant can enhance visual perception, marking a significant advancement in vision restoration technologies." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000103
name: AmazingVision
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3028
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "This technology is an improved version of what the National Chiao Tung University’s Biomedical Electronics Translational Research Center (BETRC) has been developing. The BETRC created an artificial retina that uses two threads to transmit power from the eyewear worn by the user to a chip implanted in the eyeball. Amazing Vision has added a tiny solar panel to the chip that generates power by absorbing infrared light. This improvement reduces inflammation to the eye, reduces infection risk, and gives clearer and wider vision to the patient it was implanted in. Animal tests have already been conducted and have proven useful. Human testing was delayed due to the pandemic, but is soon to be conducted.\n" xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000104
name: Argus I
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "4x4" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000052 "800" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000053 "250/500" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "16" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3029
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "Argus I was the first-generation prototype of an epiretinal implant manufactured by Second Sight Medical Products." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000105
name: Argus II
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "6x10" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000052 "575" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000053 "225" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000058 "2011" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "60" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3030
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Argus II is a retinal prosthesis device developed by Second Sight Medical Products, designed for individuals with retinitis pigmentosa, a condition characterized by severe vision impairment. As an epiretinal implant, it is placed directly on the retina's surface and consists of a small camera on eyeglasses that captures visual data. This data is processed by a portable unit and transmitted wirelessly to an electrode array in the eye, stimulating the retina's remaining cells to send visual information to the brain.\n\nApproved by the FDA in 2013 and previously granted the CE Mark in 2011 in Europe, the Argus II was the first retinal implant to receive these certifications, allowing users to perform basic visual tasks.\n\nHowever, in 2019, Second Sight discontinued the Argus II due to financial challenges, shifting their focus to the development of the [Orion Visual Cortical Prosthesis System](/devices/orion), intended to stimulate the brain's visual cortex directly." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000106
name: ASR Artificial Silicon Retina
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000053 "25" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "5000 microphotodiodes" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3031
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "Optobionics’ Artificial Silicon Retina microchip (ASR) was invented by Dr. Alan Chow and his brother Vincent Chow.  Dr. Chow is an ophthalmic surgeon and assistant professor and his brother Vincent is an electrical engineer.\n\nThe ASR was designed to stimulate damaged retinal cells from within the retina to allow the cells to recreate visual signals that are processed and sent to the brain.\n\nThe ASR microchip is a silicon chip 2 mm in diameter, 25 microns in thickness and is less than the thickness of a human hair. It fabricated using technology similar to that used in the fabrication of computer chips and contains approximately 5,000 microscopic solar cells called “microphotodiodes,” each with its own stimulating electrode." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000107
name: AV-DONE
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "optic nerve" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000053 "50" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "7-Mar" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3032
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "AV-DONE is a direct optic nerve electrode that produces artificial vision in blind patients with retinitis pigmentosa. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000108
name: Bar-Ilan Hybrid Retinal Prosthesis
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3033
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Hybrid Retinal Prosthesis is a novel device that combines an implantable high density electrode array integrated with neurons. The electrode-neuron coupling allows for an increase in phosphene density while preserving retinal circuitry." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000109
name: Biohybrid
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "optic nerve" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3034
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000110
name: Boston Retinal Implant
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3035
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Boston Retinal Implant Project has developed a subretinal, hermetically-enclosed, chronically-implantable vision prosthesis to restore some useful vision to people with degenerative retinal diseases, especially retinitis pigmentosa and age-related macular degeneration. The prosthesis offers advantages over the competing epiretinal devices by providing a lower risk of eye infection, reduced erosion through the delicate tissues that cover the front of the eye (i.e. the conjunctiva), and the ability to place stimulating electrodes closer to retinal nerve cells. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000111
name: Brindley Cortical Implant
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "78" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3035
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000112
name: BS01
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "optogenetic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3036
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "BS01 is an optogenetic prosthesis." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000113
name: C-Sight
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "optic nerve" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "hexagonal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "13" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3037
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The C-Sight group proposed an implantable visual prosthesis based on optic nerve stimulation with an electrode array. (Chai et al. 2013)" xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000114
name: CORTIVIS
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "10x10" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000053 "25" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "100" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3038
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "CORTIVIS is a cortical visual neuroprosthesis that is based on the Utah Electrode Array. It will be used to improve the quality of life of profoundly blind people." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000115
name: Diamond Eye Implant
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "256" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3039
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "iBionics has developed the Diamond Eye implant with a high density of hermatically-enclosed electrodes, allowing for higher spatial resolution. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000116
name: Dobelle Eye
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3035
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000117
name: Electronic Visual Cortical Stimulator
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3040
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Cortivision team from Polystim neurotechnologies developed a visual cortical stimulator which consists of image sensing, image processing, and brain cortex stimulation to help blind patients acquire a sense of visual perception (Ghannoum 2010). They hope to elaborate a model of the layer 4 of the visual cortex V1 using a large-scale network of biologically realistic neurons." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000118
name: ELVIS
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "100" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3041
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "ELVIS, or 'Electronic Vision,' is a cortical implant that utilizes small currents to stimulate the visual cortex to produce vision. A microcomputer attached to the belt processes the outdoor scene and uses an AI algoirthm to help simplify objects for the user. Sensor Tech expects human trials to begin in 2023 and implants to be made available to the public in 2027." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000119
name: EPIRET1
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "hexagonal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3042
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000120
name: EPIRET2
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "hexagonal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3043
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000121
name: EPIRET3
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "hexagonal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000052 "500" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000053 "100" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "25" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3044
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The EPIRET3 implant is a remotely controlled, fully intraocular wireless device consisting of a receiver and a stimulator module. The stimulator is placed on the retinal surface. Data and energy are transmitted via an inductive link from outside the eye to the implant. Surgery included removal of the lens, vitrectomy, and implantation of the EPIRET3 device through a corneal incision." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000122
name: Gennaris
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "hexagonal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "473" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3045
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "Gennaris is a cortical visual prosthesis. It has been designed to bypass damage to the eye and optic nerve, to restore functional vision to people who have lost their sight through traumatic injury and conditions such as glaucoma and acquired retinal disease. Gennaris is currently preparing to undergo human clinical trials in Australia." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000123
name: HARP High-Acuity Retinal Prosthesis
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3046
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "HARP is a proprietary contact lens-shaped, 4000 pixel retinal prostheses currently in development by Iridium Medical Technologies. HARP is made for patients with Retinitis Pigmentosa and Age-Related Macular Degeneration." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000124
name: IMI Retinal Implant System
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "49" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3047
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000125
name: IMIE 256 Channel Intelligent Micro Implant Eye
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000053 "210" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "256" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3048
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The 256 Channel Intelligent Micro Eye Implant is an epiretinal implant developed by IntelliMicro Micro Co and Golden Eye Bionic. The implant features advanced technology for a micro implant with an extended electrode array." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000126
name: Intracortical Visual Prosthesis
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "16" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3049
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Intracortical Visual Prosthesis is currently being developed at the Illinois Institute of Technology and is being prepared for clinical testing." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000127
name: IRIS I
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000052 "120" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000053 "250" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "49" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3050
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "Pixium's first device, IRIS1 (Intelligent Retinal Implantable System), used an epi-retinal implant (on the retinal surface) and made it to clinical trials with the goal of obtaining CE Mark." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000128
name: IRIS II
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000058 "2016" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "150" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3051
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The IRIS II is a second generation epiretinal implant developed by Pixium vision to deliver light and shape perception, and to localize objects giving the patient the ability to negotiate unfamiliar environments. It consists of a 150 electrode array which allows for a better perceieved visual resolution by the user. The IRIS implant also uses asynchronous time-based image sensor technology resulting in faster, real-time image processing. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000129
name: Leuven Optic Nerve Visual Prosthesis
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "optic nerve" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "1" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3052
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The optic nerve visual prosthesis (ONVP) uses a self-sizing spiral cuff electrode to electrically stimulate the optic nerve and thus create the perception of phosphenes. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000130
name: Link N1
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "1024" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3053
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The N1 implant consists of 1024 electrodes distributed across 64 threads, composed mostly of polyimide with a thin gold or platinum conductor, which are inserted into the brain through an automated process performed by a surgical robot (R1). Each thread consists of an area of wires that contains electrodes capable of locating electrical signals in the brain, and a sensory area where the wire interacts with an electronic system that allows amplification and acquisition of the brain signal.\n\nNeuralink received FDA approval for human clinical trials with the N1 in May 2023. On January 29, 2024, [Musk said](https://twitter.com/elonmusk/status/1752098683024220632) that Neuralink had successfully implanted a Neuralink device in a human on the day prior, and that the patient was recovering:\"Initial results show promising neuron spike detection\"." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000131
name: Newcastle Visual Prosthesis
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "optogenetic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3054
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Optogenetic Retinal Prostheses uses an optoelectronic headset to capture the visual scene, have an LED array display the image onto photosensitized retinal cells and stimulate them with light. A key advantage of this approach is that it is possible to target ON and OFF bipolar cells." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000132
name: NR600
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "26x26" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3055
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The miniature Nano Retina device, the NR600 Implant, replaces the functionality of the damaged photoreceptor cells and creates the electrical stimulation required to activate the remaining healthy retinal cells. NR600 consists of two components; a miniature implantable chip and a set of eyeglasses worn by the patient." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000133
name: OpticSELINE
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "optic nerve" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3056
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "OpticSELENE is a device with intraneural electrodes that stimulates the optic nerve with light sensation to promote activation of the visual cortex-in to try to restore the sight of the blind. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000134
name: Optoelectronic Nanowire Retinal Prosthesis
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "optogenetic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3057
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000135
name: OPTOEPIRET
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3058
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "OPTOEPIRET extends the EPIRET implant with an integrated epiretinal recording of the image produced by the eye lens onto the retina." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000136
name: Orion Cortical Visual Prosthesis System
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3059
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Orion Visual Cortical Prosthesis System is an implanted cortical stimulation device intended to provide useful artificial vision to individuals who are blind due to a wide range of causes, including glaucoma, diabetic retinopathy, optic nerve injury or disease, and eye injury. (Eyewire, 2019)." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000137
name: OUReP
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3060
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "Okayama University-type retinal prosthesis (OUReP) is a photoelectric dye-coupled polyethylene film which generates electric potential in response to light and stimulates nearby neurons." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000138
name: Phoenix 99
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "suprachoroidal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "98" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3061
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The new Phoenix99 bionic eye being developed by engineers at the University of Sydney uses a camera linked to a retinal implant to help people with a debilitating problem with their vision to see again." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000139
name: POLYRETINA
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "hexagonal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000052 "120" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000053 "80" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "10,498" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3062
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "POLYRETINA is a foldable, wide-field, epiretinal prosthesis that can wirelessly stimulate retinal ganglion cells. The current prototype, POLYRETINA β, features 10,498 Titanium-Nitride electrodes (80μm diameter, 120μm pitch) distributed in a tiled fashion over a 13mm-diameter active area. Future prototypes are planned to miniaturize the electrode design and increase the number of electrodes (POLYRETINA γ: 18,693 electrodes, 60μm diameter, 90μm pitch; POLYRETINA δ: 42,235 electrodes, 60μm diameter, 90μm pitch). So far, device safety and efficacy has been assessed <emph>ex vivo</emph> and <emph>in vitro</emph>." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000140
name: PolySTIM
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3063
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "PolySTIM is an implantable wireless intracortical interface designed to aid the visually impaired. It uses a multi-chip intracortical microstimulation system for wireless data and power transmission. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000141
name: PRIMA
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "subretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "378" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3064
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Prima System is intended to partially replace the normal physiological function of the eyes photoreceptor cells by electrically stimulating the nerve cells of the inner retina, which then transmit the visual information to the brain via the optic nerve." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000142
name: QuantumRetina
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3065
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000143
name: Science Eye
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "optogenetic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3066
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The Science Eye is a visual prosthesis targeted at retinitis pigmentosa (RP) and dry age-related macular degeneration (AMD), two forms of serious blindness presently without good options for patients. The Science Eye is a combination device that uses an optogenetic gene therapy targeted at the cells of the optic nerve (the retinal ganglion cells) in conjunction with an implanted flexible thin-film, ultradense microLED display panel inserted directly over the retina. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000144
name: Seoul Artificial Retina
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "suprachoroidal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "4x4" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000052 "100" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "16" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3067
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "Seoul Artificial Retina Project started since the year 2000 at National University Seoul in Korea, aiming to develop a safe retinal prothesis implant for sight restoration. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000145
name: SiBionics Prosthesis
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "80" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3068
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The SIBionics prostheses features 60 electrodes, high system complexity, and an integrated circuit. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000146
name: Stanford Artificial Retina Project
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "epiretinal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3069
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The goal of the Stanford Artificial Retina Project is to develop an advanced artificial retina that will reproduce the precise retinal code at a cellular resolution with cell-type specificity, resulting in high-fidelity artificial vision." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000147
name: STS Retinal Prosthesis
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "suprachoroidal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "7x7" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000052 "700" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000053 "500" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "49" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3070
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The semichronic suprachoroid transscleral (STS) prosthesis is developed by Fujikado et al. in Japan. In 2011 and 2016, this retinal prosthesis was reported to be able to elicit phosphenes in all five patients with advanced RP without major complications. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000148
name: Suprachoroidal Prosthesis (24-channel)
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "suprachoroidal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3071
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The BVT Bionic Eye System is a suprachoroidal implant manufactured by Bionic Vision Technologies. The Gen1 Bionic Eye System was previously known as BVA 24 and was manufactured by the Bionic Vision Australia consortium in 2012. The commercialization rights and research rights of BVA were then taken over by Bionic Vision Technologies (BVT) in 2017. The Gen1 Bionic Eye System used a non-implantable percutaneous connector whereas the Gen2 Bionic Eye System is fully implantable. BVT is now developing the Gen3 Bionic Eye System." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000149
name: Suprachoroidal Prosthesis (44-channel)
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "suprachoroidal" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "44" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3072
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The 44 Channel Suprachoroidal Retinal Prosthesis is a second generation device boasting a higher electrode array and larger field of view than the first generation device launched by Bionic Vision Technologies. Since launching a 4-patient clinical trial in 2018, the results have indicated that the device offers functional benefits to patients while providing a safe and reproducible surgical procedure." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000150
name: Thalamic Visual Prosthesis
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "thalamic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3073
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "The goal of the MGH Thalamic Visual Prosthesis project is to build a machine-brain interface that can convey information from an external visual source directly to the visual parts of the brain for image processing. " xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000151
name: Utah Intracortical Electrode Array
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "cortical" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "10x10" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "100" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3074
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string
property_value: terms:description "Utah intracortical Electrode Array (UIEA) is a fixed geometry penetrating intracortical microelectrode array developed by a team at the University of Utah in the 1990s, aiming to provide a solid foundation for creating a cortically based visual prosthesis." xsd:string

[Term]
id: neural-electronic-interface-ontology:NEIO_0000152
name: VISNE
is_a: neural-electronic-interface-ontology:NEIO_0000043 ! bionic vision device
property_value: neural-electronic-interface-ontology:NEIO_0000044 "thalamic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000051 "4x6" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000059 "electronic" xsd:string
property_value: neural-electronic-interface-ontology:NEIO_0000060 "24" xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:contributor https://orcid.org/0009-0006-7251-3075
property_value: terms:created "2024-06-25T18:00:00Z" xsd:string

[Typedef]
id: OBI:0000304
name: is_manufactured_by
def: "c is_manufactured_by o means that there was a process p in which c was built in which a person, or set of people or machines did the work(bore the \"Manufacturer Role\", and those people/and or machines were members or of directed by the organization to do this." []
property_value: IAO:0000111 "is_manufactured_by" xsd:string
property_value: IAO:0000112 "http://www.affymetrix.com/products/arrays/specific/hgu133.affx is_manufactered_by http://www.affymetrix.com/ (if we decide to use these URIs for the actual entities)" xsd:string
property_value: IAO:0000114 IAO:0000123
property_value: IAO:0000117 "Alan Ruttenberg" xsd:string
property_value: IAO:0000117 "Liju Fan" xsd:string
property_value: IAO:0000118 "has_make" xsd:string
property_value: IAO:0000118 "has_manufacturer" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/obi_import.owl

[Typedef]
id: RO:0000052
name: characteristic of
def: "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence." []
comment: Note that this relation was previously called "inheres in", but was changed to be called "characteristic of" because BFO2 uses "inheres in" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.
property_value: IAO:0000111 "inheres in" xsd:string
property_value: IAO:0000112 "this fragility is a characteristic of this vase" xsd:string
property_value: IAO:0000112 "this red color is a characteristic of this apple" xsd:string
property_value: IAO:0000118 "inheres_in" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl
property_value: RO:0001900 RO:0001901
is_functional: true
is_a: RO:0002314 ! characteristic of part of
inverse_of: RO:0000053 ! bearer_of

[Typedef]
id: RO:0000053
name: bearer_of
name: has characteristic
def: "Inverse of characteristic_of" []
property_value: IAO:0000111 "bearer of" xsd:string
property_value: IAO:0000112 "this apple is bearer of this red color" xsd:string
property_value: IAO:0000112 "this vase is bearer of this fragility" xsd:string
property_value: IAO:0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist." xsd:string
property_value: IAO:0000118 "bearer_of" xsd:string
property_value: IAO:0000118 "is bearer of" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl
property_value: RO:0001900 RO:0001901
range: BFO:0000020 ! specifically dependent continuant
is_inverse_functional: true

[Typedef]
id: RO:0000085
name: has function
def: "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this enzyme has function this catalysis function (more colloquially: this enzyme has this catalysis function)" xsd:string
property_value: IAO:0000116 "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists." xsd:string
property_value: IAO:0000118 "has_function" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl
domain: BFO:0000004 ! independent continuant
is_a: RO:0000053 ! bearer_of

[Typedef]
id: RO:0000086
name: has quality
def: "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this apple has quality this red color" xsd:string
property_value: IAO:0000116 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist." xsd:string
property_value: IAO:0000118 "has_quality" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl
is_a: RO:0000053 ! bearer_of

[Typedef]
id: RO:0000087
name: has role
def: "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence" []
property_value: IAO:0000112 "this person has role this investigator role (more colloquially: this person has this role of investigator)" xsd:string
property_value: IAO:0000116 "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists." xsd:string
property_value: IAO:0000118 "has_role" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl
domain: BFO:0000004 ! independent continuant
range: BFO:0000023 ! role
is_a: RO:0000053 ! bearer_of

[Typedef]
id: RO:0000091
name: has disposition
def: "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence" []
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl
domain: BFO:0000004 ! independent continuant
is_a: RO:0000053 ! bearer_of

[Typedef]
id: RO:0002314
name: characteristic of part of
def: "q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w." []
property_value: IAO:0000116 "Because part_of is transitive, inheres in is a sub-relation of characteristic of part of" xsd:string
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: IAO:0000118 "inheres in part of" xsd:string
property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20064205
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl
property_value: RO:0001900 RO:0001901
property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/
is_a: RO:0002502 ! depends on

[Typedef]
id: RO:0002502
name: depends on
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/omrse_import.owl
property_value: seeAlso BFO:0000169

[Typedef]
id: capable_of
name: capable of
namespace: uberon
def: "A relation between a material entity (such as a cell) and a process, in which the material entity has the ability to carry out the process. " []
subset: ro-eco
xref: RO:0002215
property_value: IAO:0000112 "mechanosensory neuron capable of detection of mechanical stimulus involved in sensory perception (GO:0050974)" xsd:string
property_value: IAO:0000112 "osteoclast SubClassOf 'capable of' some 'bone resorption'" xsd:string
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: IAO:0000118 "has function realized in" xsd:string
property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/20123131
property_value: IAO:0000119 http://www.ncbi.nlm.nih.gov/pubmed/21208450
property_value: IAO:0000232 "For compatibility with BFO, this relation has a shortcut definition in which the expression \"capable of some P\" expands to \"bearer_of (some realized_by only P)\"." xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
domain: BFO:0000004 ! independent continuant
range: BFO:0000015 ! process
is_a: capable_of_part_of ! capable of part of

[Typedef]
id: capable_of_part_of
name: capable of part of
namespace: uberon
def: "c stands in this relationship to p if and only if there exists some p' such that c is capable_of p', and p' is part_of p." []
xref: RO:0002216
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: IAO:0000118 "has function in" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: seeAlso http://purl.obolibrary.org/obo/ro/docs/reflexivity/
holds_over_chain: capable_of part_of
is_a: causal_agent_in_process ! causal agent in process
is_a: functionally_related_to ! functionally related to

[Typedef]
id: causal_agent_in_process
name: causal agent in process
def: "A relationship between a material entity and a process where the material entity has some causal role that influences the process" []
xref: RO:0002500
property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
is_a: causal_relation_between_material_entity_and_a_process ! causal relation between material entity and a process

[Typedef]
id: causal_relation_between_material_entity_and_a_process
name: causal relation between material entity and a process
def: "A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity." []
xref: RO:0002595
property_value: IAO:0000116 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: IAO:0000119 http://purl.obolibrary.org/obo/ro/docs/causal-relations
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
domain: BFO:0000040 ! material entity
range: BFO:0000015 ! process
is_a: causally_related_to ! causally related to

[Typedef]
id: causally_related_to
name: causally related to
def: "relation that links two events, processes, states, or objects such that one event, process, state, or object (a cause) contributes to the production of another event, process, state, or object (an effect) where the cause is partly or wholly responsible for the effect, and the effect is partly or wholly dependent on the cause." [https://en.wikipedia.org/wiki/Causality]
xref: RO:0002410
property_value: IAO:0000116 "This branch of the ontology deals with causal relations between entities. It is divided into two branches: causal relations between occurrents/processes, and causal relations between material entities. We take an 'activity flow-centric approach', with the former as primary, and define causal relations between material entities in terms of causal relations between occurrents.\n\nTo define causal relations in an activity-flow type network, we make use of 3 primitives:\n\n * Temporal: how do the intervals of the two occurrents relate? \n * Is the causal relation regulatory?\n * Is the influence positive or negative?\n\nThe first of these can be formalized in terms of the Allen Interval Algebra. Informally, the 3 bins we care about are 'direct', 'indirect' or overlapping. Note that all causal relations should be classified under a RO temporal relation (see the branch under 'temporally related to'). Note that all causal relations are temporal, but not all temporal relations are causal. Two occurrents can be related in time without being causally connected. We take causal influence to be primitive, elucidated as being such that has the upstream changed, some qualities of the donwstream would necessarily be modified.\n\nFor the second, we consider a relationship to be regulatory if the system in which the activities occur is capable of altering the relationship to achieve some objective. This could include changing the rate of production of a molecule.\n\nFor the third, we consider the effect of the upstream process on the output(s) of the downstream process. If the level of output is increased, or the rate of production of the output is increased, then the direction is increased. Direction can be positive, negative or neutral or capable of either direction. Two positives in succession yield a positive, two negatives in succession yield a positive, otherwise the default assumption is that the net effect is canceled and the influence is neutral.\n\nEach of these 3 primitives can be composed to yield a cross-product of different relation types." xsd:string
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: IAO:0000232 "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect." xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Typedef]
id: functionally_related_to
name: functionally related to
namespace: uberon
def: "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities." []
xref: RO:0002328
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: IAO:0000232 "This is a grouping relation that collects relations used for the purpose of connecting structure and function" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl

[Typedef]
id: has_part
name: has part
name: has_part
namespace: quality
namespace: spatial
namespace: uberon
def: "a core relation that holds between a whole and its part" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_go_ontology
subset: http://purl.obolibrary.org/obo/valid_for_gocam
xref: BFO:0000051
property_value: IAO:0000111 "has part" xsd:string
property_value: IAO:0000112 "my body has part my brain (continuant parthood, two material entities)" xsd:string
property_value: IAO:0000112 "my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)" xsd:string
property_value: IAO:0000112 "this year has part this day (occurrent parthood)" xsd:string
property_value: IAO:0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part." xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string
property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)\n\nA continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'." xsd:string
property_value: IAO:0000118 "has_part" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0001900 RO:0001901
is_transitive: true
is_a: overlaps ! overlaps

[Typedef]
id: mereotopologically_related_to
name: mereotopologically related to
def: "A mereological relationship or a topological relationship" []
xref: RO:0002323
property_value: IAO:0000117 https://orcid.org/0000-0002-6601-2165
property_value: IAO:0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0001900 RO:0001901

[Typedef]
id: neural-electronic-interface-ontology:NEIO_0000100
name: device commercialized by
def: "A relation between a device and an organization in which the organization assists in the process of commercializing the device." []
property_value: IAO:0000112 "The commerical partner conducts clinic trials of the device." xsd:string
property_value: IAO:0000112 "The commerical partner sets up the manufacturing workflow." xsd:string
property_value: terms:contributor https://orcid.org/0000-0001-9625-1899
property_value: terms:created "2024-02-20T16:42:25Z" xsd:dateTime

[Typedef]
id: neural-electronic-interface-ontology:NEIO_0007000
name: device origin organization
property_value: terms:contributor https://orcid.org/0009-0006-7251-3026
property_value: terms:created "2024-04-26T18:21:54Z" xsd:dateTime

[Typedef]
id: overlaps
name: overlaps
namespace: spatial
namespace: uberon
def: "x overlaps y if and only if there exists some z such that x has part z and z part of y" []
def: "x overlaps y iff they have some part in common." [BSPO:cjm]
comment: "(forall (x y) (iff (overlaps x y) (exists (z) (and (part of z x) (part of z y)))))" CLIF []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_gocam
subset: ro-eco
xref: RO:0002131
property_value: IAO:0000114 IAO:0000125
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0001900 RO:0001901
holds_over_chain: has_part overlaps
holds_over_chain: has_part part_of
holds_over_chain: part_of part_of
is_symmetric: true
is_a: mereotopologically_related_to ! mereotopologically related to
transitive_over: part_of ! part_of
expand_expression_to: "http://purl.obolibrary.org/obo/BFO_0000051 some (http://purl.obolibrary.org/obo/BFO_0000050 some ?Y)" []

[Typedef]
id: part_of
name: part of
name: part_of
namespace: quality
namespace: spatial
namespace: uberon
def: "a core relation that holds between a part and its whole" []
subset: http://purl.obolibrary.org/obo/valid_for_go_annotation_extension
subset: http://purl.obolibrary.org/obo/valid_for_go_gp2term
subset: http://purl.obolibrary.org/obo/valid_for_go_ontology
subset: http://purl.obolibrary.org/obo/valid_for_gocam
xref: BFO:0000050
property_value: IAO:0000111 "is part of" xsd:string
property_value: IAO:0000112 "my brain is part of my body (continuant parthood, two material entities)" xsd:string
property_value: IAO:0000112 "my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)" xsd:string
property_value: IAO:0000112 "this day is part of this year (occurrent parthood)" xsd:string
property_value: IAO:0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other." xsd:string
property_value: IAO:0000116 "Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/" xsd:string
property_value: IAO:0000116 "Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)\n\nA continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'." xsd:string
property_value: IAO:0000118 "part_of" xsd:string
property_value: isDefinedBy neural-electronic-interface-ontology:neio/imports/uberon_import.owl
property_value: RO:0001900 RO:0001901
property_value: RO:0040042 BFO:0000002
property_value: RO:0040042 BFO:0000003
property_value: RO:0040042 BFO:0000004
property_value: RO:0040042 BFO:0000017
property_value: RO:0040042 BFO:0000019
property_value: RO:0040042 BFO:0000020
property_value: RO:0040042 BFO:0000031
property_value: seeAlso http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections
property_value: seeAlso http://ontologydesignpatterns.org/wiki/Submissions:PartOf
property_value: seeAlso "http://www.obofoundry.org/ro/#OBO_REL:part_of" xsd:string
property_value: seeAlso "https://wiki.geneontology.org/Part_of" xsd:anyURI
is_transitive: true
is_a: overlaps ! overlaps
inverse_of: has_part ! has part