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Benchmark suffix array for metagenomics dataset #7

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tibvdm opened this issue Mar 11, 2024 · 0 comments
Open
3 tasks
Tracked by #4

Benchmark suffix array for metagenomics dataset #7

tibvdm opened this issue Mar 11, 2024 · 0 comments
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@tibvdm
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tibvdm commented Mar 11, 2024 •
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Benchmark the index for a metagenomics dataset using the metabenchmark dataset. Try to look for an optimum index by looking at both the sparseness factor and the size of the k-mers.

  • Look for optimum index by looking at both the sparseness factor and the size of the k-mers.
  • Benchmark the current FST index
  • Benchmark the optimal SA index
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