From 5b5c6aca0c4beecbcdf61e982cbf9db3c59053e8 Mon Sep 17 00:00:00 2001 From: admin Date: Fri, 24 Nov 2023 01:02:08 +0000 Subject: [PATCH] Jenkins update build 173 errors --- requests/anndata_import@93dd15e13e6a.yml | 7 +++++++ requests/anndata_inspect@6f0d0c784f09.yml | 7 +++++++ requests/busco@2a5b8b9936bf.yml | 7 +++++++ requests/cat_bins@31853794ace2.yml | 7 +++++++ requests/chipseeker@8bd92f2404dd.yml | 7 +++++++ requests/edger@5bf899c13979.yml | 7 +++++++ requests/encyclopedia_encyclopedia@eac99effe86f.yml | 7 +++++++ requests/encyclopedia_walnut@0d2e93e01e68.yml | 7 +++++++ requests/funannotate_annotate@756376aeb1ae.yml | 7 +++++++ requests/funannotate_compare@e94187d661df.yml | 7 +++++++ requests/hicexplorer_hicpca@77919cc3618e.yml | 7 +++++++ requests/humann@fc6c328c292f.yml | 7 +++++++ requests/humann_rename_table@094ad9c068af.yml | 7 +++++++ requests/merqury@09c589057ee8.yml | 7 +++++++ requests/ncbi_blast_plus@d999e774072a.yml | 7 +++++++ requests/openms_targetedfileconverter@9c70a651a53e.yml | 7 +++++++ requests/openms_xmlvalidator@f036e8cf1a55.yml | 7 +++++++ requests/samtools_calmd@c89806670ab9.yml | 7 +++++++ requests/samtools_fastx@66e23b11feae.yml | 7 +++++++ requests/samtools_split@bd850490c7f1.yml | 7 +++++++ requests/samtools_view@6be888be75f9.yml | 7 +++++++ requests/scanpy_cluster_reduce_dimension@6acb08931836.yml | 7 +++++++ requests/scanpy_filter@a03ff8633507.yml | 7 +++++++ requests/scanpy_normalize@94c19fb1281c.yml | 7 +++++++ 24 files changed, 168 insertions(+) create mode 100644 requests/anndata_import@93dd15e13e6a.yml create mode 100644 requests/anndata_inspect@6f0d0c784f09.yml create mode 100644 requests/busco@2a5b8b9936bf.yml create mode 100644 requests/cat_bins@31853794ace2.yml create mode 100644 requests/chipseeker@8bd92f2404dd.yml create mode 100644 requests/edger@5bf899c13979.yml create mode 100644 requests/encyclopedia_encyclopedia@eac99effe86f.yml create mode 100644 requests/encyclopedia_walnut@0d2e93e01e68.yml create mode 100644 requests/funannotate_annotate@756376aeb1ae.yml create mode 100644 requests/funannotate_compare@e94187d661df.yml create mode 100644 requests/hicexplorer_hicpca@77919cc3618e.yml create mode 100644 requests/humann@fc6c328c292f.yml create mode 100644 requests/humann_rename_table@094ad9c068af.yml create mode 100644 requests/merqury@09c589057ee8.yml create mode 100644 requests/ncbi_blast_plus@d999e774072a.yml create mode 100644 requests/openms_targetedfileconverter@9c70a651a53e.yml create mode 100644 requests/openms_xmlvalidator@f036e8cf1a55.yml create mode 100644 requests/samtools_calmd@c89806670ab9.yml create mode 100644 requests/samtools_fastx@66e23b11feae.yml create mode 100644 requests/samtools_split@bd850490c7f1.yml create mode 100644 requests/samtools_view@6be888be75f9.yml create mode 100644 requests/scanpy_cluster_reduce_dimension@6acb08931836.yml create mode 100644 requests/scanpy_filter@a03ff8633507.yml create mode 100644 requests/scanpy_normalize@94c19fb1281c.yml diff --git a/requests/anndata_import@93dd15e13e6a.yml b/requests/anndata_import@93dd15e13e6a.yml new file mode 100644 index 000000000..623c6e033 --- /dev/null +++ b/requests/anndata_import@93dd15e13e6a.yml @@ -0,0 +1,7 @@ +tools: +- name: anndata_import + owner: iuc + revisions: + - 93dd15e13e6a + tool_panel_section_label: Single-cell + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/anndata_inspect@6f0d0c784f09.yml b/requests/anndata_inspect@6f0d0c784f09.yml new file mode 100644 index 000000000..28e47a254 --- /dev/null +++ b/requests/anndata_inspect@6f0d0c784f09.yml @@ -0,0 +1,7 @@ +tools: +- name: anndata_inspect + owner: iuc + revisions: + - 6f0d0c784f09 + tool_panel_section_label: Single-cell + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/busco@2a5b8b9936bf.yml b/requests/busco@2a5b8b9936bf.yml new file mode 100644 index 000000000..a2487bb4d --- /dev/null +++ b/requests/busco@2a5b8b9936bf.yml @@ -0,0 +1,7 @@ +tools: +- name: busco + owner: iuc + revisions: + - 2a5b8b9936bf + tool_panel_section_label: Assembly + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/cat_bins@31853794ace2.yml b/requests/cat_bins@31853794ace2.yml new file mode 100644 index 000000000..b7872c6c8 --- /dev/null +++ b/requests/cat_bins@31853794ace2.yml @@ -0,0 +1,7 @@ +tools: +- name: cat_bins + owner: iuc + revisions: + - 31853794ace2 + tool_panel_section_label: Metagenomic Analysis + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/chipseeker@8bd92f2404dd.yml b/requests/chipseeker@8bd92f2404dd.yml new file mode 100644 index 000000000..df24cbe71 --- /dev/null +++ b/requests/chipseeker@8bd92f2404dd.yml @@ -0,0 +1,7 @@ +tools: +- name: chipseeker + owner: rnateam + revisions: + - 8bd92f2404dd + tool_panel_section_label: Annotation + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/edger@5bf899c13979.yml b/requests/edger@5bf899c13979.yml new file mode 100644 index 000000000..e017af238 --- /dev/null +++ b/requests/edger@5bf899c13979.yml @@ -0,0 +1,7 @@ +tools: +- name: edger + owner: iuc + revisions: + - 5bf899c13979 + tool_panel_section_label: RNA-seq + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/encyclopedia_encyclopedia@eac99effe86f.yml b/requests/encyclopedia_encyclopedia@eac99effe86f.yml new file mode 100644 index 000000000..ad2d716d2 --- /dev/null +++ b/requests/encyclopedia_encyclopedia@eac99effe86f.yml @@ -0,0 +1,7 @@ +tools: +- name: encyclopedia_encyclopedia + owner: galaxyp + revisions: + - eac99effe86f + tool_panel_section_label: Proteomics + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/encyclopedia_walnut@0d2e93e01e68.yml b/requests/encyclopedia_walnut@0d2e93e01e68.yml new file mode 100644 index 000000000..e83131bfb --- /dev/null +++ b/requests/encyclopedia_walnut@0d2e93e01e68.yml @@ -0,0 +1,7 @@ +tools: +- name: encyclopedia_walnut + owner: galaxyp + revisions: + - 0d2e93e01e68 + tool_panel_section_label: Proteomics + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/funannotate_annotate@756376aeb1ae.yml b/requests/funannotate_annotate@756376aeb1ae.yml new file mode 100644 index 000000000..a2ad7ffa0 --- /dev/null +++ b/requests/funannotate_annotate@756376aeb1ae.yml @@ -0,0 +1,7 @@ +tools: +- name: funannotate_annotate + owner: iuc + revisions: + - 756376aeb1ae + tool_panel_section_label: Annotation + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/funannotate_compare@e94187d661df.yml b/requests/funannotate_compare@e94187d661df.yml new file mode 100644 index 000000000..0939a71e1 --- /dev/null +++ b/requests/funannotate_compare@e94187d661df.yml @@ -0,0 +1,7 @@ +tools: +- name: funannotate_compare + owner: iuc + revisions: + - e94187d661df + tool_panel_section_label: Annotation + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/hicexplorer_hicpca@77919cc3618e.yml b/requests/hicexplorer_hicpca@77919cc3618e.yml new file mode 100644 index 000000000..391bf5192 --- /dev/null +++ b/requests/hicexplorer_hicpca@77919cc3618e.yml @@ -0,0 +1,7 @@ +tools: +- name: hicexplorer_hicpca + owner: bgruening + revisions: + - 77919cc3618e + tool_panel_section_label: HiCExplorer + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/humann@fc6c328c292f.yml b/requests/humann@fc6c328c292f.yml new file mode 100644 index 000000000..493b85ba9 --- /dev/null +++ b/requests/humann@fc6c328c292f.yml @@ -0,0 +1,7 @@ +tools: +- name: humann + owner: iuc + revisions: + - fc6c328c292f + tool_panel_section_label: Metagenomic Analysis + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/humann_rename_table@094ad9c068af.yml b/requests/humann_rename_table@094ad9c068af.yml new file mode 100644 index 000000000..c0c131865 --- /dev/null +++ b/requests/humann_rename_table@094ad9c068af.yml @@ -0,0 +1,7 @@ +tools: +- name: humann_rename_table + owner: iuc + revisions: + - 094ad9c068af + tool_panel_section_label: Metagenomic Analysis + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/merqury@09c589057ee8.yml b/requests/merqury@09c589057ee8.yml new file mode 100644 index 000000000..886bd57c8 --- /dev/null +++ b/requests/merqury@09c589057ee8.yml @@ -0,0 +1,7 @@ +tools: +- name: merqury + owner: iuc + revisions: + - 09c589057ee8 + tool_panel_section_label: Assembly + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/ncbi_blast_plus@d999e774072a.yml b/requests/ncbi_blast_plus@d999e774072a.yml new file mode 100644 index 000000000..e7f639e2c --- /dev/null +++ b/requests/ncbi_blast_plus@d999e774072a.yml @@ -0,0 +1,7 @@ +tools: +- name: ncbi_blast_plus + owner: devteam + revisions: + - d999e774072a + tool_panel_section_label: Blast + + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/openms_targetedfileconverter@9c70a651a53e.yml b/requests/openms_targetedfileconverter@9c70a651a53e.yml new file mode 100644 index 000000000..12c0fa4cf --- /dev/null +++ b/requests/openms_targetedfileconverter@9c70a651a53e.yml @@ -0,0 +1,7 @@ +tools: +- name: openms_targetedfileconverter + owner: galaxyp + revisions: + - 9c70a651a53e + tool_panel_section_label: Proteomics + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/openms_xmlvalidator@f036e8cf1a55.yml b/requests/openms_xmlvalidator@f036e8cf1a55.yml new file mode 100644 index 000000000..3b753c4d1 --- /dev/null +++ b/requests/openms_xmlvalidator@f036e8cf1a55.yml @@ -0,0 +1,7 @@ +tools: +- name: openms_xmlvalidator + owner: galaxyp + revisions: + - f036e8cf1a55 + tool_panel_section_label: Proteomics + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/samtools_calmd@c89806670ab9.yml b/requests/samtools_calmd@c89806670ab9.yml new file mode 100644 index 000000000..a18c57944 --- /dev/null +++ b/requests/samtools_calmd@c89806670ab9.yml @@ -0,0 +1,7 @@ +tools: +- name: samtools_calmd + owner: devteam + revisions: + - c89806670ab9 + tool_panel_section_label: SAM/BAM + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/samtools_fastx@66e23b11feae.yml b/requests/samtools_fastx@66e23b11feae.yml new file mode 100644 index 000000000..bde0ea8f2 --- /dev/null +++ b/requests/samtools_fastx@66e23b11feae.yml @@ -0,0 +1,7 @@ +tools: +- name: samtools_fastx + owner: iuc + revisions: + - 66e23b11feae + tool_panel_section_label: SAM/BAM + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/samtools_split@bd850490c7f1.yml b/requests/samtools_split@bd850490c7f1.yml new file mode 100644 index 000000000..eb534eeb5 --- /dev/null +++ b/requests/samtools_split@bd850490c7f1.yml @@ -0,0 +1,7 @@ +tools: +- name: samtools_split + owner: devteam + revisions: + - bd850490c7f1 + tool_panel_section_label: SAM/BAM + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/samtools_view@6be888be75f9.yml b/requests/samtools_view@6be888be75f9.yml new file mode 100644 index 000000000..7f9c5a968 --- /dev/null +++ b/requests/samtools_view@6be888be75f9.yml @@ -0,0 +1,7 @@ +tools: +- name: samtools_view + owner: iuc + revisions: + - 6be888be75f9 + tool_panel_section_label: SAM/BAM + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/scanpy_cluster_reduce_dimension@6acb08931836.yml b/requests/scanpy_cluster_reduce_dimension@6acb08931836.yml new file mode 100644 index 000000000..04bbf68a6 --- /dev/null +++ b/requests/scanpy_cluster_reduce_dimension@6acb08931836.yml @@ -0,0 +1,7 @@ +tools: +- name: scanpy_cluster_reduce_dimension + owner: iuc + revisions: + - 6acb08931836 + tool_panel_section_label: Single-cell + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/scanpy_filter@a03ff8633507.yml b/requests/scanpy_filter@a03ff8633507.yml new file mode 100644 index 000000000..ce8190eb0 --- /dev/null +++ b/requests/scanpy_filter@a03ff8633507.yml @@ -0,0 +1,7 @@ +tools: +- name: scanpy_filter + owner: iuc + revisions: + - a03ff8633507 + tool_panel_section_label: Single-cell + tool_shed_url: toolshed.g2.bx.psu.edu diff --git a/requests/scanpy_normalize@94c19fb1281c.yml b/requests/scanpy_normalize@94c19fb1281c.yml new file mode 100644 index 000000000..addd17ef0 --- /dev/null +++ b/requests/scanpy_normalize@94c19fb1281c.yml @@ -0,0 +1,7 @@ +tools: +- name: scanpy_normalize + owner: iuc + revisions: + - 94c19fb1281c + tool_panel_section_label: Single-cell + tool_shed_url: toolshed.g2.bx.psu.edu