tests.yaml

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: build

on:
  push:
    branches: [master]
  pull_request:
    branches: [master]

concurrency:
  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
  cancel-in-progress: true

jobs:
  tests:

    runs-on: ubuntu-latest

    strategy:
      matrix:
        python-version: [3.7, 3.8, 3.9]

    steps:
    - uses: actions/checkout@v3

    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}

    - name: Cache pip
      uses: actions/cache@v3
      with:
        # path: ${{ env.pythonLocation }}
        # key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}
        # restore-keys: |
        #   ${{ env.pythonLocation }}-
        # This path is specific to Ubuntu
        path: ~/.cache/pip
        # Look to see if there is a cache hit for the corresponding requirements file
        key: ${{ runner.os }}-pip-${{ hashFiles('setup.py') }}
        restore-keys: |
          ${{ runner.os }}-pip-
          ${{ runner.os }}-

    - name: Install Dependencies
      run: |
        python -m pip install --upgrade pip
        python -m pip install -r requirements.txt -r requirements-test.txt
        python -m pip install .

    - name: PyTest
      run: |
        pytest --cov deepcell_spots

    - name: Coveralls
      if: env.COVERALLS_REPO_TOKEN != null
      env:
        COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
        COVERALLS_FLAG_NAME: ${{ matrix.python-version }}
        COVERALLS_PARALLEL: true
      run: |
        coveralls --service=github

  coveralls:
    name: Finish Coveralls
    needs: tests
    runs-on: ubuntu-latest
    steps:
    - name: Coveralls Finished
      uses: coverallsapp/github-action@master
      if: env.COVERALLS_REPO_TOKEN != null
      env:
        COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
      with:
        github-token: ${{ secrets.GITHUB_TOKEN }}
        parallel-finished: true