diff --git a/build/pkgs/configure/checksums.ini b/build/pkgs/configure/checksums.ini
index 63e08ba92ce..8a883c9d72f 100644
--- a/build/pkgs/configure/checksums.ini
+++ b/build/pkgs/configure/checksums.ini
@@ -1,3 +1,3 @@
 tarball=configure-VERSION.tar.gz
-sha1=a78a0025292f4831f84dc059734320de0e66e216
-sha256=c108de2bfbbf3f2543ada5742d5bc9a58df700d8b6125df92b1888f867b60174
+sha1=3ac8463056eddf76253b193268a2d5c49fab2f52
+sha256=62eb8b415d33c1ab6611333f2767d711c1c5fd0048830d47d41d15fbe53c3093
diff --git a/build/pkgs/configure/package-version.txt b/build/pkgs/configure/package-version.txt
index bfc9d17635e..07ca0a66dc2 100644
--- a/build/pkgs/configure/package-version.txt
+++ b/build/pkgs/configure/package-version.txt
@@ -1 +1 @@
-74119807d7989c879f2eee167e4e29af7c4f588a
+c1c19a8f29e6afcb0c22dfca59e1d0c34932be9c
diff --git a/src/sage/doctest/parsing.py b/src/sage/doctest/parsing.py
index 2b682a24d40..2e4823c7370 100644
--- a/src/sage/doctest/parsing.py
+++ b/src/sage/doctest/parsing.py
@@ -1688,6 +1688,12 @@ def do_fixup(self, want, got):
             got = ld_pie_warning_regex.sub('', got)
             did_fixup = True
 
+        if "R[write to console]" in got:
+            # Supress R warnings
+            r_warning_regex = re.compile(r'R\[write to console\]:.*')
+            got = r_warning_regex.sub('', got)
+            did_fixup = True
+
         if "Overriding pythran description" in got:
             # Some signatures changed in numpy-1.25.x that may yet be
             # reverted, but which pythran would otherwise warn about.