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Needs to be able to read GFA by itself #79

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adamnovak opened this issue Sep 25, 2020 · 1 comment

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adamnovak commented Sep 25, 2020

We need a GFA-to-HandleGraph parser available in the Python library, so people can read GFA and not need vg itself as a pre-importer.

We can still reject overlaps.

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rlorigro commented Oct 4, 2021

I have a simple GFA 1.0 reader implemented:
https://github.com/rlorigro/GFAse/blob/main/inc/GfaReader.hpp

And I am using it for my gfa_to_handle methods:
https://github.com/rlorigro/GFAse/blob/main/inc/gfa_to_handle.hpp

With some minor changes (removing the id_map maybe?) it could be copied into your lib probably

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