.gitlab-ci.yml

image: quay.io/vgteam/dind

before_script:
  - whoami
  - export DEBIAN_FRONTEND=noninteractive
  - apt-get -q -y update
  # Make sure we have some curl stuff for pycurl which we need for some Python stuff
  - apt-get -q -y install --no-upgrade docker.io python3-pip python3-virtualenv libcurl4-gnutls-dev python-dev libgnutls28-dev libssl-dev uuid-dev libgpgme11-dev libseccomp-dev cryptsetup-bin pkg-config
  # Ubuntu 20.04 doesn't seem to ship singularity, so we install from source
  # https://stackoverflow.com/questions/50537404/error-called-singularity-config-get-value-on-uninitialized-config-subsystem-wh
  - apt-get -q -y install wget libarchive-dev squashfs-tools
  - wget -q https://dl.google.com/go/go1.13.3.linux-amd64.tar.gz
  - tar xf go1.13.3.linux-amd64.tar.gz
  - rm go1.13.3.linux-amd64.tar.gz
  - mv go/bin/* /usr/bin/
  - mv go /usr/local/
  - mkdir -p $(go env GOPATH)/src/github.com/sylabs
  - pushd $(go env GOPATH)/src/github.com/sylabs
  - git clone https://github.com/sylabs/singularity.git
  - cd singularity
  - git checkout v3.4.2 
  - ./mconfig
  - cd ./builddir
  - make -j8
  - make install
  - popd
  - mkdir -p /usr/local/libexec/toil
  - mv /usr/local/bin/singularity /usr/local/libexec/toil/singularity-real
  - curl -sSL https://raw.githubusercontent.com/DataBiosphere/toil/e556fa059df029366de237566237584df6a49630/docker/singularity-wrapper.sh >/usr/local/bin/singularity
  - chmod 755 /usr/local/bin/singularity
  # TODO: Make Singularity use the Docker cache with a wrapper like Toil will.
  # Configure Docker to use a mirror for Docker Hub and restart the daemon
  # Set the registry as insecure because it is probably cluster-internal over plain HTTP.
  - |
    if [[ ! -z "${DOCKER_HUB_MIRROR}" ]] ; then
        echo "{\"registry-mirrors\": [\"${DOCKER_HUB_MIRROR}\"], \"insecure-registries\": [\"${DOCKER_HUB_MIRROR##*://}\"]}" | sudo tee /etc/docker/daemon.json
        export SINGULARITY_DOCKER_HUB_MIRROR="${DOCKER_HUB_MIRROR}"
    fi
  - startdocker || true
  - docker info
  # Build .pypirc with PyPI credentials
  - touch ~/.pypirc
  - chmod 600 ~/.pypirc
  - 'printf "[distutils]\nindex-servers =\n    pypi\n\n[pypi]\nusername: ${PYPI_USERNAME}\npassword: ${PYPI_PASSWORD}\n" > ~/.pypirc'

after_script:
  - stopdocker || true

stages:
  - test

test-job:
  stage: test
  script:
    - ./ci.sh 
  artifacts:
    # Let Gitlab see the junit report
    reports:
      junit: test-report.xml
    when: always