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Hi, I have a graph that constructed directly from aligned de novo assemblies. I used it as a reference and aligned short reads to this graph with vg giraffe. Then I got structural variants with vg pack and vg call and I got the final .vcf result. How can I classify the SV? I mean, how to define insertion,deletion,inversion,duplication?
Below is the screenshot of my result. I think I can only trace the evidence by AT in the INFO column.But I don't know how to do it. Do you have any good idea? Thank you so much!
The text was updated successfully, but these errors were encountered:
Hi, I have a graph that constructed directly from aligned de novo assemblies. I used it as a reference and aligned short reads to this graph with
vg giraffe
. Then I got structural variants withvg pack
andvg call
and I got the final.vcf
result. How can I classify the SV? I mean, how to defineinsertion
,deletion
,inversion
,duplication
?Below is the screenshot of my result. I think I can only trace the evidence by
AT
in theINFO
column.But I don't know how to do it. Do you have any good idea? Thank you so much!The text was updated successfully, but these errors were encountered: