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Attempting to install within a virtual environment running python 3.9.11 with pip install nis2pyr leads to the following error:
Collecting nis2pyr
Using cached nis2pyr-0.6.2-py3-none-any.whl (11 kB)
Collecting nd2==0.1.4
Using cached nd2-0.1.4-cp39-cp39-macosx_11_0_arm64.whl (132 kB)
Collecting opencv-python==4.5.3.56
Using cached opencv_python-4.5.3.56-cp39-cp39-macosx_11_0_arm64.whl (10.7 MB)
Collecting tifffile==2021.8.30
Using cached tifffile-2021.8.30-py3-none-any.whl (171 kB)
Collecting ome-types==0.2.9
Using cached ome_types-0.2.9-py3-none-any.whl (137 kB)
Collecting imagecodecs==2021.8.26
Using cached imagecodecs-2021.8.26.tar.gz (10.4 MB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [40 lines of output]
running egg_info
creating /private/var/folders/3m/ms22yqxx2dq38gxl025800nh0000gn/T/pip-pip-egg-info-u3dftrg8/imagecodecs.egg-info
writing /private/var/folders/3m/ms22yqxx2dq38gxl025800nh0000gn/T/pip-pip-egg-info-u3dftrg8/imagecodecs.egg-info/PKG-INFO
writing dependency_links to /private/var/folders/3m/ms22yqxx2dq38gxl025800nh0000gn/T/pip-pip-egg-info-u3dftrg8/imagecodecs.egg-info/dependency_links.txt
writing entry points to /private/var/folders/3m/ms22yqxx2dq38gxl025800nh0000gn/T/pip-pip-egg-info-u3dftrg8/imagecodecs.egg-info/entry_points.txt
writing requirements to /private/var/folders/3m/ms22yqxx2dq38gxl025800nh0000gn/T/pip-pip-egg-info-u3dftrg8/imagecodecs.egg-info/requires.txt
writing top-level names to /private/var/folders/3m/ms22yqxx2dq38gxl025800nh0000gn/T/pip-pip-egg-info-u3dftrg8/imagecodecs.egg-info/top_level.txt
writing manifest file '/private/var/folders/3m/ms22yqxx2dq38gxl025800nh0000gn/T/pip-pip-egg-info-u3dftrg8/imagecodecs.egg-info/SOURCES.txt'
Traceback (most recent call last):
File "<string>", line 2, in <module>
File "<pip-setuptools-caller>", line 34, in <module>
File "/private/var/folders/3m/ms22yqxx2dq38gxl025800nh0000gn/T/pip-install-h1tf5g4f/imagecodecs_20b8e6a946b64134bb551a3a87b00a95/setup.py", line 613, in <module>
setup(
File "/Users/rogangrant/Documents/GitHub/image_analysis/image_analysis_venv/lib/python3.9/site-packages/setuptools/__init__.py", line 153, in setup
return distutils.core.setup(**attrs)
File "/Users/rogangrant/.pyenv/versions/3.9.11/lib/python3.9/distutils/core.py", line 148, in setup
dist.run_commands()
File "/Users/rogangrant/.pyenv/versions/3.9.11/lib/python3.9/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/Users/rogangrant/.pyenv/versions/3.9.11/lib/python3.9/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/Users/rogangrant/Documents/GitHub/image_analysis/image_analysis_venv/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 299, in run
self.find_sources()
File "/Users/rogangrant/Documents/GitHub/image_analysis/image_analysis_venv/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 306, in find_sources
mm.run()
File "/Users/rogangrant/Documents/GitHub/image_analysis/image_analysis_venv/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 541, in run
self.add_defaults()
File "/Users/rogangrant/Documents/GitHub/image_analysis/image_analysis_venv/lib/python3.9/site-packages/setuptools/command/egg_info.py", line 578, in add_defaults
sdist.add_defaults(self)
File "/Users/rogangrant/.pyenv/versions/3.9.11/lib/python3.9/distutils/command/sdist.py", line 228, in add_defaults
self._add_defaults_ext()
File "/Users/rogangrant/.pyenv/versions/3.9.11/lib/python3.9/distutils/command/sdist.py", line 311, in _add_defaults_ext
build_ext = self.get_finalized_command('build_ext')
File "/Users/rogangrant/.pyenv/versions/3.9.11/lib/python3.9/distutils/cmd.py", line 299, in get_finalized_command
cmd_obj.ensure_finalized()
File "/Users/rogangrant/.pyenv/versions/3.9.11/lib/python3.9/distutils/cmd.py", line 107, in ensure_finalized
self.finalize_options()
File "/private/var/folders/3m/ms22yqxx2dq38gxl025800nh0000gn/T/pip-install-h1tf5g4f/imagecodecs_20b8e6a946b64134bb551a3a87b00a95/setup.py", line 582, in finalize_options
import numpy
ModuleNotFoundError: No module named 'numpy'
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
This error persists if I specify commit fae5229. If you have any insight, I would very much appreciate it. Thank you for your help!
The text was updated successfully, but these errors were encountered:
Attempting to install within a virtual environment running python 3.9.11 with
pip install nis2pyr
leads to the following error:This error persists if I specify commit fae5229. If you have any insight, I would very much appreciate it. Thank you for your help!
The text was updated successfully, but these errors were encountered: