Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

One of the pred tf table has error format #12

Open
yangyxt opened this issue Aug 13, 2020 · 3 comments
Open

One of the pred tf table has error format #12

yangyxt opened this issue Aug 13, 2020 · 3 comments

Comments

@yangyxt
Copy link

yangyxt commented Aug 13, 2020

The pred tf table is named after prediction6mer.Mus_musculus|M01332_1.94d|Berger08|Lhx9_3492.1.txt
When reading the table with off-line mode qbic.py, it shows an error like this:
image
I later searched all the pred tf tables for error column fields and only found this file containing rows with extra column fields.
Here I provide a screenshot for these rows (the first column is the row number value):
image

Pls take a look at this table and amend the format. Thanks!

@vincentiusmartin
Copy link
Owner

thanks for pointing this out! I will leave this issue as open until I get a chance to fix it. Meanwhile, please download the correct version here https://duke.box.com/s/nfn6g4u0a4xe5ufat4lolb9trt66e0a2

@yangyxt
Copy link
Author

yangyxt commented Aug 13, 2020

thanks for pointing this out! I will leave this issue as open until I get a chance to fix it. Meanwhile, please download the correct version here https://duke.box.com/s/nfn6g4u0a4xe5ufat4lolb9trt66e0a2

Already downloaded. Thanks!

@yangyxt
Copy link
Author

yangyxt commented Aug 13, 2020

Hi, I just found another pred table named after suffix .csv instead of .txt.
prediction6mer.Homo_sapiens|NA|MartinZhao2019|RELA.csv

So it will cause the file not found error in executing qbic.py.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants