Anatomy transform different between hidden volume and volume window

[emilykubota]

I'm trying to write out functional overlays as nifti files, and there is an error for some of my subjects when I initialize a hidden volume view, but not when I write out the overlay from the GUI (volume window).

I tracked it down to the function nifti2mrVistaAnat, which seems to be called when a volume window is opened, but not when a hidden volume view is initialized. I think this transform should happen in both the hidden volume view and the volume window, but I wanted to check to make sure.

I have data for a test subject and my code in the repository hiddenVolumeQuestion.

Thank you!!