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_pkgdown.yml
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_pkgdown.yml
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url: https://wadpac.github.io/GGIR/
template:
bootstrap: 5
bslib:
primary: "#0054AD"
border-radius: 0.5rem
btn-border-radius: 0.25rem
includes:
in_header:
<script defer data-domain="pkgdown.r-lib.org,all.tidyverse.org" src="https://plausible.io/js/plausible.js"></script>
opengraph:
twitter:
creator: "@RpackageGGIR"
card: summary_large_image
authors:
sidebar:
roles: [aut]
home:
title: GGIR R Package
navbar:
components:
intro:
text: Get started
href: articles/chapter0_GetStarted.html
installation:
text: Installation
href: articles/chapter0_Installation.html
help:
text: Need help?
href: articles/chapter0_Support.html
contributing:
text: Contributing
href: articles/chapter0_Contributing.html
twitter:
icon: fa-twitter
href: https://twitter.com/RpackageGGIR
aria-label: Twitter
chapters:
text: The book
menu:
- text: 1. What is GGIR
href: articles/chapter1_WhatIsGGIR.html
- text: 2. The GGIR Pipeline
href: articles/chapter2_Pipeline.html
- text: 3. Data Quality Assurance
href: articles/chapter3_QualityAssessment.html
- text: 4. From Raw Data to Acceleration Metrics
href: articles/chapter4_AccMetrics.html
- text: 5. Accounting for Study Protocol
href: articles/chapter5_StudyProtocol.html
- text: 6. How GGIR Deals with Invalid Data
href: articles/chapter6_DataImputation.html
- text: 7. Describing the Data Without Knowing Sleep
href: articles/chapter7_DescribingDataWithoutKnowingSleep.html
- text: 8. Sleep Fundamentals - Sustained Inactivity Bout Detection (SIB)
href: articles/chapter8_SleepFundamentalsSibs.html
- text: 9. Sleep Fundamentals - Guiding Sleep Detection
href: articles/chapter9_SleepFundamentalsGuiders.html
- text: 10. Sleep Analysis
href: articles/chapter10_SleepAnalysis.html
- text: 11. Physical Activity Fundamentals - Describing the data with cut-points
href: articles/chapter11_DescribingDataCutPoints.html
- text: 12. Time-Use Analysis
href: articles/chapter12_TimeUseAnalysis.html
- text: 13. Circadian Rhythm Analysis
href: articles/chapter13_CircadianRhythm.html
annexes:
text: Annexes
menu:
- text: GGIR Parameters
href: articles/GGIRParameters.html
- text: GGIR Output
href: articles/GGIRoutput.html
- text: Reading csv files with raw data
href: articles/readmyacccsv.html
- text: Embedding external functions in GGIR
href: articles/ExternalFunction.html
- text: Published cut-points and how to use them
href: articles/CutPoints.html
- text: Day-segment analyses
href: articles/TutorialDaySegmentAnalyses.html
- text: Household co-analysis
href: articles/HouseHoldCoanalysis.html
- text: Cookbook
href: articles/Cookbook.html
structure:
left: [chapters, annexes, installation, intro, news, contributing, help]
right: [search, github, twitter]
news:
cran_dates: TRUE
releases:
- text: "Version 3.1-0"
href: https://www.accelting.com/updates/ggir-release-3-1-0/
- text: "Version 3.0-0"
href: https://www.accelting.com/updates/ggir-release-3-0-0/
- text: "Version 2.9-0"
href: https://www.accelting.com/updates/ggir-release-2-9-0/
- text: "Version 2.8-0"
href: https://www.accelting.com/updates/ggir-release-2-8-0/
- text: "Version 2.7-1"
href: https://www.accelting.com/updates/ggir-release-2-7-1/
- text: "Version 2.6-0"
href: https://www.accelting.com/updates/ggir-release-2-6-0/
- text: "Version 2.5-0"
href: https://www.accelting.com/updates/ggir-release-2-5-0/
search:
exclude: ['news/index.html', 'articles/GGIR.html',
'articles/cosinorAnalyses.html', 'articles/appendRecords.html', 'articles/applyCosinorAnalyses.html',
'reference/cosinorAnalyses.html', 'reference/appendRecords.html', 'reference/applyCosinorAnalyses.html',
'reference/applyExtFunction.html', 'reference/CalcSleepRegularityIndex.html',
'reference/checkMilestoneFolders.html', 'reference/check_log.html',
'reference/check_myfun.html', 'reference/check_params.html', 'reference/convertEpochData.html',
'reference/correctOlderMilestoneData.html', 'reference/cosinorAnalyses.html',
'reference/createConfigFile.html', 'reference/create_test_acc_csv.html',
'reference/create_test_sleeplog_csv.html', 'reference/data.calibrate.html',
'reference/data.getmeta.html', 'reference/data.inspectfile.html', 'reference/data.metalong.html',
'reference/data.ts.html', 'reference/datadir2fnames.html', 'reference/detect_nonwear_clipping.html',
'reference/extractID.html', 'reference/extract_params.html', 'reference/g.abr.day.names.html',
'reference/g.analyse.avday.html', 'reference/g.analyse.html', 'reference/g.analyse.perday.html',
'reference/g.analyse.perfile.html', 'reference/g.applymetrics.html', 'reference/g.calibrate.html',
'reference/g.conv.actlog.html', 'reference/g.convert.part2.long.html', 'reference/g.create.sp.mat.html',
'reference/g.detecmidnight.html', 'reference/g.dotorcomma.html', 'reference/g.extractheadervars.html',
'reference/g.fragmentation.html', 'reference/g.getbout.html', 'reference/g.getM5L5.html',
'reference/g.getmeta.html', 'reference/g.getstarttime.html', 'reference/g.impute.html',
'reference/g.imputeTimegaps.html', 'reference/g.inspectfile.html', 'reference/g.intensitygradient.html',
'reference/g.IVIS.html', 'reference/g.loadlog.html', 'reference/g.part1.html', 'reference/g.part2.html',
'reference/g.part3.html', 'reference/g.part4.html', 'reference/g.part4_extradctid.html',
'reference/g.part5.addfirstwake.html', 'reference/g.part5.addsib.html', 'reference/g.part5.analyseRest.html',
'reference/g.part5.classifyNaps.html', 'reference/g.part5.definedays.html',
'reference/g.part5.fixmissingnight.html', 'reference/g.part5.handle_lux_extremes.html',
'reference/g.part5.html', 'reference/g.part5.lux_persegment.html',
'reference/g.part5.ontsetwaketiming.html', 'reference/g.part5.savetimeseries.html',
'reference/g.part5.wakesleepwindows.html', 'reference/g.part5_analyseSegment.html',
'reference/g.part5_initialise_ts.html', 'reference/g.part6.html', 'reference/g.plot.html',
'reference/g.plot5.html', 'reference/g.readaccfile.html', 'reference/g.readtemp_movisens.html',
'reference/g.report.part2.html', 'reference/g.report.part4.html', 'reference/g.report.part5.html',
'reference/g.report.part5_dictionary.html', 'reference/g.report.part6.html',
'reference/g.shell.GGIR.html', 'reference/g.sib.det.html', 'reference/g.sib.plot.html',
'reference/g.sib.sum.html', 'reference/g.sibreport.html', 'reference/g.weardec.html',
'reference/getfolderstructure.html', 'reference/get_nw_clip_block_params.html',
'reference/get_starttime_weekday_truncdata.html', 'reference/GGIR-package.html',
'reference/GGIR.html', 'reference/HASIB.html', 'reference/HASPT.html', 'reference/identify_levels.html',
'reference/index.html', 'reference/is.ISO8601.html', 'reference/isfilelist.html', 'reference/ismovisens.html',
'reference/iso8601chartime2POSIX.html', 'reference/is_this_a_dst_night.html',
'reference/load_params.html', 'reference/parametersVignette.html', 'reference/part6AlignIndividuals.html',
'reference/part6PairwiseAggregation.html', 'reference/POSIXtime2iso8601.html',
'reference/read.myacc.csv.html', 'reference/ShellDoc2Vignette.html',
'reference/tidyup_df.html', 'reference/updateBlocksize.html']