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zP6>fa#qDn2j*ANtx$m+;*`cnVQ8!0xX1sWJaBDNa9oF7>cQK{?DgoWDj@vB9Bj4WX zSK|Fug4zA@&#oVqZa64B&Z4kI4tkbhmu}K8!sy4p zK(0TK!|@dvVM09GtkP|?TZy=e7cuwTwZ?h>Zu|LHI+I0m{nT_Nmm{5;fS-fuAKM#2 zEzjDys26kP_s{BjN*H;%7<=}IWVJP@53pX{$S`~x116-Dz@v4sporw0~U=dwza-Fnf+KCLC&Byc%kL#)r=; zCOwYjbKNt96sv=lf*aw%eqMF$LC1Snw@>w^gd$YyhK}y;Znawq4Wn?6H?9eV&Lvv! zFP6*L=pa&tIKhaRnJQB;brQ~@9Vm1|^yh)lEpi<|d6S}wSDVhxiZ976AjnO}{a2%N zro;Jrz{4%b&-Xu=kbuDdV#317s32i7K7QfQ<}^9kWFG0CaR0Ia47SO5S3 delta 31 gcmaEKit*7Y#t9be#zw|Q7A7VW?L}eCjnV9>0IdrNVgLXD diff --git a/vignettes/articles/HMP_2012_16S_gingival_V35.Rmd b/vignettes/articles/HMP_2012_16S_gingival_V35.Rmd index c3a89b6..0c33d99 100644 --- a/vignettes/articles/HMP_2012_16S_gingival_V35.Rmd +++ b/vignettes/articles/HMP_2012_16S_gingival_V35.Rmd @@ -315,7 +315,7 @@ enPlot <- enrichmentSummary |> labs( x = "DA method", y = "Number of DA taxa" ) + - theme_minimal() + + # theme_minimal() + theme( axis.text.x = element_text(angle = 45, hjust = 1), legend.position = "bottom" @@ -389,7 +389,7 @@ posPlot <- positives |> scale_shape(name = "Normalization") + scale_linetype(name = "Normalization") + scale_color_manual(values = vec, name = "Base method") + - theme_minimal() + + # theme_minimal() + theme(legend.position = "bottom") ``` diff --git a/vignettes/articles/Ravel_2011_16S_BV.Rmd b/vignettes/articles/Ravel_2011_16S_BV.Rmd index ee57ba4..284e59f 100644 --- a/vignettes/articles/Ravel_2011_16S_BV.Rmd +++ b/vignettes/articles/Ravel_2011_16S_BV.Rmd @@ -299,7 +299,7 @@ enPlot <- enrichmentSummary |> labs( x = "DA method", y = "Number of DA taxa" ) + - theme_minimal() + + # theme_minimal() + theme( axis.text.x = element_text(angle = 45, hjust = 1), legend.position = "bottom" @@ -412,7 +412,7 @@ posPlot <- positives |> scale_shape(name = "Normalization") + scale_linetype(name = "Normalization") + scale_color_manual(values = vec, name = "Base method") + - theme_minimal() + + # theme_minimal() + theme(legend.position = "bottom") # plots <- plot_positives(positives) |> # map( ~ {