From dc3724f787ac87ba806f3c618d4cd47bc5c4422b Mon Sep 17 00:00:00 2001 From: ndimhypervol Date: Wed, 29 Nov 2017 08:53:59 +0900 Subject: [PATCH] changed version to add extra 0 --- DESCRIPTION | 2 +- NEWS.md | 2 +- R/wallace-package.R | 4 ++-- README.md | 2 +- inst/Rmd/text_intro.Rmd | 2 +- inst/Rmd/text_intro_tab.Rmd | 2 +- man/wallace-package.Rd | 4 ++-- vignettes/wallace-vignette.Rmd | 2 +- wallace.Rproj | 1 - 9 files changed, 10 insertions(+), 11 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 7ade2e9a..8be2c7f5 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: wallace -Version: 1.0 +Version: 1.0.0 Date: 2017-11-23 Title: A Modular Platform for Reproducible Modeling of Species Niches and Distributions Authors@R: c(person("Jamie M.", "Kass", email = "jkass@gradcenter.cuny.edu", role = c("aut", "cre")), diff --git a/NEWS.md b/NEWS.md index 84550471..b055b60c 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# wallace 1.0 +# wallace 1.0.0 - Biggest change: reprogrammed most of the software to integrate shiny modules. Now each module is a separate script in /inst/shiny/modules that contains both UI and server logic. This should make authorship and integration of new modules much easier. - Second biggest change: integrated leaflet draw toolbar functionality from leaflet.extras package, which replaces the previous code to draw and internally record polygons in comps 2 and 7. The code is much cleaner now and easier to make edits to. - By popular demand, added user-input environmental variables module. This is a work in progress, so please report bugs to Issues on Github. diff --git a/R/wallace-package.R b/R/wallace-package.R index 76ba989e..cb040506 100644 --- a/R/wallace-package.R +++ b/R/wallace-package.R @@ -31,12 +31,12 @@ #' @details \tabular{ll}{ #' Package: \tab wallace\cr #' Type: \tab Package\cr -#' Version: \tab 1.0\cr +#' Version: \tab 1.0.0\cr #' Date: \tab 2017-11-23\cr #' License: \tab GNU 3.0\cr #' } #' -#' @references Kass J.M., Vilela B., Aeillo-Lammens M.E., Muscarella R., Merow C., and Anderson R.P. (2017) \emph{Wallace}: A modular platform for reproducible ecological modeling. Version 1.0. +#' @references Kass J.M., Vilela B., Aeillo-Lammens M.E., Muscarella R., Merow C., and Anderson R.P. (2017) \emph{Wallace}: A modular platform for reproducible ecological modeling. Version 1.0.0. #' @import shiny leaflet #' @importFrom magrittr "%>%" NULL diff --git a/README.md b/README.md index e001ad13..d2b8fbf1 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ [![Build Status](https://travis-ci.org/wallaceEcoMod/wallace.svg?branch=master)](https://travis-ci.org/wallaceEcoMod/wallace) [![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0) [![CRAN version](http://www.r-pkg.org/badges/version/wallace)](https://CRAN.R-project.org/package=wallace) [![downloads](http://cranlogs.r-pkg.org/badges/grand-total/wallace?color=orange)](http://cranlogs.r-pkg.org/badges/grand-total/wallace?color=orange) -# Wallace (v1.0) +# Wallace (v1.0.0) *Wallace* is a modular platform for reproducible modeling of species niches and distributions, written in R. The application guides users through a complete analysis, from the acquisition of data to visualizing model predictions on an interactive map, thus bundling complex workflows into a single, streamlined interface. diff --git a/inst/Rmd/text_intro.Rmd b/inst/Rmd/text_intro.Rmd index 1d3fdcc9..03986faa 100644 --- a/inst/Rmd/text_intro.Rmd +++ b/inst/Rmd/text_intro.Rmd @@ -5,7 +5,7 @@ output: html_document ### **What is *Wallace*?** -Welcome to *Wallace*, a flexible application for reproducible ecological modeling, built for community expansion. The current version of *Wallace* (ver. 1.0; website steps the user through a full niche/distribution modeling analysis, from data acquisition to visualizing results. +Welcome to *Wallace*, a flexible application for reproducible ecological modeling, built for community expansion. The current version of *Wallace* (ver. 1.0.0; website steps the user through a full niche/distribution modeling analysis, from data acquisition to visualizing results. The application is written in `R` with the web app development package `shiny`. Please find the stable version of *Wallace* on CRAN, and the development version on Github. diff --git a/inst/Rmd/text_intro_tab.Rmd b/inst/Rmd/text_intro_tab.Rmd index 1a07ad97..5d638acd 100644 --- a/inst/Rmd/text_intro_tab.Rmd +++ b/inst/Rmd/text_intro_tab.Rmd @@ -5,7 +5,7 @@ output: html_document #### WORKFLOW -*Wallace* (v1.0) currently includes the following components and modules: +*Wallace* (v1.0.0) currently includes the following components and modules: **1**: *Obtain Occurrence Data* -Query Database diff --git a/man/wallace-package.Rd b/man/wallace-package.Rd index fabec9e8..6ee83513 100644 --- a/man/wallace-package.Rd +++ b/man/wallace-package.Rd @@ -14,13 +14,13 @@ Please see the official website (\url{https://wallaceecomod.github.io/}) for mor \tabular{ll}{ Package: \tab wallace\cr Type: \tab Package\cr -Version: \tab 1.0\cr +Version: \tab 1.0.0\cr Date: \tab 2017-11-23\cr License: \tab GNU 3.0\cr } } \references{ -Kass J.M., Vilela B., Aeillo-Lammens M.E., Muscarella R., Merow C., and Anderson R.P. (2017) \emph{Wallace}: A modular platform for reproducible ecological modeling. Version 1.0. +Kass J.M., Vilela B., Aeillo-Lammens M.E., Muscarella R., Merow C., and Anderson R.P. (2017) \emph{Wallace}: A modular platform for reproducible ecological modeling. Version 1.0.0. } \author{ \strong{Jamie M. Kass}\cr diff --git a/vignettes/wallace-vignette.Rmd b/vignettes/wallace-vignette.Rmd index d43bb823..ff446178 100644 --- a/vignettes/wallace-vignette.Rmd +++ b/vignettes/wallace-vignette.Rmd @@ -20,7 +20,7 @@ knitr::opts_chunk$set(collapse=TRUE, message=FALSE, warning=FALSE, comment="#>") This vignette and any others in the `wallace` package will be updated regularly in accordance with ongoing development. This vignette was written for *Wallace* v. 0.6.4, so if you are using a more updated version, some things will be different. We plan to update this vignette soon, and add more in the near future. # Introduction -*Wallace* v1.0 is an `R`-based GUI application for modeling species niches and distributions, and evaluating the results. We will refer to these models as species distribution models (SDMs), and we will not explain them at length here: the purpose of this vignette is to show users how to use *Wallace*. As you read through, you will be pointed to some sources of detailed info within the application for reference. +*Wallace* v1.0.0 is an `R`-based GUI application for modeling species niches and distributions, and evaluating the results. We will refer to these models as species distribution models (SDMs), and we will not explain them at length here: the purpose of this vignette is to show users how to use *Wallace*. As you read through, you will be pointed to some sources of detailed info within the application for reference. *Wallace* has many qualities which we think make it a good example of next-generation scientific software: it's 1) open, 2) expandible, 3) flexible, 4) interactive, 5) instructive, and 6) reproducible. The application features an pannable/zoomable map and dynamic plots and tables. Data for the models can be download from online databases or uploaded by the user, and most results can be downloaded, including the option to save R code that can reproduce your analysis. For more details, including on SDMs, please see our publication here (will fill this in). diff --git a/wallace.Rproj b/wallace.Rproj index 9dbf13dc..b1ded457 100644 --- a/wallace.Rproj +++ b/wallace.Rproj @@ -15,4 +15,3 @@ LaTeX: pdfLaTeX BuildType: Package PackageUseDevtools: Yes PackageInstallArgs: --no-multiarch --with-keep.source -PackageCheckArgs: --as-cran