Warning messages about pandas ...

[DenisFilloux]

Hello Wouter,

For your information...

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dfilloux@clust-slurm-client2:~/work$ module load nanoplot/1.42.0

dfilloux@clust-slurm-client2:~/work$ cat test.fastq
@49cd4c40-7e45-445e-91ee-ab6fd618bd14 runid=bbd145f6ae38a53e73fbd91dfdec6502f3731ab5 sampleid=CaMV_PurVir read=18817 ch=82 start_time=2024-09-17T04:21:00Z [email protected] barcode=unclassified
TTATGTCTCATTACTTTTAACATTCGTCATATGTTCATTAAAG
+
()((++('%$$%$$$$%'&&&&&%$&$$$')(('%$%&%%%%
@6ddb0fa7-9fa9-4982-b551-0caf859b8282 runid=bbd145f6ae38a53e73fbd91dfdec6502f3731ab5 sampleid=CaMV_PurVir read=15149 ch=89 start_time=2024-09-17T04:11:28Z [email protected] barcode=unclassified
TCGCCGATTAGAAGCTGAGAAGTACCGCTAGGCGGGGCCGAATAGGGA
+
))))))(((+++,.1((((----++),)),))''+++/,)(''(-
@c0c916e4-30db-4b63-9582-8cefa174c4d5 runid=bbd145f6ae38a53e73fbd91dfdec6502f3731ab5 sampleid=CaMV_PurVir read=17418 ch=106 start_time=2024-09-17T04:07:46Z [email protected] barcode=unclassified
ATATGTACTTTACTTCGTTCGATTACATATGCTCTT
+
##$$%&$$$%'%&&%%''(&%%%&)-/2//+('''&
@9e23ef97-79e6-4509-8017-008bf4e98380 runid=bbd145f6ae38a53e73fbd91dfdec6502f3731ab5 sampleid=CaMV_PurVir read=38011 ch=38 start_time=2024-09-17T04:09:28Z [email protected] barcode=unclassified
CTACAACTTTTCTTTTTCACCTTTTGCATGTAGAGGGTGTATT
+
%&&%&''(((''+)))))-32254320001455565563211
@d5bbedce-a5c6-462e-b57b-58eee34f0633 runid=bbd145f6ae38a53e73fbd91dfdec6502f3731ab5 sampleid=CaMV_PurVir read=18814 ch=108 start_time=2024-09-17T04:24:02Z [email protected] barcode=unclassified
ACAAGAAAGAGTTCTTAACTCTAAAGATAAAGATCTTCAAGATCAAAACTAAGCGATA
+
))'&&&--03334432111356876545568:9987--88867789<<:5'&&&('%

dfilloux@clust-slurm-client2:~/work$ NanoPlot --fastq_rich test.fastq -o Test
/shared/ifbstor1/software/miniconda/envs/nanoplot-1.42.0/lib/python3.10/site-packages/nanoplotter/spatial_heatmap.py:76: FutureWarning:

pandas.value_counts is deprecated and will be removed in a future version. Use pd.Series(obj).value_counts() instead.

/shared/ifbstor1/software/miniconda/envs/nanoplot-1.42.0/lib/python3.10/site-packages/nanoplotter/timeplots.py:257: FutureWarning:

'T' is deprecated and will be removed in a future version, please use 'min' instead.

/shared/ifbstor1/software/miniconda/envs/nanoplot-1.42.0/lib/python3.10/site-packages/nanoplotter/timeplots.py:277: FutureWarning:

'T' is deprecated and will be removed in a future version, please use 'min' instead.

/shared/ifbstor1/software/miniconda/envs/nanoplot-1.42.0/lib/python3.10/site-packages/nanoplotter/timeplots.py:208: FutureWarning:

'T' is deprecated and will be removed in a future version, please use 'min' instead.

/shared/ifbstor1/software/miniconda/envs/nanoplot-1.42.0/lib/python3.10/site-packages/nanoplotter/timeplots.py:231: FutureWarning:

'T' is deprecated and will be removed in a future version, please use 'min' instead.

[wdecoster]

Thank you! I will look into those warnings :-)