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Maybe ZMotif.py script is required #1

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zoomlion opened this issue Jun 19, 2023 · 0 comments
Open

Maybe ZMotif.py script is required #1

zoomlion opened this issue Jun 19, 2023 · 0 comments

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@zoomlion
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Hi, the developer of ZMotif,

I'm now trying to use ZMotif to help recognizing motif from chip-seq results. But I met some trouble in get-TFBS.sh in ZENODO supplementary materials, which invokes python3 zmotif.py.

Is it possible to share zmotif.py script to help utilizing this method, which will really help us a lot in dealing with new motif recognition.

singularity exec /home/andrewsg/bin/zmotif.simg python3 zmotif.py -pos_fasta $tf.pos.fasta -chrom_sizes /home/andrewsg/genome/hg38/hg38.chrom.sizes -g /home/andrewsg/genome/hg38/hg38.fa -motif_db $tf.meme -o $tf -n 1 -w 24 -e 100 -b 32 --seed_motif $tf.meme -flank 5000 from get-TFBS.sh

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