TCMADiT.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 63,
   "id": "268be3fd",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "TXT文件已成功保存为CSV文件。\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "C:\\Users\\DELL\\AppData\\Local\\Temp\\ipykernel_10220\\2686689840.py:9: DtypeWarning: Columns (3,18,36,54,79,100,128,131,137,141,152,176,182,189,191,193,205,215,216,217,218,219,221,223,227,228,229,231,232,233,247,248,249,285,286,287,288,289,290,291,292,295,297,298,299,300,302,305,306,307,308,309,310,311,312,313,314,315,316,317,318,320,323,324,325,326,327,328,329,330,331,332,333,334,335,336,337,339,340,341,342,343,344,345,346,347,349,350,351) have mixed types. Specify dtype option on import or set low_memory=False.\n",
      "  df = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\metadata.WXS.solid.file.txt', delimiter='\\t')\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "TXT文件已成功保存为CSV文件。\n",
      "包含空值的行已删除，并保存到新的CSV文件。\n"
     ]
    },
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      ]
     },
     "execution_count": 63,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "import pandas as pd\n",
    "\n",
    "# 读取txt文件，假设逗号分隔\n",
    "df = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\bacteria.WXS.solid.file.reads.txt', delimiter='\\t')\n",
    "df.to_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\bacteria.WXS.solid.file.reads.csv', index=False)\n",
    "print(\"TXT文件已成功保存为CSV文件。\")\n",
    "\n",
    "# 读取txt文件，假设逗号分隔\n",
    "df = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\metadata.WXS.solid.file.txt', delimiter='\\t')\n",
    "df.to_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\metadata.WXS.solid.file.csv', index=False)\n",
    "print(\"TXT文件已成功保存为CSV文件。\")\n",
    "\n",
    "# 读取CSV文件，并将空字符串识别为缺失值（NaN）\n",
    "df = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\bacteria.WXS.solid.file.reads.csv', na_values=[''])\n",
    "# 删除包含缺失值的行\n",
    "df_cleaned = df.dropna()\n",
    "# 保存清理后的数据到一个新的CSV文件\n",
    "df_cleaned.to_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\csvcleaned_file.csv', index=False)\n",
    "print(\"包含空值的行已删除，并保存到新的CSV文件。\")\n",
    "\n",
    "wxs_solid = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\csvcleaned_file.csv')\n",
    "wxs_solid"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "7f3fbfb1",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "ed821e8c",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 64,
   "id": "ac87f7b3",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "TXT文件已成功保存为CSV文件。\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "C:\\Users\\DELL\\AppData\\Local\\Temp\\ipykernel_10220\\132767167.py:10: DtypeWarning: Columns (3,18,36,54,79,100,128,131,137,141,152,176,182,189,191,193,205,215,216,217,218,219,221,223,227,228,229,231,232,233,247,248,249,285,286,287,288,289,290,291,292,295,297,298,299,300,302,305,306,307,308,309,310,311,312,313,314,315,316,317,318,320,323,324,325,326,327,328,329,330,331,332,333,334,335,336,337,339,340,341,342,343,344,345,346,347,349,350,351) have mixed types. Specify dtype option on import or set low_memory=False.\n",
      "  df = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\blood\\\\metadata.WXS.blood.file.txt', delimiter='\\t')\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "TXT文件已成功保存为CSV文件。\n",
      "包含空值的行已删除，并保存到新的CSV文件。\n"
     ]
    },
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       "[106 rows x 1595 columns]"
      ]
     },
     "execution_count": 64,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "import pandas as pd\n",
    "\n",
    "# 读取txt文件，假设逗号分隔\n",
    "df = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\blood\\\\bacteria.WXS.blood.file.reads.txt', delimiter='\\t')\n",
    "# 保存为csv文件\n",
    "df.to_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\blood\\\\bacteria.WXS.blood.file.reads.csv', index=False)\n",
    "print(\"TXT文件已成功保存为CSV文件。\")\n",
    "\n",
    "# 读取txt文件，假设逗号分隔\n",
    "df = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\blood\\\\metadata.WXS.blood.file.txt', delimiter='\\t')\n",
    "# 保存为csv文件\n",
    "df.to_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\blood\\\\metadata.WXS.blood.file.csv', index=False)\n",
    "print(\"TXT文件已成功保存为CSV文件。\")\n",
    "\n",
    "# 读取CSV文件，并将空字符串识别为缺失值（NaN）\n",
    "df = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\blood\\\\bacteria.WXS.blood.file.reads.csv', na_values=[''])\n",
    "# 删除包含缺失值的行\n",
    "df_cleaned = df.dropna()\n",
    "# 保存清理后的数据到一个新的CSV文件\n",
    "df_cleaned.to_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\blood\\\\csvcleaned_file.csv', index=False)\n",
    "print(\"包含空值的行已删除，并保存到新的CSV文件。\")\n",
    "\n",
    "wxs_blood = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\blood\\\\csvcleaned_file.csv')\n",
    "wxs_blood"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 65,
   "id": "7362c351",
   "metadata": {},
   "outputs": [],
   "source": [
    "wxs_solid_samples = wxs_solid.columns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 66,
   "id": "1eb862ac",
   "metadata": {},
   "outputs": [],
   "source": [
    "wxs_blood_samples = wxs_blood.columns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 67,
   "id": "37812fde",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "C:\\Users\\DELL\\AppData\\Local\\Temp\\ipykernel_10220\\597736544.py:1: DtypeWarning: Columns (3,18,36,54,79,100,128,131,137,141,152,176,182,189,191,193,205,215,216,217,218,219,221,223,227,228,229,231,232,233,247,248,249,285,286,287,288,289,290,291,292,295,297,298,299,300,302,305,306,307,308,309,310,311,312,313,314,315,316,317,318,320,323,324,325,326,327,328,329,330,331,332,333,334,335,336,337,339,340,341,342,343,344,345,346,347,349,350,351) have mixed types. Specify dtype option on import or set low_memory=False.\n",
      "  wxs_solid_meta = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\metadata.WXS.solid.file.csv')\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "2108"
      ]
     },
     "execution_count": 67,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "wxs_solid_meta = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\metadata.WXS.solid.file.csv')\n",
    "wxs_solid_file_id = wxs_solid_meta['file_id']    \n",
    "wxs_solid_barcode = wxs_solid_meta['case.bcr_patient_barcode']\n",
    "wxs_solid_sample_id = []\n",
    "index = 0\n",
    "for i in range (len(wxs_solid_samples)):\n",
    "    k = 0\n",
    "    for j in range (len(wxs_solid_file_id)):\n",
    "        if wxs_solid_samples[i] == wxs_solid_file_id[j]:\n",
    "            index = j\n",
    "            k = 1\n",
    "    if k == 1:\n",
    "        wxs_solid_sample_id.append(wxs_solid_barcode[index])\n",
    "len(wxs_solid_sample_id)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 68,
   "id": "19c5b6c2",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "C:\\Users\\DELL\\AppData\\Local\\Temp\\ipykernel_10220\\781542275.py:1: DtypeWarning: Columns (3,18,36,54,79,100,128,131,137,141,152,176,182,189,191,193,205,215,216,217,218,219,221,223,227,228,229,231,232,233,247,248,249,285,286,287,288,289,290,291,292,295,297,298,299,300,302,305,306,307,308,309,310,311,312,313,314,315,316,317,318,320,323,324,325,326,327,328,329,330,331,332,333,334,335,336,337,339,340,341,342,343,344,345,346,347,349,350,351) have mixed types. Specify dtype option on import or set low_memory=False.\n",
      "  wxs_blood_meta = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\blood\\\\metadata.WXS.blood.file.csv')\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "1594"
      ]
     },
     "execution_count": 68,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "wxs_blood_meta = pd.read_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\blood\\\\metadata.WXS.blood.file.csv')\n",
    "wxs_blood_file_id = wxs_blood_meta['file_id']    \n",
    "wxs_blood_barcode = wxs_blood_meta['case.bcr_patient_barcode']\n",
    "wxs_blood_sample_id = []\n",
    "index = 0\n",
    "for i in range (len(wxs_blood_samples)):\n",
    "    k = 0\n",
    "    for j in range (len(wxs_blood_file_id)):\n",
    "        if wxs_blood_samples[i] == wxs_blood_file_id[j]:\n",
    "            index = j\n",
    "            k = 1\n",
    "    if k == 1:\n",
    "        wxs_blood_sample_id.append(wxs_blood_barcode[index])\n",
    "len(wxs_blood_sample_id)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 73,
   "id": "c25ae5fc",
   "metadata": {},
   "outputs": [
    {
     "data": {
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       " 'TCGA-CQ-A4C6',\n",
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       " 'TCGA-CQ-A4C9',\n",
       " 'TCGA-CV-6943',\n",
       " 'TCGA-CV-A45X',\n",
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       " 'TCGA-CR-7371',\n",
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       " 'TCGA-CV-7437',\n",
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       " 'TCGA-QK-A8Z7',\n",
       " 'TCGA-CV-A463',\n",
       " 'TCGA-CV-7568',\n",
       " 'TCGA-CN-4737',\n",
       " 'TCGA-CV-7183',\n",
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       " 'TCGA-CV-6933',\n",
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       " 'TCGA-CV-5434',\n",
       " 'TCGA-CQ-6219',\n",
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       " 'TCGA-IQ-A61H',\n",
       " 'TCGA-CV-5435',\n",
       " 'TCGA-CN-A63Y',\n",
       " 'TCGA-CN-A641',\n",
       " 'TCGA-MZ-A7D7',\n",
       " 'TCGA-TN-A7HI',\n",
       " 'TCGA-QK-A6IJ',\n",
       " 'TCGA-CV-5443',\n",
       " 'TCGA-CX-7085',\n",
       " 'TCGA-CV-A6K0',\n",
       " 'TCGA-IQ-A61G',\n",
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       " 'TCGA-HD-7831',\n",
       " 'TCGA-CV-5977',\n",
       " 'TCGA-CV-5432',\n",
       " 'TCGA-CV-A45U',\n",
       " 'TCGA-CX-7086',\n",
       " 'TCGA-CV-5441',\n",
       " 'TCGA-CR-6487',\n",
       " 'TCGA-CN-5356',\n",
       " 'TCGA-CV-7091',\n",
       " 'TCGA-D6-A6EK',\n",
       " 'TCGA-CV-6939',\n",
       " 'TCGA-CN-5370',\n",
       " 'TCGA-CN-6013',\n",
       " 'TCGA-CR-6493',\n",
       " 'TCGA-CR-7382',\n",
       " 'TCGA-BA-A4IH',\n",
       " 'TCGA-T2-A6WX',\n",
       " 'TCGA-DQ-7596',\n",
       " 'TCGA-F7-A50I',\n",
       " 'TCGA-P3-A6SX',\n",
       " 'TCGA-CV-7178',\n",
       " 'TCGA-CV-6952',\n",
       " 'TCGA-CV-7435',\n",
       " 'TCGA-CR-7379',\n",
       " 'TCGA-D6-6826',\n",
       " 'TCGA-CN-6018',\n",
       " 'TCGA-T3-A92M',\n",
       " 'TCGA-CV-5976',\n",
       " 'TCGA-CV-6441',\n",
       " 'TCGA-HD-A4C1',\n",
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       " 'TCGA-CQ-6220',\n",
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       " 'TCGA-F7-A624',\n",
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       " 'TCGA-CR-6474',\n",
       " 'TCGA-UF-A71E',\n",
       " 'TCGA-CV-7423',\n",
       " 'TCGA-CQ-5325',\n",
       " 'TCGA-CV-7183',\n",
       " 'TCGA-BB-4224',\n",
       " 'TCGA-CN-5369',\n",
       " 'TCGA-CV-7261',\n",
       " 'TCGA-CV-6951',\n",
       " 'TCGA-BB-A6UO',\n",
       " 'TCGA-CV-7250',\n",
       " 'TCGA-BA-A4II',\n",
       " 'TCGA-CV-A461',\n",
       " 'TCGA-F7-A61V',\n",
       " 'TCGA-CV-7243',\n",
       " 'TCGA-CN-4733',\n",
       " 'TCGA-MT-A7BN',\n",
       " 'TCGA-CV-7101',\n",
       " 'TCGA-CV-A45W',\n",
       " 'TCGA-T2-A6WZ',\n",
       " 'TCGA-CV-5978',\n",
       " 'TCGA-CV-7236',\n",
       " 'TCGA-CN-5360',\n",
       " 'TCGA-CR-6492',\n",
       " 'TCGA-CQ-6225',\n",
       " 'TCGA-BA-5559',\n",
       " 'TCGA-P3-A5Q6',\n",
       " 'TCGA-HD-8224',\n",
       " 'TCGA-QK-A6V9',\n",
       " 'TCGA-CV-7434',\n",
       " 'TCGA-CV-A460',\n",
       " 'TCGA-CV-7238',\n",
       " 'TCGA-CQ-6224',\n",
       " 'TCGA-CV-A6JU',\n",
       " 'TCGA-CN-4736',\n",
       " 'TCGA-CV-7263',\n",
       " 'TCGA-CQ-A4C7',\n",
       " 'TCGA-CR-7401',\n",
       " 'TCGA-CV-6441',\n",
       " 'TCGA-P3-A6T5',\n",
       " 'TCGA-CN-6019',\n",
       " 'TCGA-CV-5436',\n",
       " 'TCGA-CN-4741',\n",
       " 'TCGA-MT-A67F',\n",
       " 'TCGA-T2-A6X0',\n",
       " 'TCGA-CQ-6223',\n",
       " 'TCGA-CR-7372',\n",
       " 'TCGA-CV-A6K1',\n",
       " 'TCGA-CV-5973',\n",
       " 'TCGA-HD-8635',\n",
       " 'TCGA-CQ-A4CD',\n",
       " 'TCGA-CV-5440',\n",
       " 'TCGA-CV-6951',\n",
       " 'TCGA-CV-7424',\n",
       " 'TCGA-DQ-5630',\n",
       " 'TCGA-CV-7091',\n",
       " 'TCGA-BA-6873',\n",
       " 'TCGA-CV-6433',\n",
       " 'TCGA-BB-4223',\n",
       " 'TCGA-CV-7261',\n",
       " 'TCGA-H7-7774',\n",
       " 'TCGA-D6-A4Z9',\n",
       " 'TCGA-CN-6995',\n",
       " 'TCGA-D6-6515',\n",
       " 'TCGA-D6-8569',\n",
       " ...]"
      ]
     },
     "execution_count": 73,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "wxs_solid_sample_id"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 74,
   "id": "82e04465",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['TCGA-A6-2680',\n",
       " 'TCGA-D5-6926',\n",
       " 'TCGA-CK-6748',\n",
       " 'TCGA-G4-6295',\n",
       " 'TCGA-AA-A02H',\n",
       " 'TCGA-AA-3527',\n",
       " 'TCGA-DM-A282',\n",
       " 'TCGA-D5-6530',\n",
       " 'TCGA-CM-5864',\n",
       " 'TCGA-AA-A01K',\n",
       " 'TCGA-CM-5861',\n",
       " 'TCGA-AZ-4615',\n",
       " 'TCGA-AU-3779',\n",
       " 'TCGA-SS-A7HO',\n",
       " 'TCGA-CM-4748',\n",
       " 'TCGA-AA-3530',\n",
       " 'TCGA-AA-3819',\n",
       " 'TCGA-D5-6533',\n",
       " 'TCGA-QG-A5YX',\n",
       " 'TCGA-AZ-5403',\n",
       " 'TCGA-AA-A02R',\n",
       " 'TCGA-AA-A02Y',\n",
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       " 'TCGA-AA-3980',\n",
       " 'TCGA-DM-A28G',\n",
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       " 'TCGA-AA-3947',\n",
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       " 'TCGA-CQ-A4CA',\n",
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       " 'TCGA-CN-4727',\n",
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       " 'TCGA-HD-7831',\n",
       " 'TCGA-H7-7774',\n",
       " 'TCGA-QK-A8Z7',\n",
       " 'TCGA-CR-7399',\n",
       " 'TCGA-F7-A61V',\n",
       " 'TCGA-IQ-A61E',\n",
       " 'TCGA-CV-7418',\n",
       " 'TCGA-CN-6010',\n",
       " 'TCGA-CV-7178',\n",
       " 'TCGA-BA-A6DG',\n",
       " 'TCGA-IQ-7632',\n",
       " 'TCGA-CN-4734',\n",
       " 'TCGA-CV-7406',\n",
       " 'TCGA-CV-7100',\n",
       " 'TCGA-CR-7394',\n",
       " 'TCGA-CQ-5331',\n",
       " 'TCGA-QK-A8ZA',\n",
       " 'TCGA-BA-6871',\n",
       " 'TCGA-CV-6961',\n",
       " 'TCGA-CR-6491',\n",
       " 'TCGA-CV-7433',\n",
       " 'TCGA-BB-7870',\n",
       " 'TCGA-CV-6937',\n",
       " 'TCGA-MT-A67A',\n",
       " 'TCGA-UF-A7JD',\n",
       " 'TCGA-CV-7253',\n",
       " 'TCGA-CR-7385',\n",
       " 'TCGA-BA-4078',\n",
       " 'TCGA-CV-7416',\n",
       " 'TCGA-UP-A6WW',\n",
       " 'TCGA-CX-7219',\n",
       " 'TCGA-QK-A6II',\n",
       " 'TCGA-H7-8501',\n",
       " 'TCGA-CV-7435',\n",
       " 'TCGA-P3-A6T4',\n",
       " 'TCGA-BB-7861',\n",
       " 'TCGA-CV-6939',\n",
       " 'TCGA-CV-A45T',\n",
       " 'TCGA-CV-7090',\n",
       " 'TCGA-CR-6493',\n",
       " 'TCGA-HD-A4C1',\n",
       " 'TCGA-CN-6016',\n",
       " 'TCGA-P3-A6T7',\n",
       " 'TCGA-UF-A7JK',\n",
       " 'TCGA-D6-6516',\n",
       " 'TCGA-CQ-A4C9',\n",
       " 'TCGA-UF-A7JJ',\n",
       " 'TCGA-CV-7413',\n",
       " 'TCGA-BA-A6DD',\n",
       " 'TCGA-CX-7086',\n",
       " 'TCGA-CV-6936',\n",
       " 'TCGA-D6-8569',\n",
       " 'TCGA-BB-A6UO',\n",
       " 'TCGA-CN-5365',\n",
       " 'TCGA-CR-7402',\n",
       " 'TCGA-CN-4723',\n",
       " 'TCGA-P3-A6SX',\n",
       " 'TCGA-BA-A6DL',\n",
       " 'TCGA-CV-7409',\n",
       " 'TCGA-CR-7368',\n",
       " 'TCGA-BB-7864',\n",
       " 'TCGA-CN-4736',\n",
       " 'TCGA-BB-7862',\n",
       " 'TCGA-CV-7250',\n",
       " 'TCGA-BB-7872',\n",
       " 'TCGA-CQ-7071',\n",
       " 'TCGA-MZ-A5BI',\n",
       " 'TCGA-CN-6024',\n",
       " 'TCGA-DQ-5625',\n",
       " 'TCGA-CV-5966',\n",
       " 'TCGA-BB-A5HY',\n",
       " 'TCGA-F7-A50G',\n",
       " 'TCGA-CR-5250',\n",
       " 'TCGA-CR-6492',\n",
       " 'TCGA-CV-7089',\n",
       " 'TCGA-HD-A634',\n",
       " 'TCGA-CV-6935',\n",
       " 'TCGA-CV-7568',\n",
       " 'TCGA-CR-7383',\n",
       " 'TCGA-UF-A7JC',\n",
       " 'TCGA-T2-A6X2',\n",
       " 'TCGA-CV-7103',\n",
       " 'TCGA-MT-A67D',\n",
       " 'TCGA-CR-7404',\n",
       " 'TCGA-CN-5360',\n",
       " 'TCGA-CV-6951',\n",
       " 'TCGA-CX-A4AQ',\n",
       " 'TCGA-4P-AA8J',\n",
       " 'TCGA-CQ-7064',\n",
       " 'TCGA-DQ-7592',\n",
       " 'TCGA-CN-A6UY',\n",
       " 'TCGA-P3-A5QF',\n",
       " 'TCGA-BA-A4IH',\n",
       " 'TCGA-CN-5358',\n",
       " 'TCGA-HD-8634',\n",
       " 'TCGA-CQ-6225',\n",
       " 'TCGA-CV-5432',\n",
       " 'TCGA-CV-7095',\n",
       " 'TCGA-CR-5248',\n",
       " 'TCGA-CN-6996',\n",
       " 'TCGA-CR-7379',\n",
       " 'TCGA-HD-8635',\n",
       " 'TCGA-CN-4728',\n",
       " 'TCGA-IQ-A61J',\n",
       " 'TCGA-CN-A6V6',\n",
       " 'TCGA-CV-A45W',\n",
       " 'TCGA-BA-5152',\n",
       " 'TCGA-CR-7373',\n",
       " 'TCGA-CV-6942',\n",
       " 'TCGA-CR-5247',\n",
       " 'TCGA-D6-A6EO',\n",
       " 'TCGA-CN-A63W',\n",
       " 'TCGA-CN-6995',\n",
       " 'TCGA-CR-6470',\n",
       " 'TCGA-CN-6989',\n",
       " 'TCGA-DQ-7588',\n",
       " 'TCGA-HL-7533',\n",
       " 'TCGA-CR-6488',\n",
       " 'TCGA-D6-A6EK',\n",
       " 'TCGA-CQ-A4C6',\n",
       " 'TCGA-CN-4741',\n",
       " 'TCGA-CV-7248',\n",
       " 'TCGA-CR-7372',\n",
       " 'TCGA-CQ-7067',\n",
       " 'TCGA-KU-A6H8',\n",
       " 'TCGA-CQ-5330',\n",
       " 'TCGA-DQ-7593',\n",
       " 'TCGA-CR-6487',\n",
       " 'TCGA-CV-6953',\n",
       " 'TCGA-CQ-5323',\n",
       " 'TCGA-CV-7415',\n",
       " 'TCGA-CR-7374',\n",
       " 'TCGA-BA-A4IF',\n",
       " 'TCGA-D6-6823',\n",
       " 'TCGA-CV-7252',\n",
       " 'TCGA-CN-6998',\n",
       " 'TCGA-CV-5435',\n",
       " 'TCGA-T3-A92M',\n",
       " 'TCGA-CR-7386',\n",
       " 'TCGA-DQ-5629',\n",
       " 'TCGA-T3-A92N',\n",
       " 'TCGA-DQ-7594',\n",
       " 'TCGA-CR-6474',\n",
       " 'TCGA-F7-A50J',\n",
       " 'TCGA-CR-6471',\n",
       " 'TCGA-BA-6870',\n",
       " 'TCGA-CQ-6228',\n",
       " 'TCGA-DQ-7596',\n",
       " 'TCGA-CV-5430',\n",
       " 'TCGA-CN-A499',\n",
       " 'TCGA-D6-A6EP',\n",
       " 'TCGA-CN-6023',\n",
       " 'TCGA-BA-5149',\n",
       " 'TCGA-MT-A51X',\n",
       " 'TCGA-CV-A468',\n",
       " 'TCGA-IQ-A61H',\n",
       " 'TCGA-CQ-5334',\n",
       " 'TCGA-C9-A47Z',\n",
       " 'TCGA-CQ-6227',\n",
       " 'TCGA-HD-8224',\n",
       " 'TCGA-BA-4074',\n",
       " 'TCGA-UF-A7J9',\n",
       " 'TCGA-CV-7235',\n",
       " 'TCGA-CN-6012',\n",
       " 'TCGA-CV-7245',\n",
       " 'TCGA-CV-7425',\n",
       " 'TCGA-QK-A6IG',\n",
       " 'TCGA-CQ-7065',\n",
       " 'TCGA-RS-A6TP',\n",
       " 'TCGA-HD-7753',\n",
       " 'TCGA-IQ-A61O',\n",
       " 'TCGA-CV-5434',\n",
       " 'TCGA-CR-7389',\n",
       " 'TCGA-T2-A6WZ',\n",
       " 'TCGA-BA-A6DE',\n",
       " 'TCGA-CV-A45Y',\n",
       " 'TCGA-BA-A6DF',\n",
       " 'TCGA-MZ-A6I9',\n",
       " 'TCGA-D6-A4Z9',\n",
       " 'TCGA-D6-6515',\n",
       " 'TCGA-CV-7247',\n",
       " 'TCGA-CR-6477',\n",
       " 'TCGA-BB-7871',\n",
       " 'TCGA-CV-6941',\n",
       " 'TCGA-TN-A7HJ',\n",
       " 'TCGA-P3-A6T6',\n",
       " 'TCGA-CR-7370',\n",
       " 'TCGA-F7-A624',\n",
       " 'TCGA-BA-5151',\n",
       " 'TCGA-CR-6473',\n",
       " 'TCGA-CN-A63T',\n",
       " 'TCGA-HD-A6I0',\n",
       " 'TCGA-CV-A45P',\n",
       " 'TCGA-KU-A66T',\n",
       " 'TCGA-CV-6962',\n",
       " 'TCGA-BA-6872',\n",
       " 'TCGA-CV-A6JY',\n",
       " 'TCGA-UF-A718',\n",
       " 'TCGA-CR-5249',\n",
       " 'TCGA-DQ-7589',\n",
       " 'TCGA-CV-A45X',\n",
       " 'TCGA-CN-4729',\n",
       " 'TCGA-CR-7397',\n",
       " 'TCGA-H7-A76A',\n",
       " 'TCGA-CV-A6JN',\n",
       " 'TCGA-P3-A5QE',\n",
       " 'TCGA-CV-7255',\n",
       " 'TCGA-UF-A71A',\n",
       " 'TCGA-CV-7434',\n",
       " 'TCGA-HD-7832',\n",
       " 'TCGA-BA-5559',\n",
       " 'TCGA-BA-A8YP',\n",
       " 'TCGA-C9-A480',\n",
       " 'TCGA-BA-5557',\n",
       " 'TCGA-CN-A49A',\n",
       " 'TCGA-CQ-6223',\n",
       " 'TCGA-RS-A6TO',\n",
       " 'TCGA-CV-A6JU',\n",
       " 'TCGA-CR-7377',\n",
       " 'TCGA-BB-4224',\n",
       " 'TCGA-CV-7414',\n",
       " 'TCGA-UF-A7JT',\n",
       " 'TCGA-D6-6825',\n",
       " 'TCGA-CV-5970',\n",
       " 'TCGA-BB-8596',\n",
       " 'TCGA-WA-A7GZ',\n",
       " 'TCGA-CR-6480',\n",
       " 'TCGA-UF-A7JF',\n",
       " 'TCGA-CN-5364',\n",
       " 'TCGA-CV-7102',\n",
       " 'TCGA-CV-7427',\n",
       " 'TCGA-CV-5436',\n",
       " 'TCGA-CR-6481',\n",
       " 'TCGA-QK-A64Z',\n",
       " 'TCGA-F7-7848',\n",
       " 'TCGA-IQ-A6SH',\n",
       " 'TCGA-CV-A6K0',\n",
       " 'TCGA-T2-A6WX',\n",
       " 'TCGA-P3-A6T8',\n",
       " 'TCGA-CV-7432',\n",
       " 'TCGA-QK-A8ZB',\n",
       " 'TCGA-QK-A8Z9',\n",
       " 'TCGA-CN-6021',\n",
       " 'TCGA-CN-5370',\n",
       " 'TCGA-BB-7866',\n",
       " 'TCGA-F7-A620',\n",
       " 'TCGA-QK-A6VC',\n",
       " 'TCGA-CV-6950',\n",
       " 'TCGA-P3-A5Q6',\n",
       " 'TCGA-F7-8298',\n",
       " 'TCGA-D6-A74Q',\n",
       " 'TCGA-CR-7365',\n",
       " 'TCGA-HD-8314',\n",
       " 'TCGA-CV-7238',\n",
       " 'TCGA-P3-A6T5',\n",
       " 'TCGA-CN-4738',\n",
       " 'TCGA-BA-5556',\n",
       " 'TCGA-QK-A6IF',\n",
       " 'TCGA-CR-7395',\n",
       " 'TCGA-CQ-A4CD',\n",
       " 'TCGA-CR-7369',\n",
       " 'TCGA-CN-4737',\n",
       " 'TCGA-DQ-7591',\n",
       " 'TCGA-IQ-A61G',\n",
       " 'TCGA-CX-7082',\n",
       " 'TCGA-CV-7422',\n",
       " 'TCGA-CQ-6222',\n",
       " 'TCGA-QK-A6VB',\n",
       " 'TCGA-CV-A6JE',\n",
       " 'TCGA-CV-6955',\n",
       " 'TCGA-CV-7438',\n",
       " 'TCGA-CR-7393',\n",
       " 'TCGA-F7-A623',\n",
       " 'TCGA-CR-7390',\n",
       " 'TCGA-HD-7754',\n",
       " 'TCGA-CV-7183',\n",
       " 'TCGA-CV-7243',\n",
       " 'TCGA-CN-4733',\n",
       " 'TCGA-CV-7236',\n",
       " 'TCGA-CN-4735',\n",
       " 'TCGA-CV-7180',\n",
       " 'TCGA-CN-A6V7',\n",
       " 'TCGA-BB-A6UM',\n",
       " ...]"
      ]
     },
     "execution_count": 74,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "wxs_blood_sample_id"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 75,
   "id": "8c19798e",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "0 60 TCGA-CK-4952 TCGA-CK-4952\n",
      "2 69 TCGA-A6-5656 TCGA-A6-5656\n",
      "2 229 TCGA-A6-5656 TCGA-A6-5656\n",
      "3 330 TCGA-AZ-4315 TCGA-AZ-4315\n",
      "4 65 TCGA-T9-A92H TCGA-T9-A92H\n",
      "5 66 TCGA-A6-5661 TCGA-A6-5661\n",
      "6 114 TCGA-AZ-4684 TCGA-AZ-4684\n",
      "7 88 TCGA-AA-3811 TCGA-AA-3811\n",
      "8 23 TCGA-AA-3980 TCGA-AA-3980\n",
      "9 312 TCGA-F4-6569 TCGA-F4-6569\n",
      "11 336 TCGA-AA-3558 TCGA-AA-3558\n",
      "12 268 TCGA-AA-3966 TCGA-AA-3966\n",
      "13 289 TCGA-CM-6168 TCGA-CM-6168\n",
      "14 14 TCGA-CM-4748 TCGA-CM-4748\n",
      "15 353 TCGA-F4-6854 TCGA-F4-6854\n",
      "16 172 TCGA-AA-3667 TCGA-AA-3667\n",
      "17 86 TCGA-G4-6320 TCGA-G4-6320\n",
      "18 218 TCGA-F4-6855 TCGA-F4-6855\n",
      "19 296 TCGA-D5-6540 TCGA-D5-6540\n",
      "20 240 TCGA-5M-AATE TCGA-5M-AATE\n",
      "22 47 TCGA-G4-6323 TCGA-G4-6323\n",
      "23 251 TCGA-QG-A5Z1 TCGA-QG-A5Z1\n",
      "24 235 TCGA-AA-3673 TCGA-AA-3673\n",
      "25 369 TCGA-A6-2681 TCGA-A6-2681\n",
      "26 68 TCGA-AZ-4681 TCGA-AZ-4681\n",
      "27 155 TCGA-NH-A6GC TCGA-NH-A6GC\n",
      "28 170 TCGA-AA-3976 TCGA-AA-3976\n",
      "29 193 TCGA-AA-A01I TCGA-AA-A01I\n",
      "30 11 TCGA-AZ-4615 TCGA-AZ-4615\n",
      "30 128 TCGA-AZ-4615 TCGA-AZ-4615\n",
      "31 80 TCGA-F4-6459 TCGA-F4-6459\n",
      "32 308 TCGA-A6-3810 TCGA-A6-3810\n",
      "32 310 TCGA-A6-3810 TCGA-A6-3810\n",
      "33 181 TCGA-AA-3517 TCGA-AA-3517\n",
      "34 90 TCGA-AY-6386 TCGA-AY-6386\n",
      "35 363 TCGA-G4-6310 TCGA-G4-6310\n",
      "36 231 TCGA-AA-3842 TCGA-AA-3842\n",
      "37 276 TCGA-AA-3534 TCGA-AA-3534\n",
      "38 316 TCGA-CM-4752 TCGA-CM-4752\n",
      "39 185 TCGA-AA-3815 TCGA-AA-3815\n",
      "40 349 TCGA-NH-A8F7 TCGA-NH-A8F7\n",
      "41 163 TCGA-AA-3710 TCGA-AA-3710\n",
      "41 279 TCGA-AA-3710 TCGA-AA-3710\n",
      "42 141 TCGA-AA-A01D TCGA-AA-A01D\n",
      "43 75 TCGA-AA-3529 TCGA-AA-3529\n",
      "44 118 TCGA-AA-A017 TCGA-AA-A017\n",
      "45 102 TCGA-AA-3548 TCGA-AA-3548\n",
      "46 61 TCGA-AA-3982 TCGA-AA-3982\n",
      "48 30 TCGA-AA-3984 TCGA-AA-3984\n",
      "48 402 TCGA-AA-3984 TCGA-AA-3984\n",
      "50 277 TCGA-AM-5820 TCGA-AM-5820\n",
      "51 384 TCGA-G4-6307 TCGA-G4-6307\n",
      "52 228 TCGA-A6-A567 TCGA-A6-A567\n",
      "54 178 TCGA-AZ-4323 TCGA-AZ-4323\n",
      "55 32 TCGA-AA-3821 TCGA-AA-3821\n",
      "56 24 TCGA-DM-A28G TCGA-DM-A28G\n",
      "57 129 TCGA-G4-6322 TCGA-G4-6322\n",
      "58 38 TCGA-CK-4948 TCGA-CK-4948\n",
      "59 27 TCGA-AA-3947 TCGA-AA-3947\n",
      "59 305 TCGA-AA-3947 TCGA-AA-3947\n",
      "60 298 TCGA-G4-6588 TCGA-G4-6588\n",
      "61 77 TCGA-CM-4747 TCGA-CM-4747\n",
      "62 340 TCGA-AA-3956 TCGA-AA-3956\n",
      "64 370 TCGA-AA-3875 TCGA-AA-3875\n",
      "65 76 TCGA-F4-6461 TCGA-F4-6461\n",
      "67 294 TCGA-A6-3808 TCGA-A6-3808\n",
      "68 176 TCGA-AD-6548 TCGA-AD-6548\n",
      "69 375 TCGA-A6-6137 TCGA-A6-6137\n",
      "70 44 TCGA-A6-2677 TCGA-A6-2677\n",
      "71 290 TCGA-AA-3941 TCGA-AA-3941\n",
      "72 117 TCGA-CM-6676 TCGA-CM-6676\n",
      "73 276 TCGA-AA-3534 TCGA-AA-3534\n",
      "74 299 TCGA-AA-A02F TCGA-AA-A02F\n",
      "75 354 TCGA-AA-3814 TCGA-AA-3814\n",
      "76 194 TCGA-AA-A00N TCGA-AA-A00N\n",
      "76 196 TCGA-AA-A00N TCGA-AA-A00N\n",
      "77 151 TCGA-A6-2683 TCGA-A6-2683\n",
      "78 74 TCGA-AA-3869 TCGA-AA-3869\n",
      "79 275 TCGA-NH-A6GA TCGA-NH-A6GA\n",
      "81 333 TCGA-G4-6293 TCGA-G4-6293\n",
      "82 408 TCGA-CM-4751 TCGA-CM-4751\n",
      "83 286 TCGA-A6-5660 TCGA-A6-5660\n",
      "84 250 TCGA-A6-5665 TCGA-A6-5665\n",
      "85 300 TCGA-D5-7000 TCGA-D5-7000\n",
      "86 7 TCGA-D5-6530 TCGA-D5-6530\n",
      "87 335 TCGA-CA-6718 TCGA-CA-6718\n",
      "88 157 TCGA-A6-6138 TCGA-A6-6138\n",
      "89 198 TCGA-CA-5796 TCGA-CA-5796\n",
      "90 211 TCGA-D5-5541 TCGA-D5-5541\n",
      "91 179 TCGA-AY-A8YK TCGA-AY-A8YK\n",
      "92 199 TCGA-A6-6781 TCGA-A6-6781\n",
      "92 403 TCGA-A6-6781 TCGA-A6-6781\n",
      "93 282 TCGA-AA-3973 TCGA-AA-3973\n",
      "94 109 TCGA-G4-6321 TCGA-G4-6321\n",
      "96 199 TCGA-A6-6781 TCGA-A6-6781\n",
      "96 403 TCGA-A6-6781 TCGA-A6-6781\n",
      "97 174 TCGA-G4-6311 TCGA-G4-6311\n",
      "98 123 TCGA-CM-4746 TCGA-CM-4746\n",
      "100 236 TCGA-AA-3688 TCGA-AA-3688\n",
      "101 239 TCGA-AA-3549 TCGA-AA-3549\n",
      "103 154 TCGA-A6-6649 TCGA-A6-6649\n",
      "104 160 TCGA-G4-6586 TCGA-G4-6586\n",
      "105 334 TCGA-DM-A1D4 TCGA-DM-A1D4\n",
      "106 365 TCGA-AA-3532 TCGA-AA-3532\n",
      "107 190 TCGA-G4-6627 TCGA-G4-6627\n",
      "108 273 TCGA-A6-5664 TCGA-A6-5664\n",
      "109 263 TCGA-AA-3844 TCGA-AA-3844\n",
      "110 226 TCGA-AA-3833 TCGA-AA-3833\n",
      "110 257 TCGA-AA-3833 TCGA-AA-3833\n",
      "111 89 TCGA-G4-6298 TCGA-G4-6298\n",
      "112 96 TCGA-NH-A5IV TCGA-NH-A5IV\n",
      "113 87 TCGA-AA-3851 TCGA-AA-3851\n",
      "114 358 TCGA-AA-3864 TCGA-AA-3864\n",
      "115 311 TCGA-G4-6314 TCGA-G4-6314\n",
      "116 220 TCGA-D5-6920 TCGA-D5-6920\n",
      "117 12 TCGA-AU-3779 TCGA-AU-3779\n",
      "118 138 TCGA-D5-6922 TCGA-D5-6922\n",
      "119 302 TCGA-AD-6965 TCGA-AD-6965\n",
      "120 314 TCGA-A6-5667 TCGA-A6-5667\n",
      "121 232 TCGA-AD-6888 TCGA-AD-6888\n",
      "122 325 TCGA-G4-6626 TCGA-G4-6626\n",
      "123 321 TCGA-CM-6167 TCGA-CM-6167\n",
      "124 5 TCGA-AA-3527 TCGA-AA-3527\n",
      "125 212 TCGA-AD-6895 TCGA-AD-6895\n",
      "126 389 TCGA-AA-3519 TCGA-AA-3519\n",
      "127 29 TCGA-QL-A97D TCGA-QL-A97D\n",
      "128 15 TCGA-AA-3530 TCGA-AA-3530\n",
      "129 243 TCGA-CK-5912 TCGA-CK-5912\n",
      "130 405 TCGA-AA-3971 TCGA-AA-3971\n",
      "131 292 TCGA-F4-6856 TCGA-F4-6856\n",
      "132 164 TCGA-D5-6931 TCGA-D5-6931\n",
      "133 85 TCGA-F4-6807 TCGA-F4-6807\n",
      "134 116 TCGA-AA-3861 TCGA-AA-3861\n",
      "135 182 TCGA-G4-6297 TCGA-G4-6297\n",
      "136 158 TCGA-AA-3837 TCGA-AA-3837\n",
      "138 192 TCGA-DM-A28A TCGA-DM-A28A\n",
      "139 372 TCGA-AD-6964 TCGA-AD-6964\n",
      "140 187 TCGA-CM-4750 TCGA-CM-4750\n",
      "141 168 TCGA-CM-6679 TCGA-CM-6679\n",
      "142 33 TCGA-AA-3949 TCGA-AA-3949\n",
      "142 162 TCGA-AA-3949 TCGA-AA-3949\n",
      "143 142 TCGA-AA-3684 TCGA-AA-3684\n",
      "144 202 TCGA-A6-6780 TCGA-A6-6780\n",
      "144 259 TCGA-A6-6780 TCGA-A6-6780\n",
      "145 26 TCGA-CM-6674 TCGA-CM-6674\n",
      "146 246 TCGA-CM-5860 TCGA-CM-5860\n",
      "147 36 TCGA-AA-3526 TCGA-AA-3526\n",
      "149 129 TCGA-G4-6322 TCGA-G4-6322\n",
      "150 284 TCGA-A6-6652 TCGA-A6-6652\n",
      "151 16 TCGA-AA-3819 TCGA-AA-3819\n",
      "154 379 TCGA-AA-3855 TCGA-AA-3855\n",
      "155 267 TCGA-AA-3664 TCGA-AA-3664\n",
      "157 355 TCGA-D5-6924 TCGA-D5-6924\n",
      "158 365 TCGA-AA-3532 TCGA-AA-3532\n",
      "160 256 TCGA-G4-6304 TCGA-G4-6304\n",
      "161 323 TCGA-CK-4947 TCGA-CK-4947\n",
      "163 250 TCGA-A6-5665 TCGA-A6-5665\n",
      "165 250 TCGA-A6-5665 TCGA-A6-5665\n",
      "166 69 TCGA-A6-5656 TCGA-A6-5656\n",
      "166 229 TCGA-A6-5656 TCGA-A6-5656\n",
      "169 395 TCGA-AD-A5EJ TCGA-AD-A5EJ\n",
      "171 6 TCGA-DM-A282 TCGA-DM-A282\n",
      "172 133 TCGA-AA-3531 TCGA-AA-3531\n",
      "173 293 TCGA-A6-5662 TCGA-A6-5662\n",
      "174 63 TCGA-DM-A28C TCGA-DM-A28C\n",
      "175 148 TCGA-CA-6715 TCGA-CA-6715\n",
      "176 344 TCGA-AY-5543 TCGA-AY-5543\n",
      "178 140 TCGA-AA-A010 TCGA-AA-A010\n",
      "178 385 TCGA-AA-A010 TCGA-AA-A010\n",
      "179 62 TCGA-F4-6806 TCGA-F4-6806\n",
      "180 40 TCGA-AY-A71X TCGA-AY-A71X\n",
      "181 150 TCGA-AA-3856 TCGA-AA-3856\n",
      "182 380 TCGA-CM-4743 TCGA-CM-4743\n",
      "183 307 TCGA-CM-6163 TCGA-CM-6163\n",
      "184 391 TCGA-A6-5666 TCGA-A6-5666\n",
      "185 108 TCGA-A6-5659 TCGA-A6-5659\n",
      "185 398 TCGA-A6-5659 TCGA-A6-5659\n",
      "187 140 TCGA-AA-A010 TCGA-AA-A010\n",
      "187 385 TCGA-AA-A010 TCGA-AA-A010\n",
      "190 244 TCGA-AA-3538 TCGA-AA-3538\n",
      "191 97 TCGA-DM-A288 TCGA-DM-A288\n",
      "192 180 TCGA-DM-A0XD TCGA-DM-A0XD\n",
      "194 4 TCGA-AA-A02H TCGA-AA-A02H\n",
      "195 17 TCGA-D5-6533 TCGA-D5-6533\n",
      "196 107 TCGA-A6-2671 TCGA-A6-2671\n",
      "197 34 TCGA-A6-6650 TCGA-A6-6650\n",
      "197 113 TCGA-A6-6650 TCGA-A6-6650\n",
      "198 287 TCGA-NH-A50U TCGA-NH-A50U\n",
      "199 202 TCGA-A6-6780 TCGA-A6-6780\n",
      "199 259 TCGA-A6-6780 TCGA-A6-6780\n",
      "200 94 TCGA-AA-3818 TCGA-AA-3818\n",
      "201 119 TCGA-A6-2679 TCGA-A6-2679\n",
      "202 149 TCGA-NH-A8F8 TCGA-NH-A8F8\n",
      "204 108 TCGA-A6-5659 TCGA-A6-5659\n",
      "204 398 TCGA-A6-5659 TCGA-A6-5659\n",
      "206 368 TCGA-CA-6716 TCGA-CA-6716\n",
      "207 247 TCGA-G4-6317 TCGA-G4-6317\n",
      "208 342 TCGA-AA-3975 TCGA-AA-3975\n",
      "209 54 TCGA-AA-3930 TCGA-AA-3930\n",
      "210 59 TCGA-D5-6898 TCGA-D5-6898\n",
      "212 131 TCGA-CM-6164 TCGA-CM-6164\n",
      "214 161 TCGA-AA-A00Z TCGA-AA-A00Z\n",
      "215 261 TCGA-CK-6746 TCGA-CK-6746\n",
      "216 293 TCGA-A6-5662 TCGA-A6-5662\n",
      "217 234 TCGA-A6-2685 TCGA-A6-2685\n",
      "218 350 TCGA-CK-6747 TCGA-CK-6747\n",
      "219 119 TCGA-A6-2679 TCGA-A6-2679\n",
      "220 122 TCGA-AA-3524 TCGA-AA-3524\n",
      "221 345 TCGA-D5-6529 TCGA-D5-6529\n",
      "222 209 TCGA-AA-3681 TCGA-AA-3681\n",
      "223 322 TCGA-AA-A004 TCGA-AA-A004\n",
      "225 337 TCGA-AA-3678 TCGA-AA-3678\n",
      "226 391 TCGA-A6-5666 TCGA-A6-5666\n",
      "227 346 TCGA-AD-6899 TCGA-AD-6899\n",
      "228 233 TCGA-QG-A5Z2 TCGA-QG-A5Z2\n",
      "229 381 TCGA-AD-6963 TCGA-AD-6963\n",
      "230 352 TCGA-AA-3560 TCGA-AA-3560\n",
      "231 105 TCGA-NH-A6GB TCGA-NH-A6GB\n",
      "235 265 TCGA-AA-3672 TCGA-AA-3672\n",
      "236 106 TCGA-AZ-4308 TCGA-AZ-4308\n",
      "237 143 TCGA-AD-6901 TCGA-AD-6901\n",
      "239 203 TCGA-AA-3860 TCGA-AA-3860\n",
      "240 20 TCGA-AA-A02R TCGA-AA-A02R\n",
      "241 219 TCGA-DM-A28F TCGA-DM-A28F\n",
      "242 181 TCGA-AA-3517 TCGA-AA-3517\n",
      "243 188 TCGA-AM-5821 TCGA-AM-5821\n",
      "244 271 TCGA-F4-6463 TCGA-F4-6463\n",
      "246 304 TCGA-CM-6169 TCGA-CM-6169\n",
      "248 153 TCGA-A6-2684 TCGA-A6-2684\n",
      "248 392 TCGA-A6-2684 TCGA-A6-2684\n",
      "249 252 TCGA-5M-AAT4 TCGA-5M-AAT4\n",
      "250 329 TCGA-F4-6703 TCGA-F4-6703\n",
      "251 137 TCGA-A6-3809 TCGA-A6-3809\n",
      "251 309 TCGA-A6-3809 TCGA-A6-3809\n",
      "252 200 TCGA-AA-A029 TCGA-AA-A029\n",
      "253 224 TCGA-A6-4107 TCGA-A6-4107\n",
      "255 283 TCGA-4T-AA8H TCGA-4T-AA8H\n",
      "256 214 TCGA-DM-A1D8 TCGA-DM-A1D8\n",
      "257 269 TCGA-AA-3812 TCGA-AA-3812\n",
      "258 314 TCGA-A6-5667 TCGA-A6-5667\n",
      "259 34 TCGA-A6-6650 TCGA-A6-6650\n",
      "259 113 TCGA-A6-6650 TCGA-A6-6650\n",
      "260 396 TCGA-DM-A1D7 TCGA-DM-A1D7\n",
      "261 122 TCGA-AA-3524 TCGA-AA-3524\n",
      "262 46 TCGA-G4-6303 TCGA-G4-6303\n",
      "263 182 TCGA-G4-6297 TCGA-G4-6297\n",
      "264 147 TCGA-G4-6306 TCGA-G4-6306\n",
      "265 208 TCGA-CK-6751 TCGA-CK-6751\n",
      "266 82 TCGA-D5-6532 TCGA-D5-6532\n",
      "267 249 TCGA-AA-3850 TCGA-AA-3850\n",
      "268 137 TCGA-A6-3809 TCGA-A6-3809\n",
      "268 309 TCGA-A6-3809 TCGA-A6-3809\n",
      "269 206 TCGA-AD-A5EK TCGA-AD-A5EK\n",
      "270 177 TCGA-DM-A1D6 TCGA-DM-A1D6\n",
      "271 195 TCGA-D5-6531 TCGA-D5-6531\n",
      "273 79 TCGA-CA-5254 TCGA-CA-5254\n",
      "274 241 TCGA-4N-A93T TCGA-4N-A93T\n",
      "275 222 TCGA-AY-4071 TCGA-AY-4071\n",
      "276 156 TCGA-AA-3858 TCGA-AA-3858\n",
      "277 359 TCGA-AA-3845 TCGA-AA-3845\n",
      "278 5 TCGA-AA-3527 TCGA-AA-3527\n",
      "279 215 TCGA-CA-5256 TCGA-CA-5256\n",
      "280 364 TCGA-CA-5255 TCGA-CA-5255\n",
      "281 347 TCGA-AD-5900 TCGA-AD-5900\n",
      "282 378 TCGA-AA-3544 TCGA-AA-3544\n",
      "283 230 TCGA-A6-2674 TCGA-A6-2674\n",
      "285 254 TCGA-DM-A1DB TCGA-DM-A1DB\n",
      "287 55 TCGA-DM-A1D9 TCGA-DM-A1D9\n",
      "288 320 TCGA-DM-A285 TCGA-DM-A285\n",
      "291 84 TCGA-AA-3967 TCGA-AA-3967\n",
      "292 409 TCGA-A6-6782 TCGA-A6-6782\n",
      "293 153 TCGA-A6-2684 TCGA-A6-2684\n",
      "293 392 TCGA-A6-2684 TCGA-A6-2684\n",
      "294 404 TCGA-DM-A28M TCGA-DM-A28M\n",
      "295 351 TCGA-D5-6535 TCGA-D5-6535\n",
      "296 371 TCGA-CM-6166 TCGA-CM-6166\n",
      "298 115 TCGA-AA-3680 TCGA-AA-3680\n",
      "300 348 TCGA-F4-6808 TCGA-F4-6808\n",
      "303 25 TCGA-CK-4950 TCGA-CK-4950\n",
      "305 50 TCGA-A6-A56B TCGA-A6-A56B\n",
      "307 253 TCGA-G4-6302 TCGA-G4-6302\n",
      "308 134 TCGA-AA-A024 TCGA-AA-A024\n",
      "309 15 TCGA-AA-3530 TCGA-AA-3530\n",
      "310 8 TCGA-CM-5864 TCGA-CM-5864\n",
      "312 52 TCGA-CK-5916 TCGA-CK-5916\n",
      "313 204 TCGA-A6-6654 TCGA-A6-6654\n",
      "314 95 TCGA-D5-6539 TCGA-D5-6539\n",
      "315 184 TCGA-AA-3692 TCGA-AA-3692\n",
      "316 107 TCGA-A6-2671 TCGA-A6-2671\n",
      "317 120 TCGA-AA-A01C TCGA-AA-A01C\n",
      "318 101 TCGA-A6-6651 TCGA-A6-6651\n",
      "319 100 TCGA-CA-5797 TCGA-CA-5797\n",
      "320 56 TCGA-AD-6890 TCGA-AD-6890\n",
      "321 207 TCGA-AA-A02J TCGA-AA-A02J\n",
      "322 35 TCGA-AA-3862 TCGA-AA-3862\n",
      "323 42 TCGA-AA-3994 TCGA-AA-3994\n",
      "324 230 TCGA-A6-2674 TCGA-A6-2674\n",
      "325 22 TCGA-AA-3979 TCGA-AA-3979\n",
      "326 99 TCGA-DM-A1DA TCGA-DM-A1DA\n",
      "329 394 TCGA-DM-A1HA TCGA-DM-A1HA\n",
      "330 28 TCGA-AA-3695 TCGA-AA-3695\n",
      "332 169 TCGA-AA-A02K TCGA-AA-A02K\n",
      "333 93 TCGA-CM-6162 TCGA-CM-6162\n",
      "334 390 TCGA-A6-6653 TCGA-A6-6653\n",
      "335 133 TCGA-AA-3531 TCGA-AA-3531\n",
      "339 66 TCGA-A6-5661 TCGA-A6-5661\n",
      "340 362 TCGA-RU-A8FL TCGA-RU-A8FL\n",
      "341 31 TCGA-CA-6719 TCGA-CA-6719\n",
      "343 272 TCGA-AA-3675 TCGA-AA-3675\n",
      "345 258 TCGA-A6-6140 TCGA-A6-6140\n",
      "346 72 TCGA-AA-3522 TCGA-AA-3522\n",
      "347 37 TCGA-DM-A1HB TCGA-DM-A1HB\n",
      "348 216 TCGA-AA-3955 TCGA-AA-3955\n",
      "350 397 TCGA-AA-3950 TCGA-AA-3950\n",
      "351 0 TCGA-A6-2680 TCGA-A6-2680\n",
      "353 230 TCGA-A6-2674 TCGA-A6-2674\n",
      "354 44 TCGA-A6-2677 TCGA-A6-2677\n",
      "355 171 TCGA-D5-5537 TCGA-D5-5537\n",
      "356 230 TCGA-A6-2674 TCGA-A6-2674\n",
      "357 81 TCGA-F4-6460 TCGA-F4-6460\n",
      "358 174 TCGA-G4-6311 TCGA-G4-6311\n",
      "359 382 TCGA-AA-A00O TCGA-AA-A00O\n",
      "362 48 TCGA-D5-6932 TCGA-D5-6932\n",
      "363 266 TCGA-A6-4105 TCGA-A6-4105\n",
      "364 0 TCGA-A6-2680 TCGA-A6-2680\n",
      "365 152 TCGA-DM-A1D0 TCGA-DM-A1D0\n",
      "366 327 TCGA-D5-6538 TCGA-D5-6538\n",
      "367 387 TCGA-A6-A565 TCGA-A6-A565\n",
      "368 69 TCGA-A6-5656 TCGA-A6-5656\n",
      "368 229 TCGA-A6-5656 TCGA-A6-5656\n",
      "369 308 TCGA-A6-3810 TCGA-A6-3810\n",
      "369 310 TCGA-A6-3810 TCGA-A6-3810\n",
      "372 13 TCGA-SS-A7HO TCGA-SS-A7HO\n",
      "373 98 TCGA-CM-5868 TCGA-CM-5868\n",
      "374 130 TCGA-DM-A28E TCGA-DM-A28E\n",
      "375 78 TCGA-A6-2678 TCGA-A6-2678\n",
      "376 297 TCGA-G4-6315 TCGA-G4-6315\n",
      "377 377 TCGA-D5-6930 TCGA-D5-6930\n",
      "380 75 TCGA-AA-3529 TCGA-AA-3529\n",
      "381 332 TCGA-AA-3968 TCGA-AA-3968\n",
      "382 406 TCGA-NH-A50V TCGA-NH-A50V\n",
      "383 64 TCGA-AA-3854 TCGA-AA-3854\n",
      "384 393 TCGA-AA-3872 TCGA-AA-3872\n",
      "385 237 TCGA-AA-3866 TCGA-AA-3866\n",
      "386 135 TCGA-AA-3846 TCGA-AA-3846\n",
      "387 399 TCGA-D5-6928 TCGA-D5-6928\n",
      "388 339 TCGA-A6-5657 TCGA-A6-5657\n",
      "389 383 TCGA-AA-3561 TCGA-AA-3561\n",
      "390 270 TCGA-G4-6628 TCGA-G4-6628\n",
      "392 223 TCGA-AA-A02E TCGA-AA-A02E\n",
      "393 72 TCGA-AA-3522 TCGA-AA-3522\n",
      "394 262 TCGA-AA-3666 TCGA-AA-3666\n",
      "395 108 TCGA-A6-5659 TCGA-A6-5659\n",
      "395 398 TCGA-A6-5659 TCGA-A6-5659\n",
      "396 285 TCGA-A6-3807 TCGA-A6-3807\n",
      "400 121 TCGA-AA-3514 TCGA-AA-3514\n",
      "401 70 TCGA-A6-A566 TCGA-A6-A566\n",
      "402 199 TCGA-A6-6781 TCGA-A6-6781\n",
      "402 403 TCGA-A6-6781 TCGA-A6-6781\n",
      "403 227 TCGA-AA-3848 TCGA-AA-3848\n",
      "404 127 TCGA-AA-3986 TCGA-AA-3986\n",
      "406 108 TCGA-A6-5659 TCGA-A6-5659\n",
      "406 398 TCGA-A6-5659 TCGA-A6-5659\n",
      "407 213 TCGA-AZ-4313 TCGA-AZ-4313\n",
      "408 92 TCGA-CM-5341 TCGA-CM-5341\n",
      "410 9 TCGA-AA-A01K TCGA-AA-A01K\n",
      "411 58 TCGA-G4-6309 TCGA-G4-6309\n",
      "412 225 TCGA-CM-6161 TCGA-CM-6161\n",
      "413 159 TCGA-AA-3852 TCGA-AA-3852\n",
      "415 3 TCGA-G4-6295 TCGA-G4-6295\n",
      "416 264 TCGA-F4-6570 TCGA-F4-6570\n",
      "417 10 TCGA-CM-5861 TCGA-CM-5861\n",
      "418 78 TCGA-A6-2678 TCGA-A6-2678\n",
      "419 18 TCGA-QG-A5YX TCGA-QG-A5YX\n",
      "420 166 TCGA-G4-6299 TCGA-G4-6299\n",
      "421 51 TCGA-AA-3679 TCGA-AA-3679\n",
      "422 238 TCGA-DM-A280 TCGA-DM-A280\n",
      "423 260 TCGA-AZ-4616 TCGA-AZ-4616\n",
      "424 167 TCGA-AA-3870 TCGA-AA-3870\n",
      "425 280 TCGA-F4-6805 TCGA-F4-6805\n",
      "428 175 TCGA-AA-3952 TCGA-AA-3952\n",
      "429 356 TCGA-CM-6680 TCGA-CM-6680\n",
      "431 139 TCGA-AA-3556 TCGA-AA-3556\n",
      "432 210 TCGA-DM-A0X9 TCGA-DM-A0X9\n",
      "433 369 TCGA-A6-2681 TCGA-A6-2681\n",
      "434 89 TCGA-G4-6298 TCGA-G4-6298\n",
      "435 39 TCGA-AU-6004 TCGA-AU-6004\n",
      "436 30 TCGA-AA-3984 TCGA-AA-3984\n",
      "436 402 TCGA-AA-3984 TCGA-AA-3984\n",
      "437 217 TCGA-CM-5862 TCGA-CM-5862\n",
      "438 285 TCGA-A6-3807 TCGA-A6-3807\n",
      "440 121 TCGA-AA-3514 TCGA-AA-3514\n",
      "441 57 TCGA-AA-3977 TCGA-AA-3977\n",
      "441 67 TCGA-AA-3977 TCGA-AA-3977\n",
      "443 132 TCGA-QG-A5YW TCGA-QG-A5YW\n",
      "446 248 TCGA-AY-6196 TCGA-AY-6196\n",
      "447 36 TCGA-AA-3526 TCGA-AA-3526\n",
      "448 324 TCGA-3L-AA1B TCGA-3L-AA1B\n",
      "449 376 TCGA-AA-3693 TCGA-AA-3693\n",
      "450 303 TCGA-D5-6927 TCGA-D5-6927\n",
      "451 21 TCGA-AA-A02Y TCGA-AA-A02Y\n",
      "452 341 TCGA-NH-A50T TCGA-NH-A50T\n",
      "453 294 TCGA-A6-3808 TCGA-A6-3808\n",
      "454 288 TCGA-CM-6170 TCGA-CM-6170\n",
      "457 41 TCGA-AY-6197 TCGA-AY-6197\n",
      "458 224 TCGA-A6-4107 TCGA-A6-4107\n",
      "459 205 TCGA-D5-6534 TCGA-D5-6534\n",
      "460 268 TCGA-AA-3966 TCGA-AA-3966\n",
      "461 286 TCGA-A6-5660 TCGA-A6-5660\n",
      "462 388 TCGA-AA-3685 TCGA-AA-3685\n",
      "463 360 TCGA-CM-5349 TCGA-CM-5349\n",
      "466 274 TCGA-WS-AB45 TCGA-WS-AB45\n",
      "467 146 TCGA-D5-6541 TCGA-D5-6541\n",
      "468 328 TCGA-QG-A5YV TCGA-QG-A5YV\n",
      "469 226 TCGA-AA-3833 TCGA-AA-3833\n",
      "469 257 TCGA-AA-3833 TCGA-AA-3833\n",
      "470 401 TCGA-DM-A0XF TCGA-DM-A0XF\n",
      "471 126 TCGA-AA-3696 TCGA-AA-3696\n",
      "473 361 TCGA-AD-6889 TCGA-AD-6889\n",
      "474 136 TCGA-AA-3972 TCGA-AA-3972\n",
      "475 308 TCGA-A6-3810 TCGA-A6-3810\n",
      "475 310 TCGA-A6-3810 TCGA-A6-3810\n",
      "477 49 TCGA-D5-5538 TCGA-D5-5538\n",
      "479 2 TCGA-CK-6748 TCGA-CK-6748\n",
      "480 407 TCGA-CM-5344 TCGA-CM-5344\n",
      "481 253 TCGA-G4-6302 TCGA-G4-6302\n",
      "482 3 TCGA-G4-6295 TCGA-G4-6295\n",
      "484 318 TCGA-A6-2682 TCGA-A6-2682\n",
      "485 124 TCGA-CM-6677 TCGA-CM-6677\n",
      "486 194 TCGA-AA-A00N TCGA-AA-A00N\n",
      "486 196 TCGA-AA-A00N TCGA-AA-A00N\n",
      "487 400 TCGA-DM-A28H TCGA-DM-A28H\n",
      "488 183 TCGA-AY-A54L TCGA-AY-A54L\n",
      "489 255 TCGA-D5-5540 TCGA-D5-5540\n",
      "490 88 TCGA-AA-3811 TCGA-AA-3811\n",
      "492 374 TCGA-CA-6717 TCGA-CA-6717\n",
      "493 197 TCGA-AA-3989 TCGA-AA-3989\n",
      "494 343 TCGA-DM-A28K TCGA-DM-A28K\n",
      "495 367 TCGA-D5-5539 TCGA-D5-5539\n",
      "496 331 TCGA-CM-5863 TCGA-CM-5863\n",
      "497 386 TCGA-5M-AAT6 TCGA-5M-AAT6\n",
      "498 234 TCGA-A6-2685 TCGA-A6-2685\n",
      "499 34 TCGA-A6-6650 TCGA-A6-6650\n",
      "499 113 TCGA-A6-6650 TCGA-A6-6650\n",
      "500 318 TCGA-A6-2682 TCGA-A6-2682\n",
      "501 242 TCGA-D5-6929 TCGA-D5-6929\n",
      "502 71 TCGA-CM-6678 TCGA-CM-6678\n",
      "503 53 TCGA-D5-6923 TCGA-D5-6923\n",
      "504 165 TCGA-CM-6165 TCGA-CM-6165\n",
      "505 311 TCGA-G4-6314 TCGA-G4-6314\n",
      "509 43 TCGA-A6-2675 TCGA-A6-2675\n",
      "510 315 TCGA-AY-4070 TCGA-AY-4070\n",
      "512 145 TCGA-AA-3831 TCGA-AA-3831\n",
      "514 57 TCGA-AA-3977 TCGA-AA-3977\n",
      "514 67 TCGA-AA-3977 TCGA-AA-3977\n",
      "515 110 TCGA-CM-6675 TCGA-CM-6675\n",
      "516 173 TCGA-CK-5915 TCGA-CK-5915\n",
      "517 359 TCGA-AA-3845 TCGA-AA-3845\n",
      "520 151 TCGA-A6-2683 TCGA-A6-2683\n",
      "521 104 TCGA-AA-3877 TCGA-AA-3877\n",
      "521 245 TCGA-AA-3877 TCGA-AA-3877\n",
      "522 125 TCGA-AA-3715 TCGA-AA-3715\n",
      "523 153 TCGA-A6-2684 TCGA-A6-2684\n",
      "523 392 TCGA-A6-2684 TCGA-A6-2684\n",
      "524 221 TCGA-AA-3841 TCGA-AA-3841\n",
      "525 44 TCGA-A6-2677 TCGA-A6-2677\n",
      "526 43 TCGA-A6-2675 TCGA-A6-2675\n",
      "527 45 TCGA-CM-5348 TCGA-CM-5348\n",
      "528 306 TCGA-D5-6536 TCGA-D5-6536\n",
      "530 313 TCGA-CM-4744 TCGA-CM-4744\n",
      "531 295 TCGA-D5-6537 TCGA-D5-6537\n",
      "533 338 TCGA-A6-6648 TCGA-A6-6648\n",
      "534 326 TCGA-G4-6294 TCGA-G4-6294\n",
      "535 19 TCGA-AZ-5403 TCGA-AZ-5403\n",
      "536 281 TCGA-A6-6141 TCGA-A6-6141\n",
      "537 103 TCGA-A6-6142 TCGA-A6-6142\n",
      "538 144 TCGA-AA-3939 TCGA-AA-3939\n",
      "540 83 TCGA-AA-A02W TCGA-AA-A02W\n",
      "541 201 TCGA-A6-2686 TCGA-A6-2686\n",
      "542 278 TCGA-CM-6171 TCGA-CM-6171\n",
      "543 186 TCGA-AZ-4682 TCGA-AZ-4682\n",
      "544 111 TCGA-CM-6172 TCGA-CM-6172\n",
      "545 91 TCGA-CK-5913 TCGA-CK-5913\n",
      "546 86 TCGA-G4-6320 TCGA-G4-6320\n",
      "547 373 TCGA-CK-5914 TCGA-CK-5914\n",
      "548 1 TCGA-D5-6926 TCGA-D5-6926\n",
      "549 319 TCGA-AZ-4614 TCGA-AZ-4614\n",
      "551 112 TCGA-F4-6809 TCGA-F4-6809\n",
      "552 73 TCGA-AY-A69D TCGA-AY-A69D\n",
      "553 389 TCGA-AA-3519 TCGA-AA-3519\n",
      "554 301 TCGA-AZ-5407 TCGA-AZ-5407\n",
      "555 317 TCGA-AA-3867 TCGA-AA-3867\n",
      "556 201 TCGA-A6-2686 TCGA-A6-2686\n",
      "557 202 TCGA-A6-6780 TCGA-A6-6780\n",
      "557 259 TCGA-A6-6780 TCGA-A6-6780\n",
      "558 339 TCGA-A6-5657 TCGA-A6-5657\n",
      "559 191 TCGA-CK-4951 TCGA-CK-4951\n",
      "561 500 TCGA-AF-3400 TCGA-AF-3400\n",
      "562 544 TCGA-DY-A1H8 TCGA-DY-A1H8\n",
      "563 537 TCGA-DC-5869 TCGA-DC-5869\n",
      "564 483 TCGA-CI-6623 TCGA-CI-6623\n",
      "565 457 TCGA-AG-3892 TCGA-AG-3892\n",
      "566 547 TCGA-F5-6814 TCGA-F5-6814\n",
      "567 481 TCGA-AG-3898 TCGA-AG-3898\n",
      "568 448 TCGA-AG-3896 TCGA-AG-3896\n",
      "569 553 TCGA-AG-A00C TCGA-AG-A00C\n",
      "571 418 TCGA-F5-6813 TCGA-F5-6813\n",
      "573 473 TCGA-AG-3605 TCGA-AG-3605\n",
      "574 420 TCGA-AG-3574 TCGA-AG-3574\n",
      "576 499 TCGA-DC-6155 TCGA-DC-6155\n",
      "577 504 TCGA-AF-2691 TCGA-AF-2691\n",
      "578 467 TCGA-AG-3583 TCGA-AG-3583\n",
      "579 505 TCGA-AG-3727 TCGA-AG-3727\n",
      "581 502 TCGA-AG-3575 TCGA-AG-3575\n",
      "582 504 TCGA-AF-2691 TCGA-AF-2691\n",
      "583 518 TCGA-F5-6812 TCGA-F5-6812\n",
      "584 556 TCGA-DC-6682 TCGA-DC-6682\n",
      "585 494 TCGA-AG-3584 TCGA-AG-3584\n",
      "586 455 TCGA-AG-A01N TCGA-AG-A01N\n",
      "588 545 TCGA-EI-6883 TCGA-EI-6883\n",
      "589 415 TCGA-EI-6507 TCGA-EI-6507\n",
      "590 457 TCGA-AG-3892 TCGA-AG-3892\n",
      "591 561 TCGA-EI-6881 TCGA-EI-6881\n",
      "592 514 TCGA-AG-3901 TCGA-AG-3901\n",
      "594 416 TCGA-AG-3591 TCGA-AG-3591\n",
      "595 436 TCGA-AG-4015 TCGA-AG-4015\n",
      "597 546 TCGA-F5-6810 TCGA-F5-6810\n",
      "598 533 TCGA-AF-2693 TCGA-AF-2693\n",
      "599 426 TCGA-EI-7004 TCGA-EI-7004\n",
      "600 532 TCGA-DC-4749 TCGA-DC-4749\n",
      "601 510 TCGA-AG-4005 TCGA-AG-4005\n",
      "602 435 TCGA-F5-6864 TCGA-F5-6864\n",
      "604 553 TCGA-AG-A00C TCGA-AG-A00C\n",
      "607 482 TCGA-EI-6509 TCGA-EI-6509\n",
      "608 538 TCGA-AG-4001 TCGA-AG-4001\n",
      "609 520 TCGA-DC-4745 TCGA-DC-4745\n",
      "610 438 TCGA-AG-A011 TCGA-AG-A011\n",
      "611 442 TCGA-AG-3598 TCGA-AG-3598\n",
      "612 461 TCGA-AG-3594 TCGA-AG-3594\n",
      "614 453 TCGA-AG-3726 TCGA-AG-3726\n",
      "615 497 TCGA-AG-A008 TCGA-AG-A008\n",
      "616 540 TCGA-AF-2692 TCGA-AF-2692\n",
      "618 484 TCGA-AF-6655 TCGA-AF-6655\n",
      "619 536 TCGA-AG-3902 TCGA-AG-3902\n",
      "620 424 TCGA-AH-6897 TCGA-AH-6897\n",
      "621 500 TCGA-AF-3400 TCGA-AF-3400\n",
      "623 539 TCGA-AF-5654 TCGA-AF-5654\n",
      "624 539 TCGA-AF-5654 TCGA-AF-5654\n",
      "625 434 TCGA-DC-6157 TCGA-DC-6157\n",
      "627 439 TCGA-CI-6619 TCGA-CI-6619\n",
      "628 414 TCGA-AG-A02G TCGA-AG-A02G\n",
      "631 560 TCGA-DY-A1DF TCGA-DY-A1DF\n",
      "633 527 TCGA-AG-3883 TCGA-AG-3883\n",
      "634 480 TCGA-AG-4021 TCGA-AG-4021\n",
      "635 466 TCGA-AG-3999 TCGA-AG-3999\n",
      "636 468 TCGA-DY-A1DG TCGA-DY-A1DG\n",
      "637 485 TCGA-AG-A023 TCGA-AG-A023\n",
      "638 496 TCGA-AG-3885 TCGA-AG-3885\n",
      "639 432 TCGA-AG-3599 TCGA-AG-3599\n",
      "640 486 TCGA-AH-6644 TCGA-AH-6644\n",
      "641 550 TCGA-EI-6512 TCGA-EI-6512\n",
      "642 516 TCGA-AH-6903 TCGA-AH-6903\n",
      "643 506 TCGA-AG-3878 TCGA-AG-3878\n",
      "645 508 TCGA-AG-3891 TCGA-AG-3891\n",
      "646 431 TCGA-EI-6513 TCGA-EI-6513\n",
      "647 444 TCGA-AF-6672 TCGA-AF-6672\n",
      "648 441 TCGA-DY-A1DC TCGA-DY-A1DC\n",
      "649 422 TCGA-AG-3893 TCGA-AG-3893\n",
      "650 503 TCGA-EI-6511 TCGA-EI-6511\n",
      "651 475 TCGA-AG-3580 TCGA-AG-3580\n",
      "652 465 TCGA-BM-6198 TCGA-BM-6198\n",
      "653 558 TCGA-AG-4007 TCGA-AG-4007\n",
      "654 472 TCGA-AG-3592 TCGA-AG-3592\n",
      "655 519 TCGA-AG-A015 TCGA-AG-A015\n",
      "656 549 TCGA-G5-6235 TCGA-G5-6235\n",
      "657 492 TCGA-AG-A025 TCGA-AG-A025\n",
      "658 459 TCGA-AG-3894 TCGA-AG-3894\n",
      "659 478 TCGA-AF-2689 TCGA-AF-2689\n",
      "660 512 TCGA-AG-A00H TCGA-AG-A00H\n",
      "664 456 TCGA-EI-6510 TCGA-EI-6510\n",
      "665 559 TCGA-DC-6158 TCGA-DC-6158\n",
      "667 463 TCGA-AG-A00Y TCGA-AG-A00Y\n",
      "668 417 TCGA-AG-A032 TCGA-AG-A032\n",
      "669 507 TCGA-G5-6233 TCGA-G5-6233\n",
      "670 419 TCGA-AF-6136 TCGA-AF-6136\n",
      "671 543 TCGA-EI-7002 TCGA-EI-7002\n",
      "672 470 TCGA-F5-6465 TCGA-F5-6465\n",
      "673 430 TCGA-AG-3890 TCGA-AG-3890\n",
      "674 530 TCGA-F5-6811 TCGA-F5-6811\n",
      "675 471 TCGA-DC-6154 TCGA-DC-6154\n",
      "676 450 TCGA-AG-4008 TCGA-AG-4008\n",
      "677 534 TCGA-CL-5918 TCGA-CL-5918\n",
      "678 497 TCGA-AG-A008 TCGA-AG-A008\n",
      "679 446 TCGA-AG-A002 TCGA-AG-A002\n",
      "681 513 TCGA-DC-6160 TCGA-DC-6160\n",
      "682 552 TCGA-EI-6506 TCGA-EI-6506\n",
      "683 562 TCGA-AG-3581 TCGA-AG-3581\n",
      "685 429 TCGA-DT-5265 TCGA-DT-5265\n",
      "686 445 TCGA-EI-6514 TCGA-EI-6514\n",
      "687 449 TCGA-AG-A014 TCGA-AG-A014\n",
      "688 464 TCGA-CL-4957 TCGA-CL-4957\n",
      "689 490 TCGA-EI-6885 TCGA-EI-6885\n",
      "690 421 TCGA-AH-6544 TCGA-AH-6544\n",
      "691 498 TCGA-EF-5830 TCGA-EF-5830\n",
      "693 447 TCGA-CI-6620 TCGA-CI-6620\n",
      "694 474 TCGA-AG-3882 TCGA-AG-3882\n",
      "695 460 TCGA-AF-4110 TCGA-AF-4110\n",
      "696 489 TCGA-AG-3602 TCGA-AG-3602\n",
      "697 487 TCGA-EI-6882 TCGA-EI-6882\n",
      "698 493 TCGA-CI-6621 TCGA-CI-6621\n",
      "699 515 TCGA-CL-5917 TCGA-CL-5917\n",
      "700 454 TCGA-F5-6863 TCGA-F5-6863\n",
      "701 528 TCGA-G5-6572 TCGA-G5-6572\n",
      "702 540 TCGA-AF-2692 TCGA-AF-2692\n",
      "703 427 TCGA-AG-3728 TCGA-AG-3728\n",
      "704 542 TCGA-AF-3911 TCGA-AF-3911\n",
      "705 437 TCGA-EI-6884 TCGA-EI-6884\n",
      "706 469 TCGA-AF-A56L TCGA-AF-A56L\n",
      "707 524 TCGA-CI-6624 TCGA-CI-6624\n",
      "708 535 TCGA-DC-6683 TCGA-DC-6683\n",
      "709 479 TCGA-G5-6641 TCGA-G5-6641\n",
      "710 488 TCGA-AG-A02X TCGA-AG-A02X\n",
      "711 478 TCGA-AF-2689 TCGA-AF-2689\n",
      "713 523 TCGA-DC-6681 TCGA-DC-6681\n",
      "714 423 TCGA-AG-A01L TCGA-AG-A01L\n",
      "715 548 TCGA-AF-A56K TCGA-AF-A56K\n",
      "718 522 TCGA-AG-A01J TCGA-AG-A01J\n",
      "719 440 TCGA-DY-A1DD TCGA-DY-A1DD\n",
      "720 557 TCGA-AG-A016 TCGA-AG-A016\n",
      "721 410 TCGA-AF-A56N TCGA-AF-A56N\n",
      "722 511 TCGA-AG-3906 TCGA-AG-3906\n",
      "723 529 TCGA-DC-5337 TCGA-DC-5337\n",
      "724 452 TCGA-AG-A026 TCGA-AG-A026\n",
      "725 517 TCGA-EI-6508 TCGA-EI-6508\n",
      "726 428 TCGA-F5-6702 TCGA-F5-6702\n",
      "727 495 TCGA-AG-3887 TCGA-AG-3887\n",
      "728 555 TCGA-AG-3881 TCGA-AG-3881\n",
      "729 551 TCGA-AG-3909 TCGA-AG-3909\n",
      "730 526 TCGA-F5-6464 TCGA-F5-6464\n",
      "731 519 TCGA-AG-A015 TCGA-AG-A015\n",
      "732 541 TCGA-F5-6861 TCGA-F5-6861\n",
      "733 412 TCGA-DY-A0XA TCGA-DY-A0XA\n",
      "734 433 TCGA-AF-2690 TCGA-AF-2690\n",
      "735 521 TCGA-AG-4022 TCGA-AG-4022\n",
      "736 451 TCGA-F5-6571 TCGA-F5-6571\n",
      "737 413 TCGA-AG-4009 TCGA-AG-4009\n",
      "738 425 TCGA-CI-6622 TCGA-CI-6622\n",
      "739 554 TCGA-AF-2687 TCGA-AF-2687\n",
      "741 491 TCGA-AH-6549 TCGA-AH-6549\n",
      "742 501 TCGA-EI-6917 TCGA-EI-6917\n",
      "743 873 TCGA-CQ-5334 TCGA-CQ-5334\n",
      "744 784 TCGA-CN-6024 TCGA-CN-6024\n",
      "745 688 TCGA-H7-A6C4 TCGA-H7-A6C4\n",
      "746 1061 TCGA-CV-6934 TCGA-CV-6934\n",
      "747 613 TCGA-CN-A640 TCGA-CN-A640\n",
      "748 967 TCGA-D6-A74Q TCGA-D6-A74Q\n",
      "749 982 TCGA-CV-7422 TCGA-CV-7422\n",
      "750 853 TCGA-CV-5435 TCGA-CV-5435\n",
      "751 573 TCGA-BB-A5HZ TCGA-BB-A5HZ\n",
      "752 1039 TCGA-CV-A465 TCGA-CV-A465\n",
      "753 696 TCGA-CV-A6JM TCGA-CV-A6JM\n",
      "754 564 TCGA-CV-7430 TCGA-CV-7430\n",
      "755 628 TCGA-P3-A6T0 TCGA-P3-A6T0\n",
      "756 882 TCGA-CV-7425 TCGA-CV-7425\n",
      "758 798 TCGA-CV-7103 TCGA-CV-7103\n",
      "759 880 TCGA-CN-6012 TCGA-CN-6012\n",
      "760 888 TCGA-CV-5434 TCGA-CV-5434\n",
      "761 686 TCGA-UF-A7JV TCGA-UF-A7JV\n",
      "762 795 TCGA-CR-7383 TCGA-CR-7383\n",
      "763 805 TCGA-CQ-7064 TCGA-CQ-7064\n",
      "764 818 TCGA-HD-8635 TCGA-HD-8635\n",
      "765 1010 TCGA-CN-A642 TCGA-CN-A642\n",
      "766 922 TCGA-P3-A5QE TCGA-P3-A5QE\n",
      "767 788 TCGA-F7-A50G TCGA-F7-A50G\n",
      "768 607 TCGA-BA-A6DI TCGA-BA-A6DI\n",
      "769 1028 TCGA-BA-4076 TCGA-BA-4076\n",
      "770 813 TCGA-CV-5432 TCGA-CV-5432\n",
      "771 793 TCGA-CV-6935 TCGA-CV-6935\n",
      "772 707 TCGA-CV-A45Q TCGA-CV-A45Q\n",
      "773 1040 TCGA-CQ-5326 TCGA-CQ-5326\n",
      "774 764 TCGA-CV-7413 TCGA-CV-7413\n",
      "775 753 TCGA-CV-6939 TCGA-CV-6939\n",
      "776 849 TCGA-BA-A4IF TCGA-BA-A4IF\n",
      "777 940 TCGA-CV-5970 TCGA-CV-5970\n",
      "778 866 TCGA-CN-A499 TCGA-CN-A499\n",
      "779 712 TCGA-BB-A5HU TCGA-BB-A5HU\n",
      "780 1051 TCGA-IQ-7630 TCGA-IQ-7630\n",
      "781 726 TCGA-BA-A6DG TCGA-BA-A6DG\n",
      "783 811 TCGA-HD-8634 TCGA-HD-8634\n",
      "784 568 TCGA-CV-7097 TCGA-CV-7097\n",
      "785 1053 TCGA-CV-A6JD TCGA-CV-A6JD\n",
      "786 847 TCGA-CV-7415 TCGA-CV-7415\n",
      "787 935 TCGA-CR-7377 TCGA-CR-7377\n",
      "788 867 TCGA-D6-A6EP TCGA-D6-A6EP\n",
      "789 755 TCGA-CV-7090 TCGA-CV-7090\n",
      "790 826 TCGA-CR-5247 TCGA-CR-5247\n",
      "791 639 TCGA-CN-4742 TCGA-CN-4742\n",
      "792 987 TCGA-CV-7438 TCGA-CV-7438\n",
      "793 966 TCGA-F7-8298 TCGA-F7-8298\n",
      "796 577 TCGA-CN-4730 TCGA-CN-4730\n",
      "797 591 TCGA-CN-A497 TCGA-CN-A497\n",
      "798 879 TCGA-CV-7235 TCGA-CV-7235\n",
      "799 825 TCGA-CV-6942 TCGA-CV-6942\n",
      "800 614 TCGA-BA-6868 TCGA-BA-6868\n",
      "801 774 TCGA-BA-A6DL TCGA-BA-A6DL\n",
      "802 901 TCGA-TN-A7HJ TCGA-TN-A7HJ\n",
      "803 921 TCGA-CV-A6JN TCGA-CV-A6JN\n",
      "805 827 TCGA-D6-A6EO TCGA-D6-A6EO\n",
      "806 737 TCGA-CV-7433 TCGA-CV-7433\n",
      "807 975 TCGA-CR-7395 TCGA-CR-7395\n",
      "808 836 TCGA-CQ-A4C6 TCGA-CQ-A4C6\n",
      "809 886 TCGA-HD-7753 TCGA-HD-7753\n",
      "810 861 TCGA-CR-6471 TCGA-CR-6471\n",
      "811 1062 TCGA-CV-A45R TCGA-CV-A45R\n",
      "812 762 TCGA-CQ-A4C9 TCGA-CQ-A4C9\n",
      "813 636 TCGA-CV-6943 TCGA-CV-6943\n",
      "814 917 TCGA-CV-A45X TCGA-CV-A45X\n",
      "815 1055 TCGA-CV-A45O TCGA-CV-A45O\n",
      "816 615 TCGA-CR-7371 TCGA-CR-7371\n",
      "817 868 TCGA-CN-6023 TCGA-CN-6023\n",
      "818 804 TCGA-4P-AA8J TCGA-4P-AA8J\n",
      "819 973 TCGA-BA-5556 TCGA-BA-5556\n",
      "820 1020 TCGA-BB-4228 TCGA-BB-4228\n",
      "821 786 TCGA-CV-5966 TCGA-CV-5966\n",
      "822 865 TCGA-CV-5430 TCGA-CV-5430\n",
      "823 595 TCGA-CR-7380 TCGA-CR-7380\n",
      "824 649 TCGA-P3-A6T3 TCGA-P3-A6T3\n",
      "825 693 TCGA-UF-A7JS TCGA-UF-A7JS\n",
      "826 1001 TCGA-CV-6940 TCGA-CV-6940\n",
      "827 646 TCGA-BA-A6D8 TCGA-BA-A6D8\n",
      "829 838 TCGA-CV-7248 TCGA-CV-7248\n",
      "830 870 TCGA-MT-A51X TCGA-MT-A51X\n",
      "831 857 TCGA-T3-A92N TCGA-T3-A92N\n",
      "832 567 TCGA-CV-6933 TCGA-CV-6933\n",
      "833 1059 TCGA-CV-7101 TCGA-CV-7101\n",
      "834 663 TCGA-CN-6994 TCGA-CN-6994\n",
      "835 1027 TCGA-DQ-5631 TCGA-DQ-5631\n",
      "836 599 TCGA-CQ-5332 TCGA-CQ-5332\n",
      "837 908 TCGA-HD-A6I0 TCGA-HD-A6I0\n",
      "838 983 TCGA-CQ-6222 TCGA-CQ-6222\n",
      "839 764 TCGA-CV-7413 TCGA-CV-7413\n",
      "840 565 TCGA-CV-7437 TCGA-CV-7437\n",
      "841 958 TCGA-QK-A8Z9 TCGA-QK-A8Z9\n",
      "842 750 TCGA-CV-7435 TCGA-CV-7435\n",
      "843 651 TCGA-CN-6017 TCGA-CN-6017\n",
      "844 719 TCGA-QK-A8Z7 TCGA-QK-A8Z7\n",
      "845 581 TCGA-CV-A463 TCGA-CV-A463\n",
      "846 794 TCGA-CV-7568 TCGA-CV-7568\n",
      "847 978 TCGA-CN-4737 TCGA-CN-4737\n",
      "848 992 TCGA-CV-7183 TCGA-CV-7183\n",
      "849 620 TCGA-CQ-A4CG TCGA-CQ-A4CG\n",
      "850 947 TCGA-CV-7427 TCGA-CV-7427\n",
      "851 1036 TCGA-CQ-7063 TCGA-CQ-7063\n",
      "852 567 TCGA-CV-6933 TCGA-CV-6933\n",
      "853 758 TCGA-CN-6016 TCGA-CN-6016\n",
      "854 723 TCGA-CV-7418 TCGA-CV-7418\n",
      "855 763 TCGA-UF-A7JJ TCGA-UF-A7JJ\n",
      "856 605 TCGA-CV-6956 TCGA-CV-6956\n",
      "857 706 TCGA-CV-6938 TCGA-CV-6938\n",
      "858 695 TCGA-CN-A63V TCGA-CN-A63V\n",
      "859 821 TCGA-CN-A6V6 TCGA-CN-A6V6\n",
      "860 653 TCGA-BB-8601 TCGA-BB-8601\n",
      "861 1007 TCGA-QK-A6IH TCGA-QK-A6IH\n",
      "862 903 TCGA-CR-7370 TCGA-CR-7370\n",
      "863 742 TCGA-CV-7253 TCGA-CV-7253\n",
      "864 1015 TCGA-CR-7398 TCGA-CR-7398\n",
      "865 1018 TCGA-CQ-6218 TCGA-CQ-6218\n",
      "866 733 TCGA-QK-A8ZA TCGA-QK-A8ZA\n",
      "867 1014 TCGA-D6-A6EN TCGA-D6-A6EN\n",
      "869 800 TCGA-CR-7404 TCGA-CR-7404\n",
      "870 990 TCGA-CR-7390 TCGA-CR-7390\n",
      "871 633 TCGA-D6-A6EQ TCGA-D6-A6EQ\n",
      "872 720 TCGA-CR-7399 TCGA-CR-7399\n",
      "873 814 TCGA-CV-7095 TCGA-CV-7095\n",
      "874 938 TCGA-UF-A7JT TCGA-UF-A7JT\n",
      "875 1065 TCGA-CV-7423 TCGA-CV-7423\n",
      "876 787 TCGA-BB-A5HY TCGA-BB-A5HY\n",
      "877 1032 TCGA-IQ-7631 TCGA-IQ-7631\n",
      "878 645 TCGA-KU-A6H7 TCGA-KU-A6H7\n",
      "879 708 TCGA-CQ-5324 TCGA-CQ-5324\n",
      "881 652 TCGA-CV-A45Z TCGA-CV-A45Z\n",
      "882 814 TCGA-CV-7095 TCGA-CV-7095\n",
      "883 771 TCGA-CR-7402 TCGA-CR-7402\n",
      "884 888 TCGA-CV-5434 TCGA-CV-5434\n",
      "885 592 TCGA-CQ-6219 TCGA-CQ-6219\n",
      "886 650 TCGA-CV-7429 TCGA-CV-7429\n",
      "887 872 TCGA-IQ-A61H TCGA-IQ-A61H\n",
      "888 853 TCGA-CV-5435 TCGA-CV-5435\n",
      "889 1069 TCGA-CN-A63Y TCGA-CN-A63Y\n",
      "890 655 TCGA-CN-A641 TCGA-CN-A641\n",
      "891 579 TCGA-MZ-A7D7 TCGA-MZ-A7D7\n",
      "892 703 TCGA-TN-A7HI TCGA-TN-A7HI\n",
      "893 1033 TCGA-QK-A6IJ TCGA-QK-A6IJ\n",
      "895 583 TCGA-CX-7085 TCGA-CX-7085\n",
      "896 953 TCGA-CV-A6K0 TCGA-CV-A6K0\n",
      "897 980 TCGA-IQ-A61G TCGA-IQ-A61G\n",
      "899 717 TCGA-HD-7831 TCGA-HD-7831\n",
      "901 813 TCGA-CV-5432 TCGA-CV-5432\n",
      "902 699 TCGA-CV-A45U TCGA-CV-A45U\n",
      "903 766 TCGA-CX-7086 TCGA-CX-7086\n",
      "905 844 TCGA-CR-6487 TCGA-CR-6487\n",
      "906 670 TCGA-CN-5356 TCGA-CN-5356\n",
      "907 1012 TCGA-CV-7091 TCGA-CV-7091\n",
      "908 835 TCGA-D6-A6EK TCGA-D6-A6EK\n",
      "909 753 TCGA-CV-6939 TCGA-CV-6939\n",
      "910 960 TCGA-CN-5370 TCGA-CN-5370\n",
      "911 680 TCGA-CN-6013 TCGA-CN-6013\n",
      "912 756 TCGA-CR-6493 TCGA-CR-6493\n",
      "913 1048 TCGA-CR-7382 TCGA-CR-7382\n",
      "914 809 TCGA-BA-A4IH TCGA-BA-A4IH\n",
      "915 954 TCGA-T2-A6WX TCGA-T2-A6WX\n",
      "916 864 TCGA-DQ-7596 TCGA-DQ-7596\n",
      "917 1026 TCGA-F7-A50I TCGA-F7-A50I\n",
      "918 773 TCGA-P3-A6SX TCGA-P3-A6SX\n",
      "919 725 TCGA-CV-7178 TCGA-CV-7178\n",
      "920 598 TCGA-CV-6952 TCGA-CV-6952\n",
      "921 750 TCGA-CV-7435 TCGA-CV-7435\n",
      "922 817 TCGA-CR-7379 TCGA-CR-7379\n",
      "923 1023 TCGA-D6-6826 TCGA-D6-6826\n",
      "924 672 TCGA-CN-6018 TCGA-CN-6018\n",
      "925 854 TCGA-T3-A92M TCGA-T3-A92M\n",
      "928 757 TCGA-HD-A4C1 TCGA-HD-A4C1\n",
      "929 723 TCGA-CV-7418 TCGA-CV-7418\n",
      "930 1041 TCGA-CQ-6220 TCGA-CQ-6220\n",
      "931 564 TCGA-CV-7430 TCGA-CV-7430\n",
      "932 637 TCGA-DQ-5624 TCGA-DQ-5624\n",
      "933 904 TCGA-F7-A624 TCGA-F7-A624\n",
      "934 575 TCGA-CV-6960 TCGA-CV-6960\n",
      "935 859 TCGA-CR-6474 TCGA-CR-6474\n",
      "936 612 TCGA-UF-A71E TCGA-UF-A71E\n",
      "937 1065 TCGA-CV-7423 TCGA-CV-7423\n",
      "938 662 TCGA-CQ-5325 TCGA-CQ-5325\n",
      "939 992 TCGA-CV-7183 TCGA-CV-7183\n",
      "940 936 TCGA-BB-4224 TCGA-BB-4224\n",
      "941 619 TCGA-CN-5369 TCGA-CN-5369\n",
      "942 642 TCGA-CV-7261 TCGA-CV-7261\n",
      "943 802 TCGA-CV-6951 TCGA-CV-6951\n",
      "944 769 TCGA-BB-A6UO TCGA-BB-A6UO\n",
      "945 780 TCGA-CV-7250 TCGA-CV-7250\n",
      "946 660 TCGA-BA-A4II TCGA-BA-A4II\n",
      "947 1019 TCGA-CV-A461 TCGA-CV-A461\n",
      "948 721 TCGA-F7-A61V TCGA-F7-A61V\n",
      "949 993 TCGA-CV-7243 TCGA-CV-7243\n",
      "950 994 TCGA-CN-4733 TCGA-CN-4733\n",
      "951 570 TCGA-MT-A7BN TCGA-MT-A7BN\n",
      "952 1059 TCGA-CV-7101 TCGA-CV-7101\n",
      "953 822 TCGA-CV-A45W TCGA-CV-A45W\n",
      "954 890 TCGA-T2-A6WZ TCGA-T2-A6WZ\n",
      "956 995 TCGA-CV-7236 TCGA-CV-7236\n",
      "957 801 TCGA-CN-5360 TCGA-CN-5360\n",
      "958 790 TCGA-CR-6492 TCGA-CR-6492\n",
      "959 812 TCGA-CQ-6225 TCGA-CQ-6225\n",
      "960 927 TCGA-BA-5559 TCGA-BA-5559\n",
      "961 965 TCGA-P3-A5Q6 TCGA-P3-A5Q6\n",
      "962 876 TCGA-HD-8224 TCGA-HD-8224\n",
      "963 603 TCGA-QK-A6V9 TCGA-QK-A6V9\n",
      "964 925 TCGA-CV-7434 TCGA-CV-7434\n",
      "965 715 TCGA-CV-A460 TCGA-CV-A460\n",
      "966 970 TCGA-CV-7238 TCGA-CV-7238\n",
      "967 716 TCGA-CQ-6224 TCGA-CQ-6224\n",
      "968 934 TCGA-CV-A6JU TCGA-CV-A6JU\n",
      "969 778 TCGA-CN-4736 TCGA-CN-4736\n",
      "970 572 TCGA-CV-7263 TCGA-CV-7263\n",
      "971 589 TCGA-CQ-A4C7 TCGA-CQ-A4C7\n",
      "972 608 TCGA-CR-7401 TCGA-CR-7401\n",
      "974 971 TCGA-P3-A6T5 TCGA-P3-A6T5\n",
      "975 610 TCGA-CN-6019 TCGA-CN-6019\n",
      "976 948 TCGA-CV-5436 TCGA-CV-5436\n",
      "977 837 TCGA-CN-4741 TCGA-CN-4741\n",
      "978 1013 TCGA-MT-A67F TCGA-MT-A67F\n",
      "979 1005 TCGA-T2-A6X0 TCGA-T2-A6X0\n",
      "980 932 TCGA-CQ-6223 TCGA-CQ-6223\n",
      "981 839 TCGA-CR-7372 TCGA-CR-7372\n",
      "982 684 TCGA-CV-A6K1 TCGA-CV-A6K1\n",
      "984 818 TCGA-HD-8635 TCGA-HD-8635\n",
      "985 976 TCGA-CQ-A4CD TCGA-CQ-A4CD\n",
      "987 802 TCGA-CV-6951 TCGA-CV-6951\n",
      "988 611 TCGA-CV-7424 TCGA-CV-7424\n",
      "989 584 TCGA-DQ-5630 TCGA-DQ-5630\n",
      "990 1012 TCGA-CV-7091 TCGA-CV-7091\n",
      "991 563 TCGA-BA-6873 TCGA-BA-6873\n",
      "993 682 TCGA-BB-4223 TCGA-BB-4223\n",
      "994 642 TCGA-CV-7261 TCGA-CV-7261\n",
      "995 718 TCGA-H7-7774 TCGA-H7-7774\n",
      "996 895 TCGA-D6-A4Z9 TCGA-D6-A4Z9\n",
      "997 829 TCGA-CN-6995 TCGA-CN-6995\n",
      "998 896 TCGA-D6-6515 TCGA-D6-6515\n",
      "999 768 TCGA-D6-8569 TCGA-D6-8569\n",
      "1000 594 TCGA-KU-A66S TCGA-KU-A66S\n",
      "1001 969 TCGA-HD-8314 TCGA-HD-8314\n",
      "1002 580 TCGA-IQ-A61I TCGA-IQ-A61I\n",
      "1003 810 TCGA-CN-5358 TCGA-CN-5358\n",
      "1004 697 TCGA-CR-6472 TCGA-CR-6472\n",
      "1005 676 TCGA-D6-6517 TCGA-D6-6517\n",
      "1006 1045 TCGA-UF-A71B TCGA-UF-A71B\n",
      "1007 914 TCGA-UF-A718 TCGA-UF-A718\n",
      "1008 977 TCGA-CR-7369 TCGA-CR-7369\n",
      "1009 948 TCGA-CV-5436 TCGA-CV-5436\n",
      "1010 915 TCGA-CR-5249 TCGA-CR-5249\n",
      "1011 1037 TCGA-CQ-6229 TCGA-CQ-6229\n",
      "1012 566 TCGA-F7-A622 TCGA-F7-A622\n",
      "1013 776 TCGA-CR-7368 TCGA-CR-7368\n",
      "1014 741 TCGA-UF-A7JD TCGA-UF-A7JD\n",
      "1015 772 TCGA-CN-4723 TCGA-CN-4723\n",
      "1016 1042 TCGA-CN-A6V3 TCGA-CN-A6V3\n",
      "1017 616 TCGA-MT-A51W TCGA-MT-A51W\n",
      "1018 863 TCGA-CQ-6228 TCGA-CQ-6228\n",
      "1019 738 TCGA-BB-7870 TCGA-BB-7870\n",
      "1020 596 TCGA-CN-5359 TCGA-CN-5359\n",
      "1021 1038 TCGA-CV-7242 TCGA-CV-7242\n",
      "1022 661 TCGA-UF-A71D TCGA-UF-A71D\n",
      "1023 806 TCGA-DQ-7592 TCGA-DQ-7592\n",
      "1024 909 TCGA-CV-A45P TCGA-CV-A45P\n",
      "1025 957 TCGA-QK-A8ZB TCGA-QK-A8ZB\n",
      "1026 791 TCGA-CV-7089 TCGA-CV-7089\n",
      "1027 600 TCGA-CQ-7069 TCGA-CQ-7069\n",
      "1028 830 TCGA-CR-6470 TCGA-CR-6470\n",
      "1029 897 TCGA-CV-7247 TCGA-CV-7247\n",
      "1030 887 TCGA-IQ-A61O TCGA-IQ-A61O\n",
      "1031 845 TCGA-CV-6953 TCGA-CV-6953\n",
      "1032 893 TCGA-BA-A6DF TCGA-BA-A6DF\n",
      "1033 1060 TCGA-CR-7376 TCGA-CR-7376\n",
      "1034 939 TCGA-D6-6825 TCGA-D6-6825\n",
      "1036 691 TCGA-CV-6959 TCGA-CV-6959\n",
      "1037 877 TCGA-BA-4074 TCGA-BA-4074\n",
      "1038 601 TCGA-CQ-A4CE TCGA-CQ-A4CE\n",
      "1039 850 TCGA-D6-6823 TCGA-D6-6823\n",
      "1040 832 TCGA-DQ-7588 TCGA-DQ-7588\n",
      "1041 692 TCGA-F7-A61S TCGA-F7-A61S\n",
      "1044 905 TCGA-BA-5151 TCGA-BA-5151\n",
      "1046 824 TCGA-CR-7373 TCGA-CR-7373\n",
      "1047 713 TCGA-BA-5558 TCGA-BA-5558\n",
      "1049 659 TCGA-HD-7229 TCGA-HD-7229\n",
      "1050 789 TCGA-CR-5250 TCGA-CR-5250\n",
      "1051 568 TCGA-CV-7097 TCGA-CV-7097\n",
      "1053 848 TCGA-CR-7374 TCGA-CR-7374\n",
      "1054 664 TCGA-CV-6948 TCGA-CV-6948\n",
      "1055 851 TCGA-CV-7252 TCGA-CV-7252\n",
      "1056 704 TCGA-CV-7177 TCGA-CV-7177\n",
      "1057 1025 TCGA-CN-5374 TCGA-CN-5374\n",
      "1058 701 TCGA-CR-7391 TCGA-CR-7391\n",
      "1060 618 TCGA-BB-4227 TCGA-BB-4227\n",
      "1061 1038 TCGA-CV-7242 TCGA-CV-7242\n",
      "1062 629 TCGA-BA-5555 TCGA-BA-5555\n",
      "1063 924 TCGA-UF-A71A TCGA-UF-A71A\n",
      "1064 690 TCGA-CN-5355 TCGA-CN-5355\n",
      "1065 1030 TCGA-CN-6022 TCGA-CN-6022\n",
      "1066 793 TCGA-CV-6935 TCGA-CV-6935\n",
      "1067 748 TCGA-QK-A6II TCGA-QK-A6II\n",
      "1068 845 TCGA-CV-6953 TCGA-CV-6953\n",
      "1069 1029 TCGA-CR-6467 TCGA-CR-6467\n",
      "1070 706 TCGA-CV-6938 TCGA-CV-6938\n",
      "1071 929 TCGA-C9-A480 TCGA-C9-A480\n",
      "1072 1064 TCGA-UF-A7JO TCGA-UF-A7JO\n",
      "1073 735 TCGA-CV-6961 TCGA-CV-6961\n",
      "1074 681 TCGA-IQ-A6SG TCGA-IQ-A6SG\n",
      "1075 925 TCGA-CV-7434 TCGA-CV-7434\n",
      "1076 860 TCGA-F7-A50J TCGA-F7-A50J\n",
      "1077 855 TCGA-CR-7386 TCGA-CR-7386\n",
      "1078 933 TCGA-RS-A6TO TCGA-RS-A6TO\n",
      "1079 731 TCGA-CR-7394 TCGA-CR-7394\n",
      "1080 1063 TCGA-CV-7440 TCGA-CV-7440\n",
      "1081 949 TCGA-CR-6481 TCGA-CR-6481\n",
      "1082 641 TCGA-CV-A6JO TCGA-CV-A6JO\n",
      "1083 959 TCGA-CN-6021 TCGA-CN-6021\n",
      "1084 572 TCGA-CV-7263 TCGA-CV-7263\n",
      "1085 602 TCGA-CV-7099 TCGA-CV-7099\n",
      "1086 815 TCGA-CR-5248 TCGA-CR-5248\n",
      "1087 1071 TCGA-CN-A49C TCGA-CN-A49C\n",
      "1088 665 TCGA-CV-A6JT TCGA-CV-A6JT\n",
      "1089 919 TCGA-CR-7397 TCGA-CR-7397\n",
      "1090 700 TCGA-CQ-A4CA TCGA-CQ-A4CA\n",
      "1091 643 TCGA-CV-6954 TCGA-CV-6954\n",
      "1092 926 TCGA-HD-7832 TCGA-HD-7832\n",
      "1093 1009 TCGA-CN-6992 TCGA-CN-6992\n",
      "1094 704 TCGA-CV-7177 TCGA-CV-7177\n",
      "1095 1066 TCGA-IQ-A61K TCGA-IQ-A61K\n",
      "1096 942 TCGA-WA-A7GZ TCGA-WA-A7GZ\n",
      "1098 739 TCGA-CV-6937 TCGA-CV-6937\n",
      "1099 735 TCGA-CV-6961 TCGA-CV-6961\n",
      "1100 838 TCGA-CV-7248 TCGA-CV-7248\n",
      "1101 928 TCGA-BA-A8YP TCGA-BA-A8YP\n",
      "1102 667 TCGA-P3-A6SW TCGA-P3-A6SW\n",
      "1103 625 TCGA-HD-A633 TCGA-HD-A633\n",
      "1104 643 TCGA-CV-6954 TCGA-CV-6954\n",
      "1105 1003 TCGA-BA-A6DA TCGA-BA-A6DA\n",
      "1106 828 TCGA-CN-A63W TCGA-CN-A63W\n",
      "1107 911 TCGA-CV-6962 TCGA-CV-6962\n",
      "1108 780 TCGA-CV-7250 TCGA-CV-7250\n",
      "1109 819 TCGA-CN-4728 TCGA-CN-4728\n",
      "1110 956 TCGA-CV-7432 TCGA-CV-7432\n",
      "1111 891 TCGA-BA-A6DE TCGA-BA-A6DE\n",
      "1112 791 TCGA-CV-7089 TCGA-CV-7089\n",
      "1113 1054 TCGA-CN-A63U TCGA-CN-A63U\n",
      "1114 586 TCGA-BB-4225 TCGA-BB-4225\n",
      "1115 687 TCGA-CQ-7072 TCGA-CQ-7072\n",
      "1116 604 TCGA-CN-6011 TCGA-CN-6011\n",
      "1117 657 TCGA-CN-4731 TCGA-CN-4731\n",
      "1118 944 TCGA-UF-A7JF TCGA-UF-A7JF\n",
      "1119 1004 TCGA-CR-6482 TCGA-CR-6482\n",
      "1120 621 TCGA-CV-7411 TCGA-CV-7411\n",
      "1121 968 TCGA-CR-7365 TCGA-CR-7365\n",
      "1122 578 TCGA-CV-6945 TCGA-CV-6945\n",
      "1123 897 TCGA-CV-7247 TCGA-CV-7247\n",
      "1124 943 TCGA-CR-6480 TCGA-CR-6480\n",
      "1125 884 TCGA-CQ-7065 TCGA-CQ-7065\n",
      "1126 964 TCGA-CV-6950 TCGA-CV-6950\n",
      "1127 852 TCGA-CN-6998 TCGA-CN-6998\n",
      "1128 705 TCGA-CN-4727 TCGA-CN-4727\n",
      "1129 1058 TCGA-CR-6484 TCGA-CR-6484\n",
      "1130 1016 TCGA-CN-6997 TCGA-CN-6997\n",
      "1132 582 TCGA-BA-4075 TCGA-BA-4075\n",
      "1133 937 TCGA-CV-7414 TCGA-CV-7414\n",
      "1134 745 TCGA-CV-7416 TCGA-CV-7416\n",
      "1135 725 TCGA-CV-7178 TCGA-CV-7178\n",
      "1136 1034 TCGA-UF-A719 TCGA-UF-A719\n",
      "1137 709 TCGA-CN-4725 TCGA-CN-4725\n",
      "1138 999 TCGA-BB-A6UM TCGA-BB-A6UM\n",
      "1139 759 TCGA-P3-A6T7 TCGA-P3-A6T7\n",
      "1140 851 TCGA-CV-7252 TCGA-CV-7252\n",
      "1141 736 TCGA-CR-6491 TCGA-CR-6491\n",
      "1142 635 TCGA-CQ-A4CB TCGA-CQ-A4CB\n",
      "1143 782 TCGA-CQ-7071 TCGA-CQ-7071\n",
      "1144 984 TCGA-QK-A6VB TCGA-QK-A6VB\n",
      "1145 593 TCGA-CQ-A4CH TCGA-CQ-A4CH\n",
      "1146 729 TCGA-CV-7406 TCGA-CV-7406\n",
      "1147 617 TCGA-CN-A49B TCGA-CN-A49B\n",
      "1148 565 TCGA-CV-7437 TCGA-CV-7437\n",
      "1149 743 TCGA-CR-7385 TCGA-CR-7385\n",
      "1150 656 TCGA-CR-7392 TCGA-CR-7392\n",
      "1151 940 TCGA-CV-5970 TCGA-CV-5970\n",
      "1152 1067 TCGA-F7-A61W TCGA-F7-A61W\n",
      "1153 963 TCGA-QK-A6VC TCGA-QK-A6VC\n",
      "1154 883 TCGA-QK-A6IG TCGA-QK-A6IG\n",
      "1155 911 TCGA-CV-6962 TCGA-CV-6962\n",
      "1156 956 TCGA-CV-7432 TCGA-CV-7432\n",
      "1157 765 TCGA-BA-A6DD TCGA-BA-A6DD\n",
      "1158 820 TCGA-IQ-A61J TCGA-IQ-A61J\n",
      "1159 881 TCGA-CV-7245 TCGA-CV-7245\n",
      "1160 946 TCGA-CV-7102 TCGA-CV-7102\n",
      "1161 951 TCGA-F7-7848 TCGA-F7-7848\n",
      "1162 816 TCGA-CN-6996 TCGA-CN-6996\n",
      "1163 1068 TCGA-D6-A4ZB TCGA-D6-A4ZB\n",
      "1164 906 TCGA-CR-6473 TCGA-CR-6473\n",
      "1165 841 TCGA-KU-A6H8 TCGA-KU-A6H8\n",
      "1166 871 TCGA-CV-A468 TCGA-CV-A468\n",
      "1167 623 TCGA-CN-5373 TCGA-CN-5373\n",
      "1168 797 TCGA-T2-A6X2 TCGA-T2-A6X2\n",
      "1169 912 TCGA-BA-6872 TCGA-BA-6872\n",
      "1170 856 TCGA-DQ-5629 TCGA-DQ-5629\n",
      "1171 910 TCGA-KU-A66T TCGA-KU-A66T\n",
      "1172 902 TCGA-P3-A6T6 TCGA-P3-A6T6\n",
      "1173 648 TCGA-D6-6827 TCGA-D6-6827\n",
      "1174 751 TCGA-P3-A6T4 TCGA-P3-A6T4\n",
      "1175 986 TCGA-CV-6955 TCGA-CV-6955\n",
      "1176 923 TCGA-CV-7255 TCGA-CV-7255\n",
      "1177 622 TCGA-CQ-6221 TCGA-CQ-6221\n",
      "1178 605 TCGA-CV-6956 TCGA-CV-6956\n",
      "1180 630 TCGA-CV-7407 TCGA-CV-7407\n",
      "1181 879 TCGA-CV-7235 TCGA-CV-7235\n",
      "1182 658 TCGA-D6-8568 TCGA-D6-8568\n",
      "1183 808 TCGA-P3-A5QF TCGA-P3-A5QF\n",
      "1184 732 TCGA-CQ-5331 TCGA-CQ-5331\n",
      "1185 997 TCGA-CV-7180 TCGA-CV-7180\n",
      "1186 907 TCGA-CN-A63T TCGA-CN-A63T\n",
      "1188 675 TCGA-WA-A7H4 TCGA-WA-A7H4\n",
      "1189 770 TCGA-CN-5365 TCGA-CN-5365\n",
      "1190 710 TCGA-CV-A464 TCGA-CV-A464\n",
      "1191 900 TCGA-CV-6941 TCGA-CV-6941\n",
      "1192 609 TCGA-QK-AA3K TCGA-QK-AA3K\n",
      "1193 1052 TCGA-CR-7367 TCGA-CR-7367\n",
      "1194 989 TCGA-F7-A623 TCGA-F7-A623\n",
      "1195 1035 TCGA-CN-6988 TCGA-CN-6988\n",
      "1196 585 TCGA-UF-A7JH TCGA-UF-A7JH\n",
      "1197 974 TCGA-QK-A6IF TCGA-QK-A6IF\n",
      "1198 1002 TCGA-QK-A652 TCGA-QK-A652\n",
      "1199 807 TCGA-CN-A6UY TCGA-CN-A6UY\n",
      "1200 996 TCGA-CN-4735 TCGA-CN-4735\n",
      "1201 1046 TCGA-CR-7364 TCGA-CR-7364\n",
      "1202 878 TCGA-UF-A7J9 TCGA-UF-A7J9\n",
      "1203 783 TCGA-MZ-A5BI TCGA-MZ-A5BI\n",
      "1204 950 TCGA-QK-A64Z TCGA-QK-A64Z\n",
      "1205 889 TCGA-CR-7389 TCGA-CR-7389\n",
      "1206 611 TCGA-CV-7424 TCGA-CV-7424\n",
      "1207 636 TCGA-CV-6943 TCGA-CV-6943\n",
      "1208 767 TCGA-CV-6936 TCGA-CV-6936\n",
      "1209 746 TCGA-UP-A6WW TCGA-UP-A6WW\n",
      "1210 654 TCGA-P3-A5QA TCGA-P3-A5QA\n",
      "1211 624 TCGA-CN-5366 TCGA-CN-5366\n",
      "1212 575 TCGA-CV-6960 TCGA-CV-6960\n",
      "1213 1057 TCGA-CN-4739 TCGA-CN-4739\n",
      "1214 632 TCGA-CQ-5327 TCGA-CQ-5327\n",
      "1215 685 TCGA-CN-A6V1 TCGA-CN-A6V1\n",
      "1216 728 TCGA-CN-4734 TCGA-CN-4734\n",
      "1217 913 TCGA-CV-A6JY TCGA-CV-A6JY\n",
      "1218 831 TCGA-CN-6989 TCGA-CN-6989\n",
      "1219 727 TCGA-IQ-7632 TCGA-IQ-7632\n",
      "1220 683 TCGA-H7-8502 TCGA-H7-8502\n",
      "1221 785 TCGA-DQ-5625 TCGA-DQ-5625\n",
      "1222 987 TCGA-CV-7438 TCGA-CV-7438\n",
      "1223 631 TCGA-CQ-7068 TCGA-CQ-7068\n",
      "1224 799 TCGA-MT-A67D TCGA-MT-A67D\n",
      "1225 626 TCGA-CQ-5329 TCGA-CQ-5329\n",
      "1226 1017 TCGA-CN-5363 TCGA-CN-5363\n",
      "1227 761 TCGA-D6-6516 TCGA-D6-6516\n",
      "1228 754 TCGA-CV-A45T TCGA-CV-A45T\n",
      "1229 744 TCGA-BA-4078 TCGA-BA-4078\n",
      "1230 952 TCGA-IQ-A6SH TCGA-IQ-A6SH\n",
      "1231 1011 TCGA-CV-A6JZ TCGA-CV-A6JZ\n",
      "1232 970 TCGA-CV-7238 TCGA-CV-7238\n",
      "1233 962 TCGA-F7-A620 TCGA-F7-A620\n",
      "1234 945 TCGA-CN-5364 TCGA-CN-5364\n",
      "1235 597 TCGA-CN-5367 TCGA-CN-5367\n",
      "1236 955 TCGA-P3-A6T8 TCGA-P3-A6T8\n",
      "1237 941 TCGA-BB-8596 TCGA-BB-8596\n",
      "1238 786 TCGA-CV-5966 TCGA-CV-5966\n",
      "1239 972 TCGA-CN-4738 TCGA-CN-4738\n",
      "1240 694 TCGA-CN-5361 TCGA-CN-5361\n",
      "1241 1043 TCGA-BA-A6DJ TCGA-BA-A6DJ\n",
      "1242 1021 TCGA-CV-A45V TCGA-CV-A45V\n",
      "1243 1056 TCGA-D6-6824 TCGA-D6-6824\n",
      "1244 979 TCGA-DQ-7591 TCGA-DQ-7591\n",
      "1245 576 TCGA-P3-A6T2 TCGA-P3-A6T2\n",
      "1246 729 TCGA-CV-7406 TCGA-CV-7406\n",
      "1247 674 TCGA-BA-A6DB TCGA-BA-A6DB\n",
      "1248 865 TCGA-CV-5430 TCGA-CV-5430\n",
      "1249 1050 TCGA-QK-A8Z8 TCGA-QK-A8Z8\n",
      "1250 714 TCGA-CR-5243 TCGA-CR-5243\n",
      "1251 598 TCGA-CV-6952 TCGA-CV-6952\n",
      "1252 689 TCGA-CQ-5333 TCGA-CQ-5333\n",
      "1253 640 TCGA-CV-7254 TCGA-CV-7254\n",
      "1254 882 TCGA-CV-7425 TCGA-CV-7425\n",
      "1255 724 TCGA-CN-6010 TCGA-CN-6010\n",
      "1256 587 TCGA-H7-A6C5 TCGA-H7-A6C5\n",
      "1257 918 TCGA-CN-4729 TCGA-CN-4729\n",
      "1258 1008 TCGA-BA-6869 TCGA-BA-6869\n",
      "1259 920 TCGA-H7-A76A TCGA-H7-A76A\n",
      "1260 843 TCGA-DQ-7593 TCGA-DQ-7593\n",
      "1261 875 TCGA-CQ-6227 TCGA-CQ-6227\n",
      "1262 698 TCGA-TN-A7HL TCGA-TN-A7HL\n",
      "1263 668 TCGA-F7-8489 TCGA-F7-8489\n",
      "1264 749 TCGA-H7-8501 TCGA-H7-8501\n",
      "1265 679 TCGA-CV-7104 TCGA-CV-7104\n",
      "1267 669 TCGA-BA-5153 TCGA-BA-5153\n",
      "1268 1063 TCGA-CV-7440 TCGA-CV-7440\n",
      "1269 1006 TCGA-BB-4217 TCGA-BB-4217\n",
      "1271 1024 TCGA-CQ-A4CI TCGA-CQ-A4CI\n",
      "1272 892 TCGA-CV-A45Y TCGA-CV-A45Y\n",
      "1273 894 TCGA-MZ-A6I9 TCGA-MZ-A6I9\n",
      "1274 569 TCGA-CR-7388 TCGA-CR-7388\n",
      "1275 673 TCGA-D6-A6EM TCGA-D6-A6EM\n",
      "1276 923 TCGA-CV-7255 TCGA-CV-7255\n",
      "1277 745 TCGA-CV-7416 TCGA-CV-7416\n",
      "1278 985 TCGA-CV-A6JE TCGA-CV-A6JE\n",
      "1279 634 TCGA-QK-AA3J TCGA-QK-AA3J\n",
      "1280 571 TCGA-BA-7269 TCGA-BA-7269\n",
      "1281 898 TCGA-CR-6477 TCGA-CR-6477\n",
      "1282 846 TCGA-CQ-5323 TCGA-CQ-5323\n",
      "1283 796 TCGA-UF-A7JC TCGA-UF-A7JC\n",
      "1284 991 TCGA-HD-7754 TCGA-HD-7754\n",
      "1285 638 TCGA-CV-7410 TCGA-CV-7410\n",
      "1286 803 TCGA-CX-A4AQ TCGA-CX-A4AQ\n",
      "1287 798 TCGA-CV-7103 TCGA-CV-7103\n",
      "1288 767 TCGA-CV-6936 TCGA-CV-6936\n",
      "1289 981 TCGA-CX-7082 TCGA-CX-7082\n",
      "1290 1022 TCGA-HD-A6HZ TCGA-HD-A6HZ\n",
      "1291 671 TCGA-MT-A67G TCGA-MT-A67G\n",
      "1292 722 TCGA-IQ-A61E TCGA-IQ-A61E\n",
      "1293 644 TCGA-BA-4077 TCGA-BA-4077\n",
      "1294 760 TCGA-UF-A7JK TCGA-UF-A7JK\n",
      "1295 590 TCGA-CN-A498 TCGA-CN-A498\n",
      "1296 1000 TCGA-D6-A6ES TCGA-D6-A6ES\n",
      "1297 842 TCGA-CQ-5330 TCGA-CQ-5330\n",
      "1299 711 TCGA-CN-4726 TCGA-CN-4726\n",
      "1300 678 TCGA-CV-A6K2 TCGA-CV-A6K2\n",
      "1301 862 TCGA-BA-6870 TCGA-BA-6870\n",
      "1302 666 TCGA-IQ-A61L TCGA-IQ-A61L\n",
      "1303 986 TCGA-CV-6955 TCGA-CV-6955\n",
      "1304 1049 TCGA-UF-A7JA TCGA-UF-A7JA\n",
      "1305 606 TCGA-CN-4740 TCGA-CN-4740\n",
      "1306 881 TCGA-CV-7245 TCGA-CV-7245\n",
      "1307 792 TCGA-HD-A634 TCGA-HD-A634\n",
      "1308 885 TCGA-RS-A6TP TCGA-RS-A6TP\n",
      "1309 998 TCGA-CN-A6V7 TCGA-CN-A6V7\n",
      "1310 691 TCGA-CV-6959 TCGA-CV-6959\n",
      "1311 1070 TCGA-CV-7421 TCGA-CV-7421\n",
      "1312 1047 TCGA-CR-6478 TCGA-CR-6478\n",
      "1314 627 TCGA-P3-A5Q5 TCGA-P3-A5Q5\n",
      "1315 834 TCGA-CR-6488 TCGA-CR-6488\n",
      "1316 677 TCGA-CN-6020 TCGA-CN-6020\n",
      "1317 747 TCGA-CX-7219 TCGA-CX-7219\n",
      "1318 1061 TCGA-CV-6934 TCGA-CV-6934\n",
      "1319 869 TCGA-BA-5149 TCGA-BA-5149\n",
      "1320 930 TCGA-BA-5557 TCGA-BA-5557\n",
      "1321 931 TCGA-CN-A49A TCGA-CN-A49A\n",
      "1322 823 TCGA-BA-5152 TCGA-BA-5152\n",
      "1323 988 TCGA-CR-7393 TCGA-CR-7393\n",
      "1324 730 TCGA-CV-7100 TCGA-CV-7100\n",
      "1325 588 TCGA-CV-7446 TCGA-CV-7446\n",
      "1326 1031 TCGA-BA-A4IG TCGA-BA-A4IG\n",
      "1327 740 TCGA-MT-A67A TCGA-MT-A67A\n",
      "1328 734 TCGA-BA-6871 TCGA-BA-6871\n",
      "1329 874 TCGA-C9-A47Z TCGA-C9-A47Z\n",
      "1330 1101 TCGA-Q9-A6FW TCGA-Q9-A6FW\n",
      "1331 1132 TCGA-IG-A51D TCGA-IG-A51D\n",
      "1332 1086 TCGA-R6-A6XG TCGA-R6-A6XG\n",
      "1333 1135 TCGA-IG-A3QL TCGA-IG-A3QL\n",
      "1338 1195 TCGA-IG-A8O2 TCGA-IG-A8O2\n",
      "1339 1159 TCGA-JY-A6FB TCGA-JY-A6FB\n",
      "1340 1190 TCGA-IG-A3Y9 TCGA-IG-A3Y9\n",
      "1341 1186 TCGA-V5-A7RE TCGA-V5-A7RE\n",
      "1343 1127 TCGA-IG-A4P3 TCGA-IG-A4P3\n",
      "1345 1104 TCGA-LN-A4A8 TCGA-LN-A4A8\n",
      "1350 1078 TCGA-R6-A6DN TCGA-R6-A6DN\n",
      "1352 1169 TCGA-LN-A5U5 TCGA-LN-A5U5\n",
      "1354 1183 TCGA-LN-A7HV TCGA-LN-A7HV\n",
      "1355 1153 TCGA-LN-A49L TCGA-LN-A49L\n",
      "1356 1091 TCGA-LN-A7HY TCGA-LN-A7HY\n",
      "1358 1076 TCGA-VR-A8EY TCGA-VR-A8EY\n",
      "1361 1175 TCGA-JY-A93E TCGA-JY-A93E\n",
      "1362 1177 TCGA-LN-A4MR TCGA-LN-A4MR\n",
      "1367 1113 TCGA-R6-A8W8 TCGA-R6-A8W8\n",
      "1368 1184 TCGA-VR-AA7B TCGA-VR-AA7B\n",
      "1372 1192 TCGA-XP-A8T8 TCGA-XP-A8T8\n",
      "1373 1074 TCGA-JY-A93D TCGA-JY-A93D\n",
      "1374 1100 TCGA-VR-A8EP TCGA-VR-A8EP\n",
      "1375 1085 TCGA-LN-A8HZ TCGA-LN-A8HZ\n",
      "1378 1121 TCGA-Z6-AAPN TCGA-Z6-AAPN\n",
      "1383 1130 TCGA-VR-AA4G TCGA-VR-AA4G\n",
      "1384 1117 TCGA-R6-A8WC TCGA-R6-A8WC\n",
      "1386 1166 TCGA-R6-A6Y0 TCGA-R6-A6Y0\n",
      "1387 1092 TCGA-LN-A49U TCGA-LN-A49U\n",
      "1388 1197 TCGA-IG-A625 TCGA-IG-A625\n",
      "1390 1160 TCGA-IG-A4QT TCGA-IG-A4QT\n",
      "1391 1170 TCGA-R6-A6DQ TCGA-R6-A6DQ\n",
      "1392 1136 TCGA-S8-A6BV TCGA-S8-A6BV\n",
      "1394 1124 TCGA-V5-AASX TCGA-V5-AASX\n",
      "1395 1134 TCGA-XP-A8T6 TCGA-XP-A8T6\n",
      "1396 1128 TCGA-XP-A8T7 TCGA-XP-A8T7\n",
      "1402 1186 TCGA-V5-A7RE TCGA-V5-A7RE\n",
      "1403 1112 TCGA-IG-A50L TCGA-IG-A50L\n",
      "1405 1119 TCGA-VR-A8EQ TCGA-VR-A8EQ\n",
      "1406 1182 TCGA-LN-A5U7 TCGA-LN-A5U7\n",
      "1407 1103 TCGA-M9-A5M8 TCGA-M9-A5M8\n",
      "1409 1146 TCGA-Z6-A9VB TCGA-Z6-A9VB\n",
      "1411 1154 TCGA-JY-A6FH TCGA-JY-A6FH\n",
      "1412 1158 TCGA-L5-A43E TCGA-L5-A43E\n",
      "1417 1152 TCGA-VR-A8ER TCGA-VR-A8ER\n",
      "1418 1141 TCGA-JY-A6F8 TCGA-JY-A6F8\n",
      "1419 1075 TCGA-R6-A8WG TCGA-R6-A8WG\n",
      "1420 1149 TCGA-JY-A6FA TCGA-JY-A6FA\n",
      "1421 1109 TCGA-R6-A6L4 TCGA-R6-A6L4\n",
      "1422 1161 TCGA-Z6-A8JD TCGA-Z6-A8JD\n",
      "1424 1179 TCGA-IG-A6QS TCGA-IG-A6QS\n",
      "1425 1144 TCGA-IC-A6RE TCGA-IC-A6RE\n",
      "1433 1142 TCGA-LN-A49X TCGA-LN-A49X\n",
      "1434 1111 TCGA-R6-A6L6 TCGA-R6-A6L6\n",
      "1436 1140 TCGA-IG-A7DP TCGA-IG-A7DP\n",
      "1439 1138 TCGA-LN-A4MQ TCGA-LN-A4MQ\n",
      "1443 1123 TCGA-LN-A8I0 TCGA-LN-A8I0\n",
      "1445 1096 TCGA-L7-A56G TCGA-L7-A56G\n",
      "1446 1126 TCGA-IG-A3YB TCGA-IG-A3YB\n",
      "1447 1118 TCGA-V5-A7RC TCGA-V5-A7RC\n",
      "1449 1172 TCGA-LN-A9FR TCGA-LN-A9FR\n",
      "1450 1155 TCGA-V5-AASW TCGA-V5-AASW\n",
      "1452 1181 TCGA-VR-A8Q7 TCGA-VR-A8Q7\n",
      "1453 1102 TCGA-IG-A3I8 TCGA-IG-A3I8\n",
      "1456 1084 TCGA-VR-A8EW TCGA-VR-A8EW\n",
      "1458 1171 TCGA-R6-A8W5 TCGA-R6-A8W5\n",
      "1459 1137 TCGA-R6-A6XQ TCGA-R6-A6XQ\n",
      "1460 1090 TCGA-LN-A49N TCGA-LN-A49N\n",
      "1461 1107 TCGA-VR-AA7I TCGA-VR-AA7I\n",
      "1464 1095 TCGA-IG-A5B8 TCGA-IG-A5B8\n",
      "1467 1094 TCGA-LN-A4A2 TCGA-LN-A4A2\n",
      "1468 1165 TCGA-LN-A49S TCGA-LN-A49S\n",
      "1471 1180 TCGA-IG-A5S3 TCGA-IG-A5S3\n",
      "1472 1099 TCGA-IG-A3YA TCGA-IG-A3YA\n",
      "1474 1194 TCGA-LN-A49V TCGA-LN-A49V\n",
      "1475 1143 TCGA-IC-A6RF TCGA-IC-A6RF\n",
      "1476 1093 TCGA-LN-A4A4 TCGA-LN-A4A4\n",
      "1478 1139 TCGA-LN-A9FO TCGA-LN-A9FO\n",
      "1479 1196 TCGA-LN-A8I1 TCGA-LN-A8I1\n",
      "1480 1173 TCGA-LN-A49Y TCGA-LN-A49Y\n",
      "1481 1089 TCGA-JY-A939 TCGA-JY-A939\n",
      "1482 1088 TCGA-IG-A97H TCGA-IG-A97H\n",
      "1484 1187 TCGA-IG-A4QS TCGA-IG-A4QS\n",
      "1486 1167 TCGA-VR-A8EO TCGA-VR-A8EO\n",
      "1487 1102 TCGA-IG-A3I8 TCGA-IG-A3I8\n",
      "1488 1188 TCGA-LN-A9FQ TCGA-LN-A9FQ\n",
      "1490 1176 TCGA-LN-A49O TCGA-LN-A49O\n",
      "1491 1082 TCGA-VR-A8EZ TCGA-VR-A8EZ\n",
      "1493 1144 TCGA-IC-A6RE TCGA-IC-A6RE\n",
      "1496 1110 TCGA-R6-A6KZ TCGA-R6-A6KZ\n",
      "1497 1098 TCGA-VR-AA4D TCGA-VR-AA4D\n",
      "1498 1162 TCGA-ZR-A9CJ TCGA-ZR-A9CJ\n",
      "1499 1151 TCGA-Q9-A6FU TCGA-Q9-A6FU\n",
      "1501 1143 TCGA-IC-A6RF TCGA-IC-A6RF\n",
      "1503 1125 TCGA-IG-A97I TCGA-IG-A97I\n",
      "1505 1191 TCGA-VR-AA7D TCGA-VR-AA7D\n",
      "1508 1077 TCGA-LN-A4A3 TCGA-LN-A4A3\n",
      "1509 1115 TCGA-LN-A7HW TCGA-LN-A7HW\n",
      "1511 1081 TCGA-LN-A4A6 TCGA-LN-A4A6\n",
      "1512 1189 TCGA-LN-A4A1 TCGA-LN-A4A1\n",
      "1516 1174 TCGA-L7-A6VZ TCGA-L7-A6VZ\n",
      "1517 1087 TCGA-VR-A8ET TCGA-VR-A8ET\n",
      "1519 1116 TCGA-LN-A7HZ TCGA-LN-A7HZ\n",
      "1520 1145 TCGA-RE-A7BO TCGA-RE-A7BO\n",
      "1522 1129 TCGA-LN-A49P TCGA-LN-A49P\n",
      "1523 1193 TCGA-LN-A4A9 TCGA-LN-A4A9\n",
      "1526 1147 TCGA-V5-A7RB TCGA-V5-A7RB\n",
      "1527 1158 TCGA-L5-A43E TCGA-L5-A43E\n",
      "1532 1072 TCGA-LN-A9FP TCGA-LN-A9FP\n",
      "1534 1114 TCGA-S8-A6BW TCGA-S8-A6BW\n",
      "1540 1105 TCGA-LN-A49W TCGA-LN-A49W\n",
      "1541 1148 TCGA-LN-A4A5 TCGA-LN-A4A5\n",
      "1542 1150 TCGA-R6-A6Y2 TCGA-R6-A6Y2\n",
      "1544 1185 TCGA-LN-A49K TCGA-LN-A49K\n",
      "1549 1156 TCGA-KH-A6WC TCGA-KH-A6WC\n",
      "1550 1083 TCGA-IG-A3YC TCGA-IG-A3YC\n",
      "1551 1164 TCGA-JY-A938 TCGA-JY-A938\n",
      "1552 1131 TCGA-LN-A49M TCGA-LN-A49M\n",
      "1553 1163 TCGA-LN-A49R TCGA-LN-A49R\n",
      "1554 1120 TCGA-Z6-A8JE TCGA-Z6-A8JE\n",
      "1555 1079 TCGA-VR-A8EX TCGA-VR-A8EX\n",
      "1558 1178 TCGA-LN-A7HX TCGA-LN-A7HX\n",
      "1559 1108 TCGA-VR-A8EU TCGA-VR-A8EU\n",
      "1561 1106 TCGA-LN-A5U6 TCGA-LN-A5U6\n",
      "1563 1157 TCGA-JY-A6FD TCGA-JY-A6FD\n",
      "1564 1133 TCGA-JY-A93F TCGA-JY-A93F\n",
      "1570 1122 TCGA-JY-A6FE TCGA-JY-A6FE\n",
      "1571 1073 TCGA-JY-A6FG TCGA-JY-A6FG\n",
      "1573 1168 TCGA-V5-AASV TCGA-V5-AASV\n",
      "1574 1080 TCGA-JY-A93C TCGA-JY-A93C\n",
      "1575 1097 TCGA-X8-AAAR TCGA-X8-AAAR\n",
      "1577 1124 TCGA-V5-AASX TCGA-V5-AASX\n",
      "1578 1256 TCGA-CG-4466 TCGA-CG-4466\n",
      "1579 1466 TCGA-CD-A48C TCGA-CD-A48C\n",
      "1580 1321 TCGA-CD-A4MJ TCGA-CD-A4MJ\n",
      "1581 1376 TCGA-VQ-A8E3 TCGA-VQ-A8E3\n",
      "1582 1567 TCGA-VQ-A94O TCGA-VQ-A94O\n",
      "1584 1304 TCGA-VQ-A8PS TCGA-VQ-A8PS\n",
      "1585 1268 TCGA-D7-A4Z0 TCGA-D7-A4Z0\n",
      "1587 1493 TCGA-HU-A4G6 TCGA-HU-A4G6\n",
      "1588 1230 TCGA-CD-A4MG TCGA-CD-A4MG\n",
      "1589 1488 TCGA-CG-4305 TCGA-CG-4305\n",
      "1591 1574 TCGA-D7-A6EZ TCGA-D7-A6EZ\n",
      "1592 1207 TCGA-D7-6518 TCGA-D7-6518\n",
      "1594 1369 TCGA-CG-4441 TCGA-CG-4441\n",
      "1595 1507 TCGA-F1-A448 TCGA-F1-A448\n",
      "1596 1432 TCGA-BR-8058 TCGA-BR-8058\n",
      "1597 1555 TCGA-BR-A4CQ TCGA-BR-A4CQ\n",
      "1598 1358 TCGA-HU-A4GT TCGA-HU-A4GT\n",
      "1599 1234 TCGA-VQ-A92D TCGA-VQ-A92D\n",
      "1600 1227 TCGA-RD-A8N1 TCGA-RD-A8N1\n",
      "1601 1538 TCGA-D7-6525 TCGA-D7-6525\n",
      "1602 1203 TCGA-BR-6802 TCGA-BR-6802\n",
      "1603 1551 TCGA-BR-6706 TCGA-BR-6706\n",
      "1604 1544 TCGA-IN-AB1X TCGA-IN-AB1X\n",
      "1605 1413 TCGA-HF-7131 TCGA-HF-7131\n",
      "1606 1484 TCGA-IN-A7NR TCGA-IN-A7NR\n",
      "1610 1591 TCGA-VQ-A8PU TCGA-VQ-A8PU\n",
      "1611 1291 TCGA-BR-6709 TCGA-BR-6709\n",
      "1614 1244 TCGA-D7-A748 TCGA-D7-A748\n",
      "1616 1264 TCGA-FP-A4BF TCGA-FP-A4BF\n",
      "1617 1278 TCGA-BR-7851 TCGA-BR-7851\n",
      "1618 1345 TCGA-HU-8245 TCGA-HU-8245\n",
      "1619 1588 TCGA-VQ-A91Z TCGA-VQ-A91Z\n",
      "1621 1524 TCGA-CD-5800 TCGA-CD-5800\n",
      "1622 1395 TCGA-BR-7703 TCGA-BR-7703\n",
      "1623 1519 TCGA-FP-8099 TCGA-FP-8099\n",
      "1624 1489 TCGA-CD-8533 TCGA-CD-8533\n",
      "1625 1265 TCGA-KB-A93G TCGA-KB-A93G\n",
      "1626 1200 TCGA-BR-8367 TCGA-BR-8367\n",
      "1628 1267 TCGA-VQ-A91K TCGA-VQ-A91K\n",
      "1629 1487 TCGA-BR-A4CR TCGA-BR-A4CR\n",
      "1630 1199 TCGA-CG-4460 TCGA-CG-4460\n",
      "1631 1409 TCGA-VQ-A94P TCGA-VQ-A94P\n",
      "1632 1363 TCGA-BR-6565 TCGA-BR-6565\n",
      "1634 1456 TCGA-VQ-AA6J TCGA-VQ-AA6J\n",
      "1635 1387 TCGA-BR-8364 TCGA-BR-8364\n",
      "1636 1422 TCGA-FP-7735 TCGA-FP-7735\n",
      "1639 1275 TCGA-HU-8244 TCGA-HU-8244\n",
      "1640 1283 TCGA-D7-6520 TCGA-D7-6520\n",
      "1642 1247 TCGA-HU-8608 TCGA-HU-8608\n",
      "1643 1573 TCGA-BR-7901 TCGA-BR-7901\n",
      "1647 1563 TCGA-VQ-A91Q TCGA-VQ-A91Q\n",
      "1648 1398 TCGA-BR-6803 TCGA-BR-6803\n",
      "1649 1219 TCGA-VQ-AA6K TCGA-VQ-AA6K\n",
      "1650 1306 TCGA-BR-8592 TCGA-BR-8592\n",
      "1651 1308 TCGA-HU-A4G2 TCGA-HU-A4G2\n",
      "1652 1462 TCGA-VQ-A8PH TCGA-VQ-A8PH\n",
      "1655 1233 TCGA-HU-A4G9 TCGA-HU-A4G9\n",
      "1656 1327 TCGA-CD-8526 TCGA-CD-8526\n",
      "1657 1423 TCGA-BR-8687 TCGA-BR-8687\n",
      "1658 1589 TCGA-HU-A4GP TCGA-HU-A4GP\n",
      "1660 1206 TCGA-BR-6457 TCGA-BR-6457\n",
      "1661 1464 TCGA-F1-6874 TCGA-F1-6874\n",
      "1662 1449 TCGA-HU-8238 TCGA-HU-8238\n",
      "1663 1201 TCGA-RD-A8N0 TCGA-RD-A8N0\n",
      "1665 1580 TCGA-VQ-A91D TCGA-VQ-A91D\n",
      "1666 1259 TCGA-D7-6820 TCGA-D7-6820\n",
      "1667 1418 TCGA-CG-4436 TCGA-CG-4436\n",
      "1668 1425 TCGA-HU-A4HD TCGA-HU-A4HD\n",
      "1669 1361 TCGA-D7-6527 TCGA-D7-6527\n",
      "1670 1508 TCGA-BR-7197 TCGA-BR-7197\n",
      "1671 1271 TCGA-HU-8243 TCGA-HU-8243\n",
      "1672 1463 TCGA-B7-A5TI TCGA-B7-A5TI\n",
      "1673 1312 TCGA-R5-A7ZR TCGA-R5-A7ZR\n",
      "1674 1546 TCGA-CD-5803 TCGA-CD-5803\n",
      "1675 1236 TCGA-CG-4300 TCGA-CG-4300\n",
      "1676 1421 TCGA-CG-4476 TCGA-CG-4476\n",
      "1677 1319 TCGA-D7-A6ET TCGA-D7-A6ET\n",
      "1678 1250 TCGA-BR-8483 TCGA-BR-8483\n",
      "1679 1569 TCGA-HU-A4GJ TCGA-HU-A4GJ\n",
      "1680 1266 TCGA-BR-A4IZ TCGA-BR-A4IZ\n",
      "1682 1342 TCGA-BR-6705 TCGA-BR-6705\n",
      "1683 1408 TCGA-FP-7998 TCGA-FP-7998\n",
      "1684 1412 TCGA-D7-A6F0 TCGA-D7-A6F0\n",
      "1685 1384 TCGA-BR-7704 TCGA-BR-7704\n",
      "1686 1498 TCGA-D7-A6EV TCGA-D7-A6EV\n",
      "1687 1490 TCGA-BR-6456 TCGA-BR-6456\n",
      "1688 1282 TCGA-BR-8690 TCGA-BR-8690\n",
      "1689 1481 TCGA-VQ-A8PK TCGA-VQ-A8PK\n",
      "1690 1461 TCGA-IN-7806 TCGA-IN-7806\n",
      "1691 1485 TCGA-HF-7136 TCGA-HF-7136\n",
      "1692 1441 TCGA-D7-A4YX TCGA-D7-A4YX\n",
      "1693 1277 TCGA-BR-6710 TCGA-BR-6710\n",
      "1695 1344 TCGA-BR-8368 TCGA-BR-8368\n",
      "1696 1350 TCGA-HF-A5NB TCGA-HF-A5NB\n",
      "1697 1255 TCGA-FP-8631 TCGA-FP-8631\n",
      "1698 1497 TCGA-D7-8576 TCGA-D7-8576\n",
      "1699 1461 TCGA-IN-7806 TCGA-IN-7806\n",
      "1701 1375 TCGA-BR-8080 TCGA-BR-8080\n",
      "1704 1440 TCGA-HU-8604 TCGA-HU-8604\n",
      "1705 1365 TCGA-CG-5716 TCGA-CG-5716\n",
      "1706 1559 TCGA-RD-A7BT TCGA-RD-A7BT\n",
      "1707 1287 TCGA-CG-5717 TCGA-CG-5717\n",
      "1708 1336 TCGA-VQ-AA6D TCGA-VQ-AA6D\n",
      "1709 1247 TCGA-HU-8608 TCGA-HU-8608\n",
      "1710 1455 TCGA-BR-8360 TCGA-BR-8360\n",
      "1711 1442 TCGA-HU-A4GD TCGA-HU-A4GD\n",
      "1712 1220 TCGA-IN-A6RL TCGA-IN-A6RL\n",
      "1714 1583 TCGA-CD-8528 TCGA-CD-8528\n",
      "1715 1310 TCGA-BR-8679 TCGA-BR-8679\n",
      "1716 1359 TCGA-BR-A4PF TCGA-BR-A4PF\n",
      "1718 1448 TCGA-IN-AB1V TCGA-IN-AB1V\n",
      "1719 1393 TCGA-CG-4469 TCGA-CG-4469\n",
      "1720 1328 TCGA-BR-8384 TCGA-BR-8384\n",
      "1722 1288 TCGA-D7-5578 TCGA-D7-5578\n",
      "1723 1424 TCGA-VQ-A8PF TCGA-VQ-A8PF\n",
      "1724 1541 TCGA-HU-A4HB TCGA-HU-A4HB\n",
      "1726 1431 TCGA-D7-A4YU TCGA-D7-A4YU\n",
      "1727 1444 TCGA-CD-8529 TCGA-CD-8529\n",
      "1728 1329 TCGA-D7-5579 TCGA-D7-5579\n",
      "1729 1388 TCGA-CD-8535 TCGA-CD-8535\n",
      "1730 1506 TCGA-VQ-A8PP TCGA-VQ-A8PP\n",
      "1731 1242 TCGA-IN-8663 TCGA-IN-8663\n",
      "1732 1281 TCGA-VQ-A8P3 TCGA-VQ-A8P3\n",
      "1733 1353 TCGA-RD-A8N5 TCGA-RD-A8N5\n",
      "1734 1301 TCGA-VQ-AA6G TCGA-VQ-AA6G\n",
      "1735 1443 TCGA-VQ-A8DU TCGA-VQ-A8DU\n",
      "1737 1439 TCGA-CD-5802 TCGA-CD-5802\n",
      "1738 1544 TCGA-IN-AB1X TCGA-IN-AB1X\n",
      "1740 1400 TCGA-RD-A8N6 TCGA-RD-A8N6\n",
      "1741 1470 TCGA-HU-A4G3 TCGA-HU-A4G3\n",
      "1742 1514 TCGA-HU-A4H3 TCGA-HU-A4H3\n",
      "1743 1331 TCGA-BR-6564 TCGA-BR-6564\n",
      "1745 1370 TCGA-VQ-A91X TCGA-VQ-A91X\n",
      "1746 1205 TCGA-CD-5813 TCGA-CD-5813\n",
      "1747 1309 TCGA-HU-A4GN TCGA-HU-A4GN\n",
      "1748 1204 TCGA-BR-8291 TCGA-BR-8291\n",
      "1749 1303 TCGA-BR-A4IU TCGA-BR-A4IU\n",
      "1750 1355 TCGA-BR-8366 TCGA-BR-8366\n",
      "1751 1554 TCGA-R5-A804 TCGA-R5-A804\n",
      "1752 1523 TCGA-BR-8686 TCGA-BR-8686\n",
      "1754 1239 TCGA-HU-8249 TCGA-HU-8249\n",
      "1756 1543 TCGA-RD-A7BW TCGA-RD-A7BW\n",
      "1757 1491 TCGA-BR-8683 TCGA-BR-8683\n",
      "1758 1483 TCGA-BR-8382 TCGA-BR-8382\n",
      "1759 1374 TCGA-HU-A4GX TCGA-HU-A4GX\n",
      "1761 1339 TCGA-HU-A4GY TCGA-HU-A4GY\n",
      "1762 1473 TCGA-VQ-A91V TCGA-VQ-A91V\n",
      "1763 1289 TCGA-VQ-A923 TCGA-VQ-A923\n",
      "1764 1537 TCGA-CD-8530 TCGA-CD-8530\n",
      "1765 1242 TCGA-IN-8663 TCGA-IN-8663\n",
      "1766 1385 TCGA-D7-6822 TCGA-D7-6822\n",
      "1767 1516 TCGA-BR-8286 TCGA-BR-8286\n",
      "1768 1253 TCGA-CD-A486 TCGA-CD-A486\n",
      "1769 1317 TCGA-D7-A74B TCGA-D7-A74B\n",
      "1770 1469 TCGA-BR-7716 TCGA-BR-7716\n",
      "1771 1531 TCGA-VQ-AA6F TCGA-VQ-AA6F\n",
      "1772 1232 TCGA-BR-8380 TCGA-BR-8380\n",
      "1773 1394 TCGA-VQ-A8PB TCGA-VQ-A8PB\n",
      "1774 1372 TCGA-VQ-AA6I TCGA-VQ-AA6I\n",
      "1775 1278 TCGA-BR-7851 TCGA-BR-7851\n",
      "1776 1299 TCGA-BR-A4QI TCGA-BR-A4QI\n",
      "1777 1213 TCGA-VQ-AA69 TCGA-VQ-AA69\n",
      "1778 1417 TCGA-BR-8373 TCGA-BR-8373\n",
      "1779 1517 TCGA-D7-5577 TCGA-D7-5577\n",
      "1780 1397 TCGA-BR-8285 TCGA-BR-8285\n",
      "1781 1217 TCGA-VQ-A8DZ TCGA-VQ-A8DZ\n",
      "1782 1575 TCGA-VQ-A8PD TCGA-VQ-A8PD\n",
      "1783 1307 TCGA-B7-A5TJ TCGA-B7-A5TJ\n",
      "1784 1426 TCGA-BR-A4CS TCGA-BR-A4CS\n",
      "1786 1300 TCGA-BR-7715 TCGA-BR-7715\n",
      "1788 1512 TCGA-VQ-A91A TCGA-VQ-A91A\n",
      "1789 1206 TCGA-BR-6457 TCGA-BR-6457\n",
      "1790 1314 TCGA-CD-8534 TCGA-CD-8534\n",
      "1791 1527 TCGA-FP-A9TM TCGA-FP-A9TM\n",
      "1792 1478 TCGA-BR-8589 TCGA-BR-8589\n",
      "1793 1291 TCGA-BR-6709 TCGA-BR-6709\n",
      "1795 1472 TCGA-BR-8295 TCGA-BR-8295\n",
      "1796 1248 TCGA-VQ-A91W TCGA-VQ-A91W\n",
      "1799 1318 TCGA-IN-7808 TCGA-IN-7808\n",
      "1800 1348 TCGA-VQ-A91N TCGA-VQ-A91N\n",
      "1802 1410 TCGA-CG-4440 TCGA-CG-4440\n",
      "1803 1564 TCGA-BR-7722 TCGA-BR-7722\n",
      "1804 1347 TCGA-CD-8525 TCGA-CD-8525\n",
      "1805 1476 TCGA-VQ-AA68 TCGA-VQ-AA68\n",
      "1806 1391 TCGA-FP-7916 TCGA-FP-7916\n",
      "1807 1237 TCGA-KB-A93H TCGA-KB-A93H\n",
      "1808 1405 TCGA-BR-8363 TCGA-BR-8363\n",
      "1809 1399 TCGA-IN-A6RN TCGA-IN-A6RN\n",
      "1810 1406 TCGA-BR-6452 TCGA-BR-6452\n",
      "1811 1252 TCGA-D7-6817 TCGA-D7-6817\n",
      "1813 1428 TCGA-D7-6528 TCGA-D7-6528\n",
      "1814 1222 TCGA-IN-A6RP TCGA-IN-A6RP\n",
      "1817 1285 TCGA-CD-A487 TCGA-CD-A487\n",
      "1818 1354 TCGA-F1-6177 TCGA-F1-6177\n",
      "1819 1221 TCGA-FP-7829 TCGA-FP-7829\n",
      "1820 1470 TCGA-HU-A4G3 TCGA-HU-A4G3\n",
      "1822 1505 TCGA-BR-8487 TCGA-BR-8487\n",
      "1823 1331 TCGA-BR-6564 TCGA-BR-6564\n",
      "1825 1367 TCGA-BR-7957 TCGA-BR-7957\n",
      "1826 1474 TCGA-HU-A4GQ TCGA-HU-A4GQ\n",
      "1827 1379 TCGA-HU-A4H2 TCGA-HU-A4H2\n",
      "1828 1453 TCGA-BR-6566 TCGA-BR-6566\n",
      "1829 1492 TCGA-VQ-A8P8 TCGA-VQ-A8P8\n",
      "1831 1547 TCGA-CG-4465 TCGA-CG-4465\n",
      "1832 1277 TCGA-BR-6710 TCGA-BR-6710\n",
      "1833 1435 TCGA-BR-A4PD TCGA-BR-A4PD\n",
      "1834 1226 TCGA-IN-A6RS TCGA-IN-A6RS\n",
      "1835 1333 TCGA-HU-A4GH TCGA-HU-A4GH\n",
      "1836 1235 TCGA-VQ-A8E7 TCGA-VQ-A8E7\n",
      "1837 1503 TCGA-BR-8059 TCGA-BR-8059\n",
      "1838 1261 TCGA-BR-8588 TCGA-BR-8588\n",
      "1839 1367 TCGA-BR-7957 TCGA-BR-7957\n",
      "1840 1395 TCGA-BR-7703 TCGA-BR-7703\n",
      "1841 1422 TCGA-FP-7735 TCGA-FP-7735\n",
      "1842 1587 TCGA-CG-5718 TCGA-CG-5718\n",
      "1843 1302 TCGA-CD-A4MI TCGA-CD-A4MI\n",
      "1844 1534 TCGA-VQ-A924 TCGA-VQ-A924\n",
      "1847 1254 TCGA-VQ-A8P2 TCGA-VQ-A8P2\n",
      "1848 1556 TCGA-VQ-A91U TCGA-VQ-A91U\n",
      "1850 1371 TCGA-R5-A7O7 TCGA-R5-A7O7\n",
      "1851 1238 TCGA-BR-8284 TCGA-BR-8284\n",
      "1853 1215 TCGA-CD-5804 TCGA-CD-5804\n",
      "1854 1450 TCGA-MX-A5UG TCGA-MX-A5UG\n",
      "1855 1240 TCGA-HF-7133 TCGA-HF-7133\n",
      "1856 1548 TCGA-ZA-A8F6 TCGA-ZA-A8F6\n",
      "1857 1530 TCGA-BR-6852 TCGA-BR-6852\n",
      "1858 1346 TCGA-D7-6519 TCGA-D7-6519\n",
      "1859 1381 TCGA-BR-8362 TCGA-BR-8362\n",
      "1860 1451 TCGA-EQ-5647 TCGA-EQ-5647\n",
      "1861 1568 TCGA-IN-A7NU TCGA-IN-A7NU\n",
      "1862 1532 TCGA-D7-6522 TCGA-D7-6522\n",
      "1863 1420 TCGA-MX-A5UJ TCGA-MX-A5UJ\n",
      "1864 1270 TCGA-D7-8572 TCGA-D7-8572\n",
      "1865 1496 TCGA-RD-A8N2 TCGA-RD-A8N2\n",
      "1866 1533 TCGA-CG-4437 TCGA-CG-4437\n",
      "1867 1471 TCGA-F1-A72C TCGA-F1-A72C\n",
      "1868 1593 TCGA-BR-A453 TCGA-BR-A453\n",
      "1869 1245 TCGA-VQ-A94T TCGA-VQ-A94T\n",
      "1871 1536 TCGA-VQ-A8DV TCGA-VQ-A8DV\n",
      "1872 1590 TCGA-CD-A4MH TCGA-CD-A4MH\n",
      "1873 1338 TCGA-CD-A48A TCGA-CD-A48A\n",
      "1874 1416 TCGA-VQ-A91S TCGA-VQ-A91S\n",
      "1875 1457 TCGA-BR-8486 TCGA-BR-8486\n",
      "1876 1305 TCGA-HU-A4GU TCGA-HU-A4GU\n",
      "1877 1262 TCGA-BR-A4PE TCGA-BR-A4PE\n",
      "1879 1211 TCGA-HU-8602 TCGA-HU-8602\n",
      "1881 1465 TCGA-BR-7717 TCGA-BR-7717\n",
      "1882 1427 TCGA-CG-4449 TCGA-CG-4449\n",
      "1883 1494 TCGA-CD-8536 TCGA-CD-8536\n",
      "1884 1335 TCGA-BR-6458 TCGA-BR-6458\n",
      "1885 1374 TCGA-HU-A4GX TCGA-HU-A4GX\n",
      "1886 1403 TCGA-BR-A4J7 TCGA-BR-A4J7\n",
      "1887 1398 TCGA-BR-6803 TCGA-BR-6803\n",
      "1888 1233 TCGA-HU-A4G9 TCGA-HU-A4G9\n",
      "1889 1592 TCGA-VQ-A925 TCGA-VQ-A925\n",
      "1890 1315 TCGA-VQ-A91E TCGA-VQ-A91E\n",
      "1891 1231 TCGA-BR-8676 TCGA-BR-8676\n",
      "1892 1351 TCGA-EQ-A4SO TCGA-EQ-A4SO\n",
      "1893 1510 TCGA-HU-8610 TCGA-HU-8610\n",
      "1894 1309 TCGA-HU-A4GN TCGA-HU-A4GN\n",
      "1895 1224 TCGA-D7-6521 TCGA-D7-6521\n",
      "1896 1419 TCGA-CD-8524 TCGA-CD-8524\n",
      "1897 1429 TCGA-RD-A7C1 TCGA-RD-A7C1\n",
      "1899 1368 TCGA-R5-A7ZF TCGA-R5-A7ZF\n",
      "1900 1490 TCGA-BR-6456 TCGA-BR-6456\n",
      "1901 1479 TCGA-BR-8289 TCGA-BR-8289\n",
      "1902 1349 TCGA-D7-A6F2 TCGA-D7-A6F2\n",
      "1903 1322 TCGA-KB-A93J TCGA-KB-A93J\n",
      "1905 1343 TCGA-D7-6815 TCGA-D7-6815\n",
      "1907 1241 TCGA-BR-8371 TCGA-BR-8371\n",
      "1908 1373 TCGA-IN-A6RR TCGA-IN-A6RR\n",
      "1910 1458 TCGA-HU-A4GF TCGA-HU-A4GF\n",
      "1911 1572 TCGA-BR-6707 TCGA-BR-6707\n",
      "1912 1486 TCGA-VQ-A922 TCGA-VQ-A922\n",
      "1914 1294 TCGA-IP-7968 TCGA-IP-7968\n",
      "1915 1553 TCGA-RD-A8NB TCGA-RD-A8NB\n",
      "1916 1198 TCGA-RD-A8N4 TCGA-RD-A8N4\n",
      "1918 1446 TCGA-CG-4438 TCGA-CG-4438\n",
      "1920 1525 TCGA-VQ-A8P5 TCGA-VQ-A8P5\n",
      "1921 1453 TCGA-BR-6566 TCGA-BR-6566\n",
      "1922 1246 TCGA-CD-8527 TCGA-CD-8527\n",
      "1923 1324 TCGA-VQ-A94U TCGA-VQ-A94U\n",
      "1924 1323 TCGA-BR-6563 TCGA-BR-6563\n",
      "1925 1585 TCGA-KB-A6F5 TCGA-KB-A6F5\n",
      "1926 1316 TCGA-IN-8462 TCGA-IN-8462\n",
      "1927 1551 TCGA-BR-6706 TCGA-BR-6706\n",
      "1928 1451 TCGA-EQ-5647 TCGA-EQ-5647\n",
      "1930 1545 TCGA-BR-A4J4 TCGA-BR-A4J4\n",
      "1931 1276 TCGA-B7-A5TK TCGA-B7-A5TK\n",
      "1932 1249 TCGA-CG-4462 TCGA-CG-4462\n",
      "1933 1311 TCGA-VQ-A928 TCGA-VQ-A928\n",
      "1934 1382 TCGA-HJ-7597 TCGA-HJ-7597\n",
      "1935 1396 TCGA-VQ-A8DL TCGA-VQ-A8DL\n",
      "1936 1286 TCGA-D7-6526 TCGA-D7-6526\n",
      "1937 1406 TCGA-BR-6452 TCGA-BR-6452\n",
      "1938 1269 TCGA-BR-8484 TCGA-BR-8484\n",
      "1940 1430 TCGA-VQ-A8PX TCGA-VQ-A8PX\n",
      "1941 1465 TCGA-BR-7717 TCGA-BR-7717\n",
      "1942 1333 TCGA-HU-A4GH TCGA-HU-A4GH\n",
      "1944 1522 TCGA-CG-4306 TCGA-CG-4306\n",
      "1945 1214 TCGA-VQ-A8E2 TCGA-VQ-A8E2\n",
      "1946 1482 TCGA-HF-7134 TCGA-HF-7134\n",
      "1947 1221 TCGA-FP-7829 TCGA-FP-7829\n",
      "1949 1539 TCGA-BR-8369 TCGA-BR-8369\n",
      "1950 1589 TCGA-HU-A4GP TCGA-HU-A4GP\n",
      "1951 1576 TCGA-RD-A8MW TCGA-RD-A8MW\n",
      "1952 1228 TCGA-RD-A7BS TCGA-RD-A7BS\n",
      "1953 1502 TCGA-B7-A5TN TCGA-B7-A5TN\n",
      "1955 1378 TCGA-BR-A4J5 TCGA-BR-A4J5\n",
      "1956 1415 TCGA-VQ-A8PY TCGA-VQ-A8PY\n",
      "1957 1325 TCGA-BR-A4J6 TCGA-BR-A4J6\n",
      "1958 1508 TCGA-BR-7197 TCGA-BR-7197\n",
      "1960 1434 TCGA-BR-8078 TCGA-BR-8078\n",
      "1961 1459 TCGA-D7-6524 TCGA-D7-6524\n",
      "1962 1326 TCGA-CG-4442 TCGA-CG-4442\n",
      "1964 1521 TCGA-BR-7196 TCGA-BR-7196\n",
      "1966 1513 TCGA-VQ-A8PC TCGA-VQ-A8PC\n",
      "1967 1577 TCGA-HF-7132 TCGA-HF-7132\n",
      "1968 1549 TCGA-KB-A6F7 TCGA-KB-A6F7\n",
      "1969 1386 TCGA-VQ-A8PJ TCGA-VQ-A8PJ\n",
      "1971 1356 TCGA-BR-A452 TCGA-BR-A452\n",
      "1972 1389 TCGA-BR-8361 TCGA-BR-8361\n",
      "1973 1440 TCGA-HU-8604 TCGA-HU-8604\n",
      "1975 1364 TCGA-BR-A4IV TCGA-BR-A4IV\n",
      "1976 1511 TCGA-D7-8578 TCGA-D7-8578\n",
      "1978 1295 TCGA-3M-AB47 TCGA-3M-AB47\n",
      "1979 1377 TCGA-BR-A44T TCGA-BR-A44T\n",
      "1981 1501 TCGA-D7-A6EY TCGA-D7-A6EY\n",
      "1982 1571 TCGA-CG-4443 TCGA-CG-4443\n",
      "1983 1208 TCGA-SW-A7EA TCGA-SW-A7EA\n",
      "1984 1300 TCGA-BR-7715 TCGA-BR-7715\n",
      "1985 1294 TCGA-IP-7968 TCGA-IP-7968\n",
      "1986 1584 TCGA-D7-8579 TCGA-D7-8579\n",
      "1987 1509 TCGA-BR-A4IY TCGA-BR-A4IY\n",
      "1988 1263 TCGA-D7-A4YT TCGA-D7-A4YT\n",
      "1989 1337 TCGA-IN-A6RJ TCGA-IN-A6RJ\n",
      "1990 1334 TCGA-BR-8081 TCGA-BR-8081\n",
      "1991 1558 TCGA-B7-5818 TCGA-B7-5818\n",
      "1992 1414 TCGA-BR-8060 TCGA-BR-8060\n",
      "1993 1582 TCGA-R5-A7ZE TCGA-R5-A7ZE\n",
      "1995 1518 TCGA-BR-8591 TCGA-BR-8591\n",
      "1996 1433 TCGA-VQ-A8PO TCGA-VQ-A8PO\n",
      "1997 1216 TCGA-VQ-A8PQ TCGA-VQ-A8PQ\n",
      "1998 1557 TCGA-BR-8296 TCGA-BR-8296\n",
      "1999 1366 TCGA-BR-A4J2 TCGA-BR-A4J2\n",
      "2000 1402 TCGA-CG-4475 TCGA-CG-4475\n",
      "2001 1469 TCGA-BR-7716 TCGA-BR-7716\n",
      "2002 1339 TCGA-HU-A4GY TCGA-HU-A4GY\n",
      "2003 1293 TCGA-RD-A8MV TCGA-RD-A8MV\n",
      "2004 1411 TCGA-CD-A489 TCGA-CD-A489\n",
      "2005 1552 TCGA-BR-8677 TCGA-BR-8677\n",
      "2006 1360 TCGA-D7-A747 TCGA-D7-A747\n",
      "2007 1392 TCGA-VQ-A8PT TCGA-VQ-A8PT\n",
      "2010 1401 TCGA-VQ-A8DT TCGA-VQ-A8DT\n",
      "2011 1340 TCGA-VQ-A8E0 TCGA-VQ-A8E0\n",
      "2012 1578 TCGA-BR-A4J1 TCGA-BR-A4J1\n",
      "2014 1223 TCGA-VQ-A94R TCGA-VQ-A94R\n",
      "2015 1468 TCGA-D7-6818 TCGA-D7-6818\n",
      "2016 1380 TCGA-3M-AB46 TCGA-3M-AB46\n",
      "2017 1318 TCGA-IN-7808 TCGA-IN-7808\n",
      "2018 1210 TCGA-D7-A6EX TCGA-D7-A6EX\n",
      "2020 1404 TCGA-BR-7707 TCGA-BR-7707\n",
      "2021 1357 TCGA-ZQ-A9CR TCGA-ZQ-A9CR\n",
      "2022 1586 TCGA-VQ-AA6B TCGA-VQ-AA6B\n",
      "2023 1504 TCGA-CD-8531 TCGA-CD-8531\n",
      "2024 1320 TCGA-CG-4474 TCGA-CG-4474\n",
      "2025 1352 TCGA-D7-A4YY TCGA-D7-A4YY\n",
      "2026 1273 TCGA-HU-A4G8 TCGA-HU-A4G8\n",
      "2027 1467 TCGA-VQ-A91Y TCGA-VQ-A91Y\n",
      "2028 1579 TCGA-CG-4455 TCGA-CG-4455\n",
      "2030 1211 TCGA-HU-8602 TCGA-HU-8602\n",
      "2031 1561 TCGA-D7-8573 TCGA-D7-8573\n",
      "2032 1257 TCGA-R5-A7ZI TCGA-R5-A7ZI\n",
      "2034 1209 TCGA-D7-A74A TCGA-D7-A74A\n",
      "2035 1535 TCGA-D7-8575 TCGA-D7-8575\n",
      "2036 1480 TCGA-VQ-A927 TCGA-VQ-A927\n",
      "2037 1542 TCGA-MX-A666 TCGA-MX-A666\n",
      "2038 1212 TCGA-CG-4301 TCGA-CG-4301\n",
      "2039 1332 TCGA-BR-8485 TCGA-BR-8485\n",
      "2040 1218 TCGA-D7-8570 TCGA-D7-8570\n",
      "2041 1341 TCGA-VQ-AA6A TCGA-VQ-AA6A\n",
      "2042 1454 TCGA-EQ-8122 TCGA-EQ-8122\n",
      "2043 1438 TCGA-IN-A7NT TCGA-IN-A7NT\n",
      "2044 1495 TCGA-BR-8682 TCGA-BR-8682\n",
      "2047 1460 TCGA-SW-A7EB TCGA-SW-A7EB\n",
      "2049 1452 TCGA-D7-A4YV TCGA-D7-A4YV\n",
      "2050 1229 TCGA-VQ-A8PZ TCGA-VQ-A8PZ\n",
      "2051 1290 TCGA-BR-A44U TCGA-BR-A44U\n",
      "2052 1566 TCGA-BR-A4J8 TCGA-BR-A4J8\n",
      "2053 1529 TCGA-IN-A6RO TCGA-IN-A6RO\n",
      "2054 1437 TCGA-BR-8372 TCGA-BR-8372\n",
      "2055 1202 TCGA-BR-8678 TCGA-BR-8678\n",
      "2056 1313 TCGA-BR-8297 TCGA-BR-8297\n",
      "2057 1251 TCGA-HU-A4H8 TCGA-HU-A4H8\n",
      "2058 1335 TCGA-BR-6458 TCGA-BR-6458\n",
      "2060 1243 TCGA-RD-A8N9 TCGA-RD-A8N9\n",
      "2061 1225 TCGA-IN-A6RI TCGA-IN-A6RI\n",
      "2062 1447 TCGA-VQ-A8PE TCGA-VQ-A8PE\n",
      "2063 1570 TCGA-BR-6455 TCGA-BR-6455\n",
      "2064 1526 TCGA-FP-A8CX TCGA-FP-A8CX\n",
      "2065 1565 TCGA-BR-6801 TCGA-BR-6801\n",
      "2066 1362 TCGA-CG-4444 TCGA-CG-4444\n",
      "2067 1203 TCGA-BR-6802 TCGA-BR-6802\n",
      "2068 1510 TCGA-HU-8610 TCGA-HU-8610\n",
      "2069 1390 TCGA-CG-4477 TCGA-CG-4477\n",
      "2070 1530 TCGA-BR-6852 TCGA-BR-6852\n",
      "2072 1298 TCGA-BR-7959 TCGA-BR-7959\n",
      "2073 1297 TCGA-HU-A4GC TCGA-HU-A4GC\n",
      "2074 1279 TCGA-BR-8365 TCGA-BR-8365\n",
      "2075 1475 TCGA-R5-A805 TCGA-R5-A805\n",
      "2076 1445 TCGA-CG-4304 TCGA-CG-4304\n",
      "2077 1520 TCGA-CD-5801 TCGA-CD-5801\n",
      "2078 1540 TCGA-CD-5799 TCGA-CD-5799\n",
      "2079 1296 TCGA-BR-8381 TCGA-BR-8381\n",
      "2080 1581 TCGA-BR-8370 TCGA-BR-8370\n",
      "2081 1258 TCGA-VQ-AA64 TCGA-VQ-AA64\n",
      "2082 1284 TCGA-VQ-A8PM TCGA-VQ-A8PM\n",
      "2083 1499 TCGA-CD-8532 TCGA-CD-8532\n",
      "2084 1351 TCGA-EQ-A4SO TCGA-EQ-A4SO\n",
      "2085 1297 TCGA-HU-A4GC TCGA-HU-A4GC\n",
      "2086 1436 TCGA-BR-8590 TCGA-BR-8590\n",
      "2088 1515 TCGA-CD-5798 TCGA-CD-5798\n",
      "2090 1500 TCGA-BR-A4QM TCGA-BR-A4QM\n",
      "2091 1560 TCGA-BR-A4J9 TCGA-BR-A4J9\n",
      "2093 1330 TCGA-BR-8680 TCGA-BR-8680\n",
      "2095 1407 TCGA-HU-A4H6 TCGA-HU-A4H6\n",
      "2096 1292 TCGA-D7-8574 TCGA-D7-8574\n",
      "2097 1260 TCGA-BR-8077 TCGA-BR-8077\n",
      "2098 1541 TCGA-HU-A4HB TCGA-HU-A4HB\n",
      "2099 1272 TCGA-BR-A4QL TCGA-BR-A4QL\n",
      "2100 1528 TCGA-CG-5719 TCGA-CG-5719\n",
      "2102 1477 TCGA-FP-8211 TCGA-FP-8211\n",
      "2103 1280 TCGA-BR-7958 TCGA-BR-7958\n",
      "2104 1384 TCGA-BR-7704 TCGA-BR-7704\n",
      "2105 1562 TCGA-B7-5816 TCGA-B7-5816\n",
      "2106 1274 TCGA-MX-A663 TCGA-MX-A663\n",
      "2107 1550 TCGA-BR-7723 TCGA-BR-7723\n"
     ]
    }
   ],
   "source": [
    "consisit_sample = []\n",
    "t = 0\n",
    "for i in range (len(wxs_solid_sample_id)):\n",
    "    for j in range(len(wxs_blood_sample_id)):\n",
    "        if wxs_solid_sample_id[i] == wxs_blood_sample_id[j]:\n",
    "            print(i, j, wxs_solid_sample_id[i], wxs_blood_sample_id[j])\n",
    "            t = t + 1\n",
    "            continue"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 76,
   "id": "2632d638",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "1772"
      ]
     },
     "execution_count": 76,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "t"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "7904db83",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "9f105ea4",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 80,
   "id": "d6ce4cbc",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "C:\\Users\\DELL\\AppData\\Local\\Temp\\ipykernel_10220\\1139135178.py:1: DtypeWarning: Columns (3,18,36,54,79,100,128,131,137,141,152,176,182,189,191,193,205,215,216,217,218,219,221,223,227,228,229,231,232,233,247,248,249,285,286,287,288,289,290,291,292,295,297,298,299,300,302,305,306,307,308,309,310,311,312,313,314,315,316,317,318,320,323,324,325,326,327,328,329,330,331,332,333,334,335,336,337,339,340,341,342,343,344,345,346,347,349,350,351) have mixed types. Specify dtype option on import or set low_memory=False.\n",
      "  microdata = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\metadata.WXS.solid.file.csv')\n"
     ]
    },
    {
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       "      <th>case.state_province_country_of_procurement</th>\n",
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       "    <tr>\n",
       "      <th>7776</th>\n",
       "      <td>0267b745-8d59-4b5e-af31-92e48b8a8d4d</td>\n",
       "      <td>PASS</td>\n",
       "      <td>debb0a08-fc14-4476-984c-2932ebf8df19</td>\n",
       "      <td>NaN</td>\n",
       "      <td>3a46c7d8-4d5b-4f2b-9588-6e3d9c994c10</td>\n",
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       "      <td>0267b745-8d59-4b5e-af31-92e48b8a8d4d</td>\n",
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       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7777</th>\n",
       "      <td>e8f839fc-487d-4135-9313-649dc2f66206</td>\n",
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       "      <td>88869cd5-119d-45a7-b920-d4a9da290ca5</td>\n",
       "      <td>NaN</td>\n",
       "      <td>1fc32f8d-8a2f-482e-87b7-3f8aa1a096ed</td>\n",
       "      <td>e8f839fc-487d-4135-9313-649dc2f66206</td>\n",
       "      <td>PASS</td>\n",
       "      <td>ed3bf1dd-50e4-4abf-8e04-bc1a97c493b3</td>\n",
       "      <td>e8f839fc-487d-4135-9313-649dc2f66206</td>\n",
       "      <td>2018-03-20T21:50:04.930953-05:00</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>False</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Stomach Cancer</td>\n",
       "      <td>Locoregional Recurrence</td>\n",
       "      <td>False</td>\n",
       "      <td>NaN</td>\n",
       "      <td>False</td>\n",
       "      <td>wlkp</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7778</th>\n",
       "      <td>cd10686d-b985-4fdc-8073-63dcc9e7a6b1</td>\n",
       "      <td>PASS</td>\n",
       "      <td>c9779aac-e58f-40c2-99bc-d4447b94078a</td>\n",
       "      <td>NaN</td>\n",
       "      <td>7f36c25b-ce41-442d-ba70-69b3cb82473f</td>\n",
       "      <td>cd10686d-b985-4fdc-8073-63dcc9e7a6b1</td>\n",
       "      <td>PASS</td>\n",
       "      <td>5d33895e-a959-4d5e-8850-c49c7fa49a22</td>\n",
       "      <td>cd10686d-b985-4fdc-8073-63dcc9e7a6b1</td>\n",
       "      <td>2018-03-20T23:25:59.394672-05:00</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>True</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Ontario Canada</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7779</th>\n",
       "      <td>e0ed36a9-4d17-4b3d-bec8-5765c9a53a64</td>\n",
       "      <td>PASS</td>\n",
       "      <td>95698d6f-5687-4261-a6f4-30a349f74baf</td>\n",
       "      <td>NaN</td>\n",
       "      <td>d26f7698-e98a-4766-a899-1082d157c0ff</td>\n",
       "      <td>e0ed36a9-4d17-4b3d-bec8-5765c9a53a64</td>\n",
       "      <td>PASS</td>\n",
       "      <td>8cb0144b-be6b-40a1-86a2-708f96d9b615</td>\n",
       "      <td>e0ed36a9-4d17-4b3d-bec8-5765c9a53a64</td>\n",
       "      <td>2018-03-20T23:18:12.143218-05:00</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Germany</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7780</th>\n",
       "      <td>31fe7131-31b4-46e5-a65c-7719193dd73e</td>\n",
       "      <td>PASS</td>\n",
       "      <td>858bf39a-2db7-4488-b0c9-f640934fa7be</td>\n",
       "      <td>NaN</td>\n",
       "      <td>2ca2e65e-0737-4570-be96-699485743a43</td>\n",
       "      <td>31fe7131-31b4-46e5-a65c-7719193dd73e</td>\n",
       "      <td>PASS</td>\n",
       "      <td>7739f659-0e25-4404-ad25-ee52fbbcfd44</td>\n",
       "      <td>31fe7131-31b4-46e5-a65c-7719193dd73e</td>\n",
       "      <td>2018-03-20T22:13:22.311937-05:00</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>False</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Stomach Cancer</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>False</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>7781 rows × 352 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "                                   file_id adapter_content  \\\n",
       "0     22eeeeaf-8aa8-45e6-ace6-b84917c3b402             NaN   \n",
       "1     a191bf4a-e494-4741-963f-04125c2a7d25             NaN   \n",
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       "4     b96e4a5b-ccba-4670-96a2-87b4bde329ea             NaN   \n",
       "...                                    ...             ...   \n",
       "7776  0267b745-8d59-4b5e-af31-92e48b8a8d4d            PASS   \n",
       "7777  e8f839fc-487d-4135-9313-649dc2f66206            PASS   \n",
       "7778  cd10686d-b985-4fdc-8073-63dcc9e7a6b1            PASS   \n",
       "7779  e0ed36a9-4d17-4b3d-bec8-5765c9a53a64            PASS   \n",
       "7780  31fe7131-31b4-46e5-a65c-7719193dd73e            PASS   \n",
       "\n",
       "                                aliquot_id  \\\n",
       "0     4019c219-c51e-479f-8a9d-cfa6816ed696   \n",
       "1     ddfe45b0-0c9b-4b7f-9fb3-17715d85a63d   \n",
       "2     95872778-01c0-48c8-8986-605cb8bc5b40   \n",
       "3     631554d6-fda1-4d51-8fa8-2225a0a0f285   \n",
       "4     07c43104-a2d5-4f74-b22f-166d8364562e   \n",
       "...                                    ...   \n",
       "7776  debb0a08-fc14-4476-984c-2932ebf8df19   \n",
       "7777  88869cd5-119d-45a7-b920-d4a9da290ca5   \n",
       "7778  c9779aac-e58f-40c2-99bc-d4447b94078a   \n",
       "7779  95698d6f-5687-4261-a6f4-30a349f74baf   \n",
       "7780  858bf39a-2db7-4488-b0c9-f640934fa7be   \n",
       "\n",
       "                               analysis.id  \\\n",
       "0     22eeeeaf-8aa8-45e6-ace6-b84917c3b402   \n",
       "1     a191bf4a-e494-4741-963f-04125c2a7d25   \n",
       "2     a27b491f-dfce-4f7b-a18c-8ada5309959c   \n",
       "3     4ca4d097-aba8-4b2e-80ef-1c1b06463366   \n",
       "4     b96e4a5b-ccba-4670-96a2-87b4bde329ea   \n",
       "...                                    ...   \n",
       "7776                                   NaN   \n",
       "7777                                   NaN   \n",
       "7778                                   NaN   \n",
       "7779                                   NaN   \n",
       "7780                                   NaN   \n",
       "\n",
       "                                analyte_id  \\\n",
       "0     7d41e028-e1e3-4c71-8435-7b605c7e50ec   \n",
       "1     6f84142c-a3dd-43cb-8756-b94568b556d2   \n",
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       "4     be7f4154-e50f-4dbe-84c5-e72919d88ab8   \n",
       "...                                    ...   \n",
       "7776  3a46c7d8-4d5b-4f2b-9588-6e3d9c994c10   \n",
       "7777  1fc32f8d-8a2f-482e-87b7-3f8aa1a096ed   \n",
       "7778  7f36c25b-ce41-442d-ba70-69b3cb82473f   \n",
       "7779  d26f7698-e98a-4766-a899-1082d157c0ff   \n",
       "7780  2ca2e65e-0737-4570-be96-699485743a43   \n",
       "\n",
       "                                archive_id basic_statistics  \\\n",
       "0                                      NaN              NaN   \n",
       "1                                      NaN              NaN   \n",
       "2                                      NaN              NaN   \n",
       "3                                      NaN              NaN   \n",
       "4                                      NaN              NaN   \n",
       "...                                    ...              ...   \n",
       "7776  0267b745-8d59-4b5e-af31-92e48b8a8d4d             PASS   \n",
       "7777  e8f839fc-487d-4135-9313-649dc2f66206             PASS   \n",
       "7778  cd10686d-b985-4fdc-8073-63dcc9e7a6b1             PASS   \n",
       "7779  e0ed36a9-4d17-4b3d-bec8-5765c9a53a64             PASS   \n",
       "7780  31fe7131-31b4-46e5-a65c-7719193dd73e             PASS   \n",
       "\n",
       "                                   case_id  \\\n",
       "0     6fa41234-9077-4d05-a295-6820f3bedf5b   \n",
       "1     58facedb-fcb8-4ecf-8338-2bfa4947acef   \n",
       "2     b54865b6-824e-4163-b759-21a6eacc98ce   \n",
       "3     36eaf209-c332-4321-b6aa-51a3368ecd79   \n",
       "4     41658cf8-0de1-4a97-bb60-0f0107c84e00   \n",
       "...                                    ...   \n",
       "7776  16286ebd-6811-4e53-b4d5-82e1e825bc7a   \n",
       "7777  ed3bf1dd-50e4-4abf-8e04-bc1a97c493b3   \n",
       "7778  5d33895e-a959-4d5e-8850-c49c7fa49a22   \n",
       "7779  8cb0144b-be6b-40a1-86a2-708f96d9b615   \n",
       "7780  7739f659-0e25-4404-ad25-ee52fbbcfd44   \n",
       "\n",
       "                                 center_id                  created_datetime  \\\n",
       "0     22eeeeaf-8aa8-45e6-ace6-b84917c3b402                               NaN   \n",
       "1     a191bf4a-e494-4741-963f-04125c2a7d25                               NaN   \n",
       "2     a27b491f-dfce-4f7b-a18c-8ada5309959c                               NaN   \n",
       "3     4ca4d097-aba8-4b2e-80ef-1c1b06463366                               NaN   \n",
       "4     b96e4a5b-ccba-4670-96a2-87b4bde329ea                               NaN   \n",
       "...                                    ...                               ...   \n",
       "7776  0267b745-8d59-4b5e-af31-92e48b8a8d4d  2018-03-20T22:05:07.785911-05:00   \n",
       "7777  e8f839fc-487d-4135-9313-649dc2f66206  2018-03-20T21:50:04.930953-05:00   \n",
       "7778  cd10686d-b985-4fdc-8073-63dcc9e7a6b1  2018-03-20T23:25:59.394672-05:00   \n",
       "7779  e0ed36a9-4d17-4b3d-bec8-5765c9a53a64  2018-03-20T23:18:12.143218-05:00   \n",
       "7780  31fe7131-31b4-46e5-a65c-7719193dd73e  2018-03-20T22:13:22.311937-05:00   \n",
       "\n",
       "      ... case.country_of_birth  case.targeted_molecular_therapy  \\\n",
       "0     ...                   NaN                              NaN   \n",
       "1     ...                   NaN                              NaN   \n",
       "2     ...                   NaN                              NaN   \n",
       "3     ...                   NaN                              NaN   \n",
       "4     ...                   NaN                              NaN   \n",
       "...   ...                   ...                              ...   \n",
       "7776  ...                   NaN                             True   \n",
       "7777  ...                   NaN                            False   \n",
       "7778  ...                   NaN                              NaN   \n",
       "7779  ...                   NaN                              NaN   \n",
       "7780  ...                   NaN                            False   \n",
       "\n",
       "     case.anatomic_neoplasm_subdivision_other case.patient_death_reason  \\\n",
       "0                                         NaN                       NaN   \n",
       "1                                         NaN                       NaN   \n",
       "2                                         NaN                       NaN   \n",
       "3                                         NaN                       NaN   \n",
       "4                                         NaN                       NaN   \n",
       "...                                       ...                       ...   \n",
       "7776                                      NaN                       NaN   \n",
       "7777                                      NaN            Stomach Cancer   \n",
       "7778                                      NaN                       NaN   \n",
       "7779                                      NaN                       NaN   \n",
       "7780                                      NaN            Stomach Cancer   \n",
       "\n",
       "     case.new_neoplasm_event_type  case.antireflux_treatment  \\\n",
       "0                             NaN                        NaN   \n",
       "1                             NaN                        NaN   \n",
       "2                             NaN                        NaN   \n",
       "3                             NaN                        NaN   \n",
       "4                             NaN                        NaN   \n",
       "...                           ...                        ...   \n",
       "7776                          NaN                        NaN   \n",
       "7777      Locoregional Recurrence                      False   \n",
       "7778                          NaN                       True   \n",
       "7779                          NaN                        NaN   \n",
       "7780                          NaN                        NaN   \n",
       "\n",
       "     case.number_of_relatives_with_stomach_cancer  \\\n",
       "0                                             NaN   \n",
       "1                                             NaN   \n",
       "2                                             NaN   \n",
       "3                                             NaN   \n",
       "4                                             NaN   \n",
       "...                                           ...   \n",
       "7776                                          NaN   \n",
       "7777                                          NaN   \n",
       "7778                                          NaN   \n",
       "7779                                          NaN   \n",
       "7780                                          NaN   \n",
       "\n",
       "     case.family_history_of_stomach_cancer  \\\n",
       "0                                      NaN   \n",
       "1                                      NaN   \n",
       "2                                      NaN   \n",
       "3                                      NaN   \n",
       "4                                      NaN   \n",
       "...                                    ...   \n",
       "7776                                 False   \n",
       "7777                                 False   \n",
       "7778                                   NaN   \n",
       "7779                                   NaN   \n",
       "7780                                 False   \n",
       "\n",
       "     case.state_province_country_of_procurement case.isPapillary  \n",
       "0                                           NaN              NaN  \n",
       "1                                           NaN              NaN  \n",
       "2                                           NaN              NaN  \n",
       "3                                           NaN              NaN  \n",
       "4                                           NaN              NaN  \n",
       "...                                         ...              ...  \n",
       "7776                                        NaN              NaN  \n",
       "7777                                       wlkp              NaN  \n",
       "7778                             Ontario Canada              NaN  \n",
       "7779                                    Germany              NaN  \n",
       "7780                                        NaN              NaN  \n",
       "\n",
       "[7781 rows x 352 columns]"
      ]
     },
     "execution_count": 80,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "microdata = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\metadata.WXS.solid.file.csv')\n",
    "microdata"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 96,
   "id": "bebc220c",
   "metadata": {},
   "outputs": [
    {
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       "      <td>c9779aac-e58f-40c2-99bc-d4447b94078a</td>\n",
       "      <td>NaN</td>\n",
       "      <td>7f36c25b-ce41-442d-ba70-69b3cb82473f</td>\n",
       "      <td>cd10686d-b985-4fdc-8073-63dcc9e7a6b1</td>\n",
       "      <td>PASS</td>\n",
       "      <td>5d33895e-a959-4d5e-8850-c49c7fa49a22</td>\n",
       "      <td>cd10686d-b985-4fdc-8073-63dcc9e7a6b1</td>\n",
       "      <td>2018-03-20T23:25:59.394672-05:00</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>True</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Ontario Canada</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7779</th>\n",
       "      <td>e0ed36a9-4d17-4b3d-bec8-5765c9a53a64</td>\n",
       "      <td>PASS</td>\n",
       "      <td>95698d6f-5687-4261-a6f4-30a349f74baf</td>\n",
       "      <td>NaN</td>\n",
       "      <td>d26f7698-e98a-4766-a899-1082d157c0ff</td>\n",
       "      <td>e0ed36a9-4d17-4b3d-bec8-5765c9a53a64</td>\n",
       "      <td>PASS</td>\n",
       "      <td>8cb0144b-be6b-40a1-86a2-708f96d9b615</td>\n",
       "      <td>e0ed36a9-4d17-4b3d-bec8-5765c9a53a64</td>\n",
       "      <td>2018-03-20T23:18:12.143218-05:00</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Germany</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7780</th>\n",
       "      <td>31fe7131-31b4-46e5-a65c-7719193dd73e</td>\n",
       "      <td>PASS</td>\n",
       "      <td>858bf39a-2db7-4488-b0c9-f640934fa7be</td>\n",
       "      <td>NaN</td>\n",
       "      <td>2ca2e65e-0737-4570-be96-699485743a43</td>\n",
       "      <td>31fe7131-31b4-46e5-a65c-7719193dd73e</td>\n",
       "      <td>PASS</td>\n",
       "      <td>7739f659-0e25-4404-ad25-ee52fbbcfd44</td>\n",
       "      <td>31fe7131-31b4-46e5-a65c-7719193dd73e</td>\n",
       "      <td>2018-03-20T22:13:22.311937-05:00</td>\n",
       "      <td>...</td>\n",
       "      <td>NaN</td>\n",
       "      <td>False</td>\n",
       "      <td>NaN</td>\n",
       "      <td>Stomach Cancer</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "      <td>False</td>\n",
       "      <td>NaN</td>\n",
       "      <td>NaN</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>2166 rows × 352 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "                                   file_id adapter_content  \\\n",
       "5615  99084bc3-84ee-4ccc-9c54-1b5a74af410b             NaN   \n",
       "5616  a1feb789-c851-4608-a5c1-382bb432c4c7             NaN   \n",
       "5617  9830e4a0-d8b1-4166-8375-49851288cf1f             NaN   \n",
       "5618  05762233-5294-478d-b462-14b931579f63             NaN   \n",
       "5619  144edb0d-1d38-420e-a1b5-ea974935bacf             NaN   \n",
       "...                                    ...             ...   \n",
       "7776  0267b745-8d59-4b5e-af31-92e48b8a8d4d            PASS   \n",
       "7777  e8f839fc-487d-4135-9313-649dc2f66206            PASS   \n",
       "7778  cd10686d-b985-4fdc-8073-63dcc9e7a6b1            PASS   \n",
       "7779  e0ed36a9-4d17-4b3d-bec8-5765c9a53a64            PASS   \n",
       "7780  31fe7131-31b4-46e5-a65c-7719193dd73e            PASS   \n",
       "\n",
       "                                aliquot_id  \\\n",
       "5615  e58458dc-b614-466b-863d-428b18fd3a64   \n",
       "5616  b27fac46-97c3-4262-b8cb-6e15aa75483a   \n",
       "5617  c612570a-881d-421f-98b9-0e4563133744   \n",
       "5618  f262dded-846f-4deb-8fc3-ef0df814eca4   \n",
       "5619  3505efd5-d2ce-4fcc-9980-5fbf2522af0d   \n",
       "...                                    ...   \n",
       "7776  debb0a08-fc14-4476-984c-2932ebf8df19   \n",
       "7777  88869cd5-119d-45a7-b920-d4a9da290ca5   \n",
       "7778  c9779aac-e58f-40c2-99bc-d4447b94078a   \n",
       "7779  95698d6f-5687-4261-a6f4-30a349f74baf   \n",
       "7780  858bf39a-2db7-4488-b0c9-f640934fa7be   \n",
       "\n",
       "                               analysis.id  \\\n",
       "5615  99084bc3-84ee-4ccc-9c54-1b5a74af410b   \n",
       "5616  a1feb789-c851-4608-a5c1-382bb432c4c7   \n",
       "5617  9830e4a0-d8b1-4166-8375-49851288cf1f   \n",
       "5618  05762233-5294-478d-b462-14b931579f63   \n",
       "5619  144edb0d-1d38-420e-a1b5-ea974935bacf   \n",
       "...                                    ...   \n",
       "7776                                   NaN   \n",
       "7777                                   NaN   \n",
       "7778                                   NaN   \n",
       "7779                                   NaN   \n",
       "7780                                   NaN   \n",
       "\n",
       "                                analyte_id  \\\n",
       "5615  f97ba87d-3b05-4062-8426-5edbad279885   \n",
       "5616  944f27f0-b9a1-4d2f-a4da-7adf39744293   \n",
       "5617  341561d3-6c8d-4c79-929d-8d542b99f533   \n",
       "5618  1c4489df-9204-44dd-9af6-877c999e1949   \n",
       "5619  e0e2072a-3f4f-49ae-8566-2b380bf83e71   \n",
       "...                                    ...   \n",
       "7776  3a46c7d8-4d5b-4f2b-9588-6e3d9c994c10   \n",
       "7777  1fc32f8d-8a2f-482e-87b7-3f8aa1a096ed   \n",
       "7778  7f36c25b-ce41-442d-ba70-69b3cb82473f   \n",
       "7779  d26f7698-e98a-4766-a899-1082d157c0ff   \n",
       "7780  2ca2e65e-0737-4570-be96-699485743a43   \n",
       "\n",
       "                                archive_id basic_statistics  \\\n",
       "5615                                   NaN              NaN   \n",
       "5616                                   NaN              NaN   \n",
       "5617                                   NaN              NaN   \n",
       "5618                                   NaN              NaN   \n",
       "5619                                   NaN              NaN   \n",
       "...                                    ...              ...   \n",
       "7776  0267b745-8d59-4b5e-af31-92e48b8a8d4d             PASS   \n",
       "7777  e8f839fc-487d-4135-9313-649dc2f66206             PASS   \n",
       "7778  cd10686d-b985-4fdc-8073-63dcc9e7a6b1             PASS   \n",
       "7779  e0ed36a9-4d17-4b3d-bec8-5765c9a53a64             PASS   \n",
       "7780  31fe7131-31b4-46e5-a65c-7719193dd73e             PASS   \n",
       "\n",
       "                                   case_id  \\\n",
       "5615  daecea36-b379-46ce-8ae9-a38d22556ce2   \n",
       "5616  a2a71cb0-9dbd-45cc-8867-da84500515e7   \n",
       "5617  1ca3c5e0-32b0-4467-8ec0-ca212e35d2b3   \n",
       "5618  f35e8fef-f61d-4614-b73f-f7e1d0f21f52   \n",
       "5619  6e03b415-84a1-4b91-8717-1a41edd4a255   \n",
       "...                                    ...   \n",
       "7776  16286ebd-6811-4e53-b4d5-82e1e825bc7a   \n",
       "7777  ed3bf1dd-50e4-4abf-8e04-bc1a97c493b3   \n",
       "7778  5d33895e-a959-4d5e-8850-c49c7fa49a22   \n",
       "7779  8cb0144b-be6b-40a1-86a2-708f96d9b615   \n",
       "7780  7739f659-0e25-4404-ad25-ee52fbbcfd44   \n",
       "\n",
       "                                 center_id                  created_datetime  \\\n",
       "5615  99084bc3-84ee-4ccc-9c54-1b5a74af410b                               NaN   \n",
       "5616  a1feb789-c851-4608-a5c1-382bb432c4c7                               NaN   \n",
       "5617  9830e4a0-d8b1-4166-8375-49851288cf1f                               NaN   \n",
       "5618  05762233-5294-478d-b462-14b931579f63                               NaN   \n",
       "5619  144edb0d-1d38-420e-a1b5-ea974935bacf                               NaN   \n",
       "...                                    ...                               ...   \n",
       "7776  0267b745-8d59-4b5e-af31-92e48b8a8d4d  2018-03-20T22:05:07.785911-05:00   \n",
       "7777  e8f839fc-487d-4135-9313-649dc2f66206  2018-03-20T21:50:04.930953-05:00   \n",
       "7778  cd10686d-b985-4fdc-8073-63dcc9e7a6b1  2018-03-20T23:25:59.394672-05:00   \n",
       "7779  e0ed36a9-4d17-4b3d-bec8-5765c9a53a64  2018-03-20T23:18:12.143218-05:00   \n",
       "7780  31fe7131-31b4-46e5-a65c-7719193dd73e  2018-03-20T22:13:22.311937-05:00   \n",
       "\n",
       "      ... case.country_of_birth  case.targeted_molecular_therapy  \\\n",
       "5615  ...                   NaN                              NaN   \n",
       "5616  ...                   NaN                              NaN   \n",
       "5617  ...                   NaN                              NaN   \n",
       "5618  ...                   NaN                              NaN   \n",
       "5619  ...                   NaN                              NaN   \n",
       "...   ...                   ...                              ...   \n",
       "7776  ...                   NaN                             True   \n",
       "7777  ...                   NaN                            False   \n",
       "7778  ...                   NaN                              NaN   \n",
       "7779  ...                   NaN                              NaN   \n",
       "7780  ...                   NaN                            False   \n",
       "\n",
       "     case.anatomic_neoplasm_subdivision_other case.patient_death_reason  \\\n",
       "5615                                      NaN                       NaN   \n",
       "5616                                      NaN                       NaN   \n",
       "5617                                      NaN                       NaN   \n",
       "5618                                      NaN                       NaN   \n",
       "5619                                      NaN                       NaN   \n",
       "...                                       ...                       ...   \n",
       "7776                                      NaN                       NaN   \n",
       "7777                                      NaN            Stomach Cancer   \n",
       "7778                                      NaN                       NaN   \n",
       "7779                                      NaN                       NaN   \n",
       "7780                                      NaN            Stomach Cancer   \n",
       "\n",
       "     case.new_neoplasm_event_type  case.antireflux_treatment  \\\n",
       "5615                          NaN                        NaN   \n",
       "5616                          NaN                      False   \n",
       "5617                          NaN                        NaN   \n",
       "5618                          NaN                       True   \n",
       "5619                          NaN                        NaN   \n",
       "...                           ...                        ...   \n",
       "7776                          NaN                        NaN   \n",
       "7777      Locoregional Recurrence                      False   \n",
       "7778                          NaN                       True   \n",
       "7779                          NaN                        NaN   \n",
       "7780                          NaN                        NaN   \n",
       "\n",
       "     case.number_of_relatives_with_stomach_cancer  \\\n",
       "5615                                          NaN   \n",
       "5616                                          NaN   \n",
       "5617                                          NaN   \n",
       "5618                                          0.0   \n",
       "5619                                          NaN   \n",
       "...                                           ...   \n",
       "7776                                          NaN   \n",
       "7777                                          NaN   \n",
       "7778                                          NaN   \n",
       "7779                                          NaN   \n",
       "7780                                          NaN   \n",
       "\n",
       "     case.family_history_of_stomach_cancer  \\\n",
       "5615                                 False   \n",
       "5616                                   NaN   \n",
       "5617                                 False   \n",
       "5618                                 False   \n",
       "5619                                   NaN   \n",
       "...                                    ...   \n",
       "7776                                 False   \n",
       "7777                                 False   \n",
       "7778                                   NaN   \n",
       "7779                                   NaN   \n",
       "7780                                 False   \n",
       "\n",
       "     case.state_province_country_of_procurement case.isPapillary  \n",
       "5615                                     Russia              NaN  \n",
       "5616                                     Russia              NaN  \n",
       "5617                                     Russia              NaN  \n",
       "5618                            Hamburg/Germany              NaN  \n",
       "5619                                     Russia              NaN  \n",
       "...                                         ...              ...  \n",
       "7776                                        NaN              NaN  \n",
       "7777                                       wlkp              NaN  \n",
       "7778                             Ontario Canada              NaN  \n",
       "7779                                    Germany              NaN  \n",
       "7780                                        NaN              NaN  \n",
       "\n",
       "[2166 rows x 352 columns]"
      ]
     },
     "execution_count": 96,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "microdata.loc[5615:, : ]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 97,
   "id": "c37a06ca",
   "metadata": {},
   "outputs": [],
   "source": [
    "data = microdata.loc[5615:, : ]\n",
    "data.to_csv('D:\\\\TCGA\\\\mbVDiT_data\\\\WXS\\\\solid\\\\stad\\\\metadata.csv', index=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "f1d0955b",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "e97c8fb0",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "db77c79d",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 201,
   "id": "64379b66",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['00b7ee04-b97b-49ee-b27b-13f6fb981fec',\n",
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       " '6e0f43eb-5df4-4378-80a7-48f2d04a76e1',\n",
       " '6e628bb3-03fe-4873-be69-57086f74a63b',\n",
       " '6ef584e3-243a-4204-b9ff-a0466629015c',\n",
       " '6f0e5138-479f-46d6-9549-fb6baeb705c1',\n",
       " '6f6bf08b-e94e-44a2-aba4-25378e74f734',\n",
       " '6f73a640-1eb1-4102-919e-bc84e6e99247',\n",
       " '6fc7b60e-69ca-47b0-9d49-636e3cb50ce8',\n",
       " '7032061a-a3fc-45a9-bac4-b7f98a752612',\n",
       " '70cc8cfa-2e2f-420e-bf14-eef0d453ae11',\n",
       " '70f0c06c-5bb2-413f-bee6-63ad6a1d8bcc',\n",
       " '71a305e1-9881-4971-bae4-6b51799ff43a',\n",
       " '727bda4e-510c-4431-9eec-80a665a102cc',\n",
       " '72864382-7db5-4649-8030-673223be00be',\n",
       " '7438c113-fbbd-479d-9711-b89de23f3b08',\n",
       " ...]"
      ]
     },
     "execution_count": 201,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "sample = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\csvcleaned_file.csv', index_col=0).columns\n",
    "micsample=sample.tolist()\n",
    "micsample"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 229,
   "id": "df1f8c3a",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "C:\\Users\\DELL\\AppData\\Local\\Temp\\ipykernel_10220\\1028369053.py:1: DtypeWarning: Columns (3,16,35,39,40,54,79,80,81,121,161,180) have mixed types. Specify dtype option on import or set low_memory=False.\n",
      "  meta = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\stad\\\\metadata.csv')\n"
     ]
    },
    {
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       " 'b54e809a-a3c4-4301-8c37-bc98c5037100',\n",
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       " 'c3842716-fe67-4504-98f4-bc683b71776a',\n",
       " 'a267886f-a451-4c7a-8f76-d7bccd9332bb',\n",
       " '7cf2c501-9291-4e9d-ab2d-741d5fd250ea',\n",
       " 'ab099af4-6e11-439e-93af-85f0f04aecc1',\n",
       " '0c01eae0-2469-4801-98b6-39d94a62288f',\n",
       " '39bcd605-4c25-4e71-b9c5-7c85b487cd8f',\n",
       " '0102c089-c88f-4ca6-9e04-28e0bf5619b2',\n",
       " '174306b8-8a05-4e05-ad12-d1756a5fe99a',\n",
       " '42690e13-9f26-48cf-8795-f52b11ac6526',\n",
       " '1dc1ed37-833f-4d33-bce9-01ad33e9572c',\n",
       " 'd2c63cd1-0e86-4a0f-900a-0a679e2427f2',\n",
       " 'e5f2fda3-0201-41b9-9c70-d2a4028ca55d',\n",
       " '3cfe8691-4284-4902-b760-3885c3ba7349',\n",
       " '5f048c2b-3eb1-490d-8b49-658c326733e1',\n",
       " 'f6ab2a71-cda7-4170-b6d1-1cc4353fb7bc',\n",
       " '9cb33c5b-dd02-4696-922d-ba4e4816dcba',\n",
       " '4d085dc8-f3c8-48e8-88de-121448cf3eb0',\n",
       " '3da0a253-b5a9-4241-a3fe-39d5545e618e',\n",
       " 'fe8c8d00-619e-493a-9ed2-8054d01cbf92',\n",
       " 'b2c4dda6-79eb-415b-b20e-5e60691f0c3f',\n",
       " '4b0fdc5a-33e1-41f7-9b91-4810aceb0506',\n",
       " '8676ae4a-9e9e-4e86-8ac3-33df2a69cfde',\n",
       " 'a4cea9f9-2d4f-430d-849e-e3b2a09af152',\n",
       " '55d02b8b-20f0-43a6-86fb-14d87c8812d5',\n",
       " '7074322d-8921-4b72-acee-fb0b941e9574',\n",
       " 'c80cda0c-c8db-44d7-a2d2-caa38cb66e89',\n",
       " 'd6d318d5-ed27-41be-ac12-2ba0dc3c59a6',\n",
       " '21a45f6c-121b-45d5-bd9f-6dcbec133304',\n",
       " '950d2695-247b-4b02-a36f-4164f5cd359b',\n",
       " '0742425a-6003-40a1-be3f-9bc172304bd7',\n",
       " 'c4815810-c86e-4e1c-95d3-ae30704d0434',\n",
       " 'a94139d9-7c0b-4342-8de2-11bd135e4e63',\n",
       " 'c8e2eb7d-be24-4811-8159-08d4a2009e01',\n",
       " '99028662-9359-47a2-b0e3-d6e5ee1cf658',\n",
       " '83fefdb2-62eb-48d4-a43e-8e0c156f054e',\n",
       " '7e732841-528c-40c4-8dd4-c32858d5fa93',\n",
       " '7c035e19-49b7-4a65-8cf2-2d3d2af8632b',\n",
       " 'a17204f5-1905-4f8c-b253-f4ff09178ef1',\n",
       " '2f36ee27-de10-4154-bbfb-c873e3f1f5f4',\n",
       " '0171c615-cfa8-4e09-a695-f2ca33f0f081',\n",
       " ...]"
      ]
     },
     "execution_count": 229,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "meta = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\stad\\\\metadata.csv')\n",
    "metasample=meta['file_id'].tolist()\n",
    "metasample"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 203,
   "id": "f3907543",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "(2108, 691)"
      ]
     },
     "execution_count": 203,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(micsample), len(metasample)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 204,
   "id": "74c559fd",
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "1330 199\n",
      "1331 226\n",
      "1332 503\n",
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      "1334 194\n",
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      "1522 478\n",
      "1523 148\n",
      "1524 234\n",
      "1525 197\n",
      "1526 273\n",
      "1527 338\n",
      "1528 299\n",
      "1529 370\n",
      "1530 253\n",
      "1531 305\n",
      "1532 324\n",
      "1533 428\n",
      "1534 207\n",
      "1535 468\n",
      "1536 283\n",
      "1537 347\n",
      "1538 317\n",
      "1539 462\n",
      "1540 467\n",
      "1541 436\n",
      "1542 427\n",
      "1543 460\n",
      "1544 385\n",
      "1545 155\n",
      "1546 300\n",
      "1547 457\n",
      "1548 186\n",
      "1549 151\n",
      "1550 438\n",
      "1551 290\n",
      "1552 498\n",
      "1553 516\n",
      "1554 177\n",
      "1555 418\n",
      "1556 156\n",
      "1557 404\n",
      "1558 296\n",
      "1559 482\n",
      "1560 160\n",
      "1561 377\n",
      "1562 388\n",
      "1563 490\n",
      "1564 504\n",
      "1565 182\n",
      "1566 257\n",
      "1567 165\n",
      "1568 162\n",
      "1569 254\n",
      "1570 497\n",
      "1571 246\n",
      "1572 392\n",
      "1573 143\n",
      "1574 454\n",
      "1575 220\n",
      "1576 398\n",
      "1577 513\n"
     ]
    }
   ],
   "source": [
    "index = []\n",
    "sampleid = []\n",
    "for i in range(len(micsample)):\n",
    "    for j in range(len(metasample)):\n",
    "        if micsample[i] == metasample[j]:\n",
    "            index.append(i)\n",
    "            sampleid.append(micsample[i])\n",
    "            print(i,j)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 205,
   "id": "21ada140",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['0038dc24-f02e-4be2-8deb-19c081d7d548',\n",
       " '00a7766f-f90c-45ea-afe2-2d505827c415',\n",
       " '01c1eccc-fb5b-4f89-a88a-5e1cd6b403e0',\n",
       " '028d1914-f43c-44f3-8ff9-9a13c7e99d0f',\n",
       " '02ae7490-c0ce-4749-9bd4-9cb88643cead',\n",
       " '046eaa7e-6212-4a9f-bc59-1cf439f92fe0',\n",
       " '0494ee12-b519-4dcf-b031-5ad3e975aeb7',\n",
       " '05874944-eca6-4bc6-9359-a68b64015ba6',\n",
       " '065620af-1203-4ee7-8361-7fbb2df86518',\n",
       " '0790f9b2-9fe9-4a7f-a64a-4fb52e218652',\n",
       " '07e57a26-eee2-4505-b799-c10c327e4c16',\n",
       " '087f7b07-0952-46b5-9787-616bdecf9476',\n",
       " '08ecce69-3353-44c5-9694-bcd13e5e35f2',\n",
       " '0bd5c33d-08da-41cf-9f13-ccaa664e34cf',\n",
       " '0d605d48-174b-44af-8a9b-1403b70ba16d',\n",
       " '0e889b37-9e68-4359-b3eb-2e37ae623372',\n",
       " '0f080608-cb65-435b-bb5a-1e6fed18db5d',\n",
       " '0f8a2988-ef44-4952-af73-31420028019f',\n",
       " '10496104-358d-4079-9c14-114c2d741ecd',\n",
       " '10a63aba-06a3-4209-8b59-dcb499e632ea',\n",
       " '13794d66-5440-47ae-925e-ad5053c36720',\n",
       " '14955ce7-aa53-4ca4-8e22-fce0e025a92a',\n",
       " '14e48042-7aad-4c05-8a2c-0bd65e1c0138',\n",
       " '16d52af0-e264-4469-915a-678a1f15e128',\n",
       " '179aff59-3246-4b51-ba85-d011e009a153',\n",
       " '1828d84f-1ee4-41a8-be9e-6f4c9ebb6bcb',\n",
       " '1a667a5e-a92f-4192-b545-3dbe6330748d',\n",
       " '1b76e7c9-baba-46bd-b4fd-439d30f8b737',\n",
       " '1ca0e457-270e-4d69-971f-2ef7d278568d',\n",
       " '1d913be9-0541-4517-8be2-2991ecb6c80b',\n",
       " '1defcb0f-1264-4111-973b-58220976de32',\n",
       " '1e4248ab-a033-4f62-9a87-ecee3473860c',\n",
       " '214f5e2d-a81a-483c-9117-a0c05d399ec9',\n",
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       " '22c56f75-51b0-40b9-bcda-d8c45fcca74c',\n",
       " '2346ca8c-0e20-4a62-a80a-55f9cc4cc00c',\n",
       " '2486cff1-2b5e-4fb5-aece-40ad7438a0d2',\n",
       " '2520954d-8bc3-4b00-9a2f-47ba81c1eee5',\n",
       " '2585bb2e-6bfe-4b0b-8190-9bd864505806',\n",
       " '276beb6c-a3d8-45e2-822b-4dfdad47bd9b',\n",
       " '285827c5-1eed-4449-b4a3-f1fbc169ed8c',\n",
       " '28beec02-7102-4b61-af1f-766ca9319fad',\n",
       " '29855362-cdf6-4d77-a6ee-b3d66e31673e',\n",
       " '2a49bf60-4f3d-4b9e-aaf6-c3db478dfc17',\n",
       " '2b05e7e4-9717-4faf-a283-93cd88f8d3ab',\n",
       " '2bfa2a84-a270-45fa-a545-6660ae222023',\n",
       " '2d1700f2-0f9b-4af6-a59b-4e6a51e01368',\n",
       " '2d29fdde-16de-4220-83ef-ff994e48a6fc',\n",
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       " '318a7b76-693e-4dd9-86f7-d73b7d85edb0',\n",
       " '321490f6-0725-47df-b078-481994ba7dd5',\n",
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       " '365f9592-211a-489d-acbd-56dc5ea0293a',\n",
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       " '3b9319c1-307d-48d7-a49d-921c66e77bf4',\n",
       " '3d5228c0-d420-4db9-8ac2-e223eb4a9ff2',\n",
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       " 'c95bf5f7-4ba7-4009-b347-b6caac6e2f6f',\n",
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       " 'da5a4cdf-1e63-4afe-b922-f09afd48bb4d',\n",
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       " 'db073c92-3ec9-4d53-a316-6bef10a18c38',\n",
       " 'dbe83c6e-f9f1-4e5e-ad64-f342d8970fb0',\n",
       " 'dc73f526-76d3-410d-8b36-b16624627fbd',\n",
       " 'dd2bb19a-cb24-4a86-aed3-f4b549f3ee8f',\n",
       " 'dd5b55a4-b0a9-496c-81ab-e4ce744dad0a',\n",
       " 'dfcdf8b6-865d-4975-9778-50d07dc773e1',\n",
       " 'e1bc1443-0aad-4ceb-be9f-f907685f8963',\n",
       " 'e3a54bc5-fcc8-43eb-acfc-8da686069312',\n",
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       " 'e75ff559-3b39-48c8-ac39-6385ea6d23e0',\n",
       " 'e8869020-e3d8-4a18-a82a-6908451fe02c',\n",
       " 'ea368da9-e8bf-4004-979f-70fbfcdc2fad',\n",
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       "[106 rows x 248 columns]"
      ]
     },
     "execution_count": 207,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "data = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\csvcleaned_file.csv', index_col=0)\n",
    "selected_columns = data[sampleid]\n",
    "selected_columns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 208,
   "id": "1d09e128",
   "metadata": {},
   "outputs": [],
   "source": [
    "selected_columns.to_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\esca\\\\csvcleaned_file.csv')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 210,
   "id": "fd11238b",
   "metadata": {},
   "outputs": [
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       "      <td>0.000000</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1917878.0</th>\n",
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       "      <td>0.000000</td>\n",
       "      <td>...</td>\n",
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       "      <td>0.000000</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>106 rows × 248 columns</p>\n",
       "</div>"
      ],
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       "\n",
       "            fe632266-39dd-42b3-8118-3acf1ce614b5  \\\n",
       "Unnamed: 0                                         \n",
       "2.0                                       137.28   \n",
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       "...                                          ...   \n",
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       "\n",
       "            fee6f41a-9435-44ae-9eed-c9864f280eaf  \n",
       "Unnamed: 0                                        \n",
       "2.0                                     4.933333  \n",
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       "...                                          ...  \n",
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       "\n",
       "[106 rows x 248 columns]"
      ]
     },
     "execution_count": 210,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 220,
   "id": "fd89e3a0",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "79.63099868213816"
      ]
     },
     "execution_count": 220,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "test = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\hnsc\\\\csvcleaned_file.csv', index_col=0, header=0)\n",
    "import numpy as np\n",
    "# 计算0的数量\n",
    "zero_count = np.sum(test.values == 0)\n",
    "\n",
    "# 计算总数据数量\n",
    "total_count = test.values.size\n",
    "\n",
    "# 计算0占的百分比\n",
    "zero_percentage = (zero_count / total_count) * 100\n",
    "zero_percentage"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 221,
   "id": "4ff8ebfa",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "D:\\Anaconda\\envs\\DL\\lib\\site-packages\\anndata\\_core\\anndata.py:183: ImplicitModificationWarning: Transforming to str index.\n",
      "  warnings.warn(\"Transforming to str index.\", ImplicitModificationWarning)\n"
     ]
    }
   ],
   "source": [
    "import anndata as ad\n",
    "adata = ad.AnnData(test.T)\n",
    "adata.write('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\hnsc\\\\microdata.h5ad')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "5ab3ac66",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 289,
   "id": "83154814",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "Index(['00296c5e-2e37-4d90-ba8c-ac466a7f71f1',\n",
       "       '004baf22-9eea-47db-b414-d84ff8ec728e',\n",
       "       '00e1676d-b6c5-4d72-b69c-0110e38f6aef',\n",
       "       '01508ee7-c807-4831-a0d9-20181cddd3ff',\n",
       "       '017260da-a89f-42c5-9c88-e8d3d09b41c3',\n",
       "       '021563e6-29fa-463a-986c-24046ce2dfbf',\n",
       "       '026f474b-c104-40fb-a6a6-ebb81672adc3',\n",
       "       '02c8ccd0-20a7-41f7-8b94-7937c640c82e',\n",
       "       '036154a7-5b86-43dd-888a-15d20016be18',\n",
       "       '036bd87e-37de-4718-bafb-b81e0003d788',\n",
       "       ...\n",
       "       'fbe9a582-059a-4eaa-8cb6-aec6eb666df5',\n",
       "       'fbec4056-604e-4014-b952-c38903a036f9',\n",
       "       'fc7c1a67-f654-41b4-bb52-10c823607297',\n",
       "       'fcccab2f-c0a2-4349-ba3c-a629d4e5ca23',\n",
       "       'fd0e07fe-b542-4038-85f7-43aa25b2153c',\n",
       "       'fdba865e-5db6-4d14-8260-766a699fbaf1',\n",
       "       'ff07d83f-411c-4143-a60c-7b377809cc91',\n",
       "       'ff1bcd6d-2917-412b-9f51-c8d7c90aed99',\n",
       "       'ffa9d988-2874-4e79-b1f9-6af5dfd61736',\n",
       "       'ffdbb099-fda4-4ec8-ae3b-3e0a81296ba7'],\n",
       "      dtype='object', length=587)"
      ]
     },
     "execution_count": 289,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "idf = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\hnsc\\\\csvcleaned_file.csv', index_col=0, header=0)\n",
    "idf.columns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 290,
   "id": "3c28588d",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['74dfb1a3-cdd5-4360-923f-2c18cd7e6044',\n",
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       " 'e5709830-4141-4354-94f0-94f576fe84c9',\n",
       " '33b84364-a81e-48fd-89d6-552802c7ff18',\n",
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       " 'c96f69ef-daa9-46cf-b34f-d7c328956edd',\n",
       " 'db7d0f46-b4eb-4cad-8324-08d0a5781624',\n",
       " 'bd85b141-d240-412f-9b74-379c4e3797d2',\n",
       " '03c22e39-15a9-4b8a-8db1-cf41d618b7fc',\n",
       " '2dc9d158-11f1-4d04-a6e6-8075121def2e',\n",
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       " '6a1956ba-8f1c-4504-86e4-1395788b83ff',\n",
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       " 'eac78b10-617e-41af-8cf9-dd55919bc5c7',\n",
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       " '6960ecd7-3240-41ff-ac5e-da3d4660d97e',\n",
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       " '614d8ae1-677d-44c7-90bb-a3f6db306051',\n",
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       " '13c4652c-3afa-4dcb-9adc-48751f999219',\n",
       " 'df03eedd-3ea8-45a0-8a4c-8ce70b18253a',\n",
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       " 'e43f537d-00df-40a9-9913-62f596d8542d',\n",
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       " 'da8cc6a9-34d7-408d-acba-9cc86d836655',\n",
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       " '743ca545-4f01-4e4d-af19-4f4cd8848ded',\n",
       " '317b5030-3240-4ee1-be23-d216b1e23447',\n",
       " '9595511b-f1ab-4e79-b6db-91bde95b7a41',\n",
       " '4b4edc5a-ea8f-44e7-8448-5843da0d2298',\n",
       " '1e2848bc-a7ec-44cb-8ced-b2dde41af27f',\n",
       " '1bf407bc-b919-4f06-a652-04acfac950ed',\n",
       " '1f02c7f4-685f-46c5-8f64-3a7c6b30a58d',\n",
       " '28ce5f2f-700c-4cda-825f-3a20ae74a7f0',\n",
       " '09c1fe22-6718-468b-818d-9cf555d2e899',\n",
       " '63e65803-4b78-4438-aa23-4e3813762681',\n",
       " 'd365f0e8-a44c-495c-9189-6916c0b19a09',\n",
       " 'f59e7861-dd6a-40f7-99b4-b1535d1c2a37',\n",
       " '5fdebab9-78fa-45bd-b38c-b78c252999b1',\n",
       " '39845332-6b16-4dd0-8e7e-6a848f057378',\n",
       " '70f0c06c-5bb2-413f-bee6-63ad6a1d8bcc',\n",
       " '580b5204-7184-49f8-9c31-5f99afeacec5',\n",
       " 'af05e6d8-fb28-4599-8dfc-508342bab37d',\n",
       " '7b1dcdcb-786a-43c4-9c34-2a321cd5fafb',\n",
       " '08f0c27a-6878-4ba6-9fcc-e7c2e75ac50f',\n",
       " 'f6c9fe68-fe9a-4515-9cb6-a1bc0a8b2fbd',\n",
       " '6cae7328-3f0c-469e-9ace-f1000eda9d13',\n",
       " 'c2bf1542-6e6a-416a-b995-31fb82ede1ff',\n",
       " '54615dec-44ae-44af-a655-0e4cd0a0321c',\n",
       " 'bda8578e-4406-49b6-882a-77801b5e0c08',\n",
       " '54c5f9f4-d3df-4d1d-bda5-6fc16f9286fd',\n",
       " 'bb5d7227-b6b9-4a24-a381-c5323bcffe0f',\n",
       " 'df0c7b20-4da3-4f39-87a0-dd2ec6d8c2a6',\n",
       " '017260da-a89f-42c5-9c88-e8d3d09b41c3',\n",
       " 'a8ebd099-c16d-48be-8262-8e4496ebce89',\n",
       " ...]"
      ]
     },
     "execution_count": 290,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "meta = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\hnsc\\\\metadata.csv')\n",
    "metasample=meta['file_id'].tolist()\n",
    "metasample"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 291,
   "id": "475d0ed3",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Solid Tissue Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
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       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Solid Tissue Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Blood Derived Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " ...]"
      ]
     },
     "execution_count": 291,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "metatype = meta['sample.sample_type'].tolist()\n",
    "metatype "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 292,
   "id": "e817900e",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "[nan,\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
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       " 'Stage III',\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage III',\n",
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       " 'Stage IVA',\n",
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       " 'Stage III',\n",
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       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage I',\n",
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       " nan,\n",
       " 'Stage IVA',\n",
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       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
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       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage I',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
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       " 'Stage II',\n",
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       " nan,\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage I',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage III',\n",
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       " 'Stage II',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVB',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage IVB',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
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       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage III',\n",
       " nan,\n",
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       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
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       " nan,\n",
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       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
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       " 'Stage II',\n",
       " 'Stage III',\n",
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       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
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       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
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       " nan,\n",
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       " nan,\n",
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       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVB',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVB',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage IVB',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
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       " 'Stage I',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVB',\n",
       " 'Stage I',\n",
       " 'Stage I',\n",
       " 'Stage I',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage I',\n",
       " nan,\n",
       " 'Stage I',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage I',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVB',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage II',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVB',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVB',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " ...]"
      ]
     },
     "execution_count": 292,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "metastage = meta['case.pathologic_stage'].tolist()\n",
    "metastage"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 293,
   "id": "716a8062",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
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       " '559ec594-9eec-44d3-9c30-f428e0b7ea73',\n",
       " 'f2d15686-7344-4fc4-aec0-73886768d4a9',\n",
       " '98c02211-f508-4e2e-aaab-f082f66b9b45',\n",
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       " 'a454d89e-9911-4b67-bac4-8a5da33ecf42',\n",
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       " '84519424-a42e-4ccb-b5e6-9bfd0185343a',\n",
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       " '40408841-0f23-43d9-9a90-0cb75cbc8605',\n",
       " '899e4cef-8fa8-425b-bf0c-839f08227b04',\n",
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       " 'da8cc6a9-34d7-408d-acba-9cc86d836655',\n",
       " '6037cdfc-6338-42f4-800c-7e7eabf95f9f',\n",
       " '743ca545-4f01-4e4d-af19-4f4cd8848ded',\n",
       " '317b5030-3240-4ee1-be23-d216b1e23447',\n",
       " '9595511b-f1ab-4e79-b6db-91bde95b7a41',\n",
       " '4b4edc5a-ea8f-44e7-8448-5843da0d2298',\n",
       " '1e2848bc-a7ec-44cb-8ced-b2dde41af27f',\n",
       " '1bf407bc-b919-4f06-a652-04acfac950ed',\n",
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       " '28ce5f2f-700c-4cda-825f-3a20ae74a7f0',\n",
       " '09c1fe22-6718-468b-818d-9cf555d2e899',\n",
       " '63e65803-4b78-4438-aa23-4e3813762681',\n",
       " 'd365f0e8-a44c-495c-9189-6916c0b19a09',\n",
       " 'f59e7861-dd6a-40f7-99b4-b1535d1c2a37',\n",
       " '5fdebab9-78fa-45bd-b38c-b78c252999b1',\n",
       " '39845332-6b16-4dd0-8e7e-6a848f057378',\n",
       " '70f0c06c-5bb2-413f-bee6-63ad6a1d8bcc',\n",
       " '580b5204-7184-49f8-9c31-5f99afeacec5',\n",
       " 'af05e6d8-fb28-4599-8dfc-508342bab37d',\n",
       " '7b1dcdcb-786a-43c4-9c34-2a321cd5fafb',\n",
       " '08f0c27a-6878-4ba6-9fcc-e7c2e75ac50f',\n",
       " 'f6c9fe68-fe9a-4515-9cb6-a1bc0a8b2fbd',\n",
       " '6cae7328-3f0c-469e-9ace-f1000eda9d13',\n",
       " 'c2bf1542-6e6a-416a-b995-31fb82ede1ff',\n",
       " '54615dec-44ae-44af-a655-0e4cd0a0321c',\n",
       " 'bda8578e-4406-49b6-882a-77801b5e0c08',\n",
       " '54c5f9f4-d3df-4d1d-bda5-6fc16f9286fd',\n",
       " 'bb5d7227-b6b9-4a24-a381-c5323bcffe0f',\n",
       " 'df0c7b20-4da3-4f39-87a0-dd2ec6d8c2a6',\n",
       " '017260da-a89f-42c5-9c88-e8d3d09b41c3',\n",
       " 'a8ebd099-c16d-48be-8262-8e4496ebce89',\n",
       " ...]"
      ]
     },
     "execution_count": 293,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "metasample"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 294,
   "id": "99d024bc",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "(587, 1982, 1982)"
      ]
     },
     "execution_count": 294,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(idf.columns), len(metastage), len(metatype)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 295,
   "id": "f30eb11b",
   "metadata": {},
   "outputs": [],
   "source": [
    "metastage_list = []\n",
    "metatype_list = []\n",
    "idf_list = idf.columns.tolist()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 296,
   "id": "842951fc",
   "metadata": {},
   "outputs": [],
   "source": [
    "for i in idf_list:\n",
    "    for j in range (len(metasample)):\n",
    "        if i == metasample[j]:\n",
    "            metastage_list.append(metastage[j])\n",
    "            metatype_list.append(metatype[j])           "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 297,
   "id": "6f1b2ca5",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "(587, 587, 587)"
      ]
     },
     "execution_count": 297,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "len(idf.columns), len(metastage_list), len(metatype_list)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 298,
   "id": "b91004ef",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVB',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage II',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " nan,\n",
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       " 'Stage I',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " nan,\n",
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       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
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       " 'Stage IVA',\n",
       " 'Stage II',\n",
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       " 'Stage IVA',\n",
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       " nan,\n",
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       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
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       " 'Stage IVB',\n",
       " nan,\n",
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       " 'Stage II',\n",
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       " nan,\n",
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       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
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       " nan,\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
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       " nan,\n",
       " nan,\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " nan,\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
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       " nan,\n",
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       " 'Stage IVA',\n",
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       " 'Stage II',\n",
       " 'Stage III',\n",
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       " 'Stage III',\n",
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       " 'Stage IVA',\n",
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       " nan,\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " nan,\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " nan,\n",
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       " nan,\n",
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       " nan,\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVB',\n",
       " 'Stage IVB',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage II',\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
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       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage II',\n",
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       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage III',\n",
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       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
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       " 'Stage III',\n",
       " 'Stage III',\n",
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       " 'Stage II',\n",
       " 'Stage II',\n",
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       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage IVB',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
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       " 'Stage IVA',\n",
       " 'Stage III',\n",
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       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
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       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
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       " 'Stage III',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVC',\n",
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       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
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       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " nan,\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage I',\n",
       " 'Stage III',\n",
       " nan,\n",
       " 'Stage I',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage II',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage II',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage IVB',\n",
       " 'Stage IVA',\n",
       " 'Stage III',\n",
       " 'Stage III',\n",
       " 'Stage IVA',\n",
       " nan,\n",
       " 'Stage I',\n",
       " nan,\n",
       " 'Stage III']"
      ]
     },
     "execution_count": 298,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "metastage_list"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 299,
   "id": "8b192f5e",
   "metadata": {},
   "outputs": [
    {
     "data": {
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       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Solid Tissue Normal',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor',\n",
       " 'Primary Tumor']"
      ]
     },
     "execution_count": 299,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "metatype_list"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 300,
   "id": "ee252d45",
   "metadata": {},
   "outputs": [],
   "source": [
    "metastage_list = pd.DataFrame(metastage_list)\n",
    "metastage_list.to_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\hnsc\\\\stage.csv', index=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 301,
   "id": "565ea1e6",
   "metadata": {},
   "outputs": [],
   "source": [
    "metatype_list = pd.DataFrame(metatype_list)\n",
    "metatype_list.to_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\hnsc\\\\type.csv', index=False)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "4a096d91",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "a0462b31",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 302,
   "id": "6d247183",
   "metadata": {},
   "outputs": [],
   "source": [
    "c1 = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\stad\\\\csvcleaned_file.csv')\n",
    "c2 = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\esca\\\\csvcleaned_file.csv')\n",
    "c3 = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\coad\\\\csvcleaned_file.csv')\n",
    "c4 = pd.read_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\read\\\\csvcleaned_file.csv')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 303,
   "id": "e1a7c9bb",
   "metadata": {},
   "outputs": [
    {
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     },
     "execution_count": 303,
     "metadata": {},
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  },
  {
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       "[106 rows x 249 columns]"
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     },
     "execution_count": 304,
     "metadata": {},
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   "source": [
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  },
  {
   "cell_type": "code",
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       "[106 rows x 1525 columns]"
      ]
     },
     "execution_count": 305,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "concatenated_columns = pd.concat([c1, c2, c3, c4], axis=1)\n",
    "concatenated_columns"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 306,
   "id": "d00f043d",
   "metadata": {},
   "outputs": [],
   "source": [
    "concatenated_columns.to_csv('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\hnsc\\\\pre_train.csv')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 307,
   "id": "fb6919c1",
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "D:\\Anaconda\\envs\\DL\\lib\\site-packages\\anndata\\_core\\anndata.py:183: ImplicitModificationWarning: Transforming to str index.\n",
      "  warnings.warn(\"Transforming to str index.\", ImplicitModificationWarning)\n",
      "D:\\Anaconda\\envs\\DL\\lib\\site-packages\\anndata\\_core\\anndata.py:1908: UserWarning: Variable names are not unique. To make them unique, call `.var_names_make_unique`.\n",
      "  utils.warn_names_duplicates(\"var\")\n"
     ]
    }
   ],
   "source": [
    "adata = ad.AnnData(concatenated_columns)\n",
    "adata.write('D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\hnsc\\\\pre_train.h5ad')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 286,
   "id": "6c3ec0c2",
   "metadata": {},
   "outputs": [],
   "source": [
    "import scanpy as sc\n",
    "sstad = sc.read_h5ad(\"D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\stad\\\\microdata.h5ad\")\n",
    "ccoad = sc.read_h5ad(\"D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\coad\\\\microdata.h5ad\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 287,
   "id": "1dc9aef1",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "AnnData object with n_obs × n_vars = 530 × 106"
      ]
     },
     "execution_count": 287,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "sstad"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 288,
   "id": "cb2ad7e4",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "AnnData object with n_obs × n_vars = 561 × 106"
      ]
     },
     "execution_count": 288,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "ccoad"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 309,
   "id": "9505dd60",
   "metadata": {},
   "outputs": [
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       "[1289 rows x 2109 columns]"
      ]
     },
     "execution_count": 309,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "T = pd.read_csv(\"D:\\\\TCGA\\mbVDiT_data\\\\WXS\\\\solid\\\\bacteria.WXS.solid.file.reads.csv\")\n",
    "T"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "dbf5a4f1",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "1db44921",
   "metadata": {},
   "outputs": [],
   "source": []
  },
  {
   "cell_type": "code",
   "execution_count": 344,
   "id": "7933f278",
   "metadata": {},
   "outputs": [
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       "[2108 rows x 106 columns]"
      ]
     },
     "execution_count": 344,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "mic_data = pd.read_csv('D:\\TCGA\\mbVDiT_data\\WXS\\solid\\\\csvcleaned_file.csv', header=0, index_col=False, usecols=lambda column: column != 'Unnamed: 0').T\n",
    "mic_data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 345,
   "id": "e9a9f3b3",
   "metadata": {},
   "outputs": [
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       "    <tr>\n",
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       "  </tbody>\n",
       "</table>\n",
       "<p>2108 rows × 103 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "                                                0     1    2    3    \\\n",
       "00b7ee04-b97b-49ee-b27b-13f6fb981fec   17350.620633   0.0  0.0  0.0   \n",
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       "026ac354-163a-44c3-8b8e-25365c0998be     325.684211   3.0  0.0  0.0   \n",
       "...                                             ...   ...  ...  ...   \n",
       "fe0ec0de-9a97-4154-81f7-0ec63f514bb7     212.198113   2.0  0.0  0.0   \n",
       "fe61bfb4-b612-4675-83fb-086a0fed9f71      70.342205   0.0  0.0  0.0   \n",
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       "\n",
       "                                               4             5      6    \\\n",
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       "00f789a0-bc97-48a3-abff-51d0acaff845  54457.363332  54365.319002  185.0   \n",
       "012fc920-2c94-4596-a937-9e6f6a3fffd8    383.000000    383.000000    0.0   \n",
       "014560ce-4236-4fbe-8f1c-ac5c67bc1517     22.000000     22.000000    0.0   \n",
       "026ac354-163a-44c3-8b8e-25365c0998be     20.000000     20.000000    0.0   \n",
       "...                                            ...           ...    ...   \n",
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       "ff99c2ca-1bee-4b4f-a0ef-44dc7d6c1f31      0.000000      0.000000    0.0   \n",
       "\n",
       "                                               7       8      9    ...  \\\n",
       "00b7ee04-b97b-49ee-b27b-13f6fb981fec      0.000000    36.0  125.0  ...   \n",
       "00f789a0-bc97-48a3-abff-51d0acaff845  13008.963263  5478.0   21.0  ...   \n",
       "012fc920-2c94-4596-a937-9e6f6a3fffd8      0.000000    20.0    0.0  ...   \n",
       "014560ce-4236-4fbe-8f1c-ac5c67bc1517      4.000000     0.0    0.0  ...   \n",
       "026ac354-163a-44c3-8b8e-25365c0998be     10.000000     0.0    1.0  ...   \n",
       "...                                            ...     ...    ...  ...   \n",
       "fe0ec0de-9a97-4154-81f7-0ec63f514bb7     30.000000     0.0    4.0  ...   \n",
       "fe61bfb4-b612-4675-83fb-086a0fed9f71     44.000000     0.0   10.0  ...   \n",
       "ff3d1fa3-5cc9-4614-aea9-e14e491ff021    135.000000     0.0    0.0  ...   \n",
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       "ff99c2ca-1bee-4b4f-a0ef-44dc7d6c1f31      0.000000     0.0    0.0  ...   \n",
       "\n",
       "                                             96    97    98    99   100  101  \\\n",
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       "026ac354-163a-44c3-8b8e-25365c0998be    0.000000   2.0   2.0   0.0  0.0  0.0   \n",
       "...                                          ...   ...   ...   ...  ...  ...   \n",
       "fe0ec0de-9a97-4154-81f7-0ec63f514bb7    0.000000   0.0   0.0   0.0  0.0  0.0   \n",
       "fe61bfb4-b612-4675-83fb-086a0fed9f71    0.000000   0.0   0.0   0.0  0.0  0.0   \n",
       "ff3d1fa3-5cc9-4614-aea9-e14e491ff021    0.000000   0.0   0.0   0.0  0.0  0.0   \n",
       "ff6a1163-7552-4a4b-af31-eed78955489c    0.000000   0.0   0.0   0.0  0.0  0.0   \n",
       "ff99c2ca-1bee-4b4f-a0ef-44dc7d6c1f31    0.000000   0.0   0.0   0.0  0.0  0.0   \n",
       "\n",
       "                                             102  103          104  105  \n",
       "00b7ee04-b97b-49ee-b27b-13f6fb981fec   56.842105  0.0    13.000000  0.0  \n",
       "00f789a0-bc97-48a3-abff-51d0acaff845  151.529412  0.0  4880.997544  0.0  \n",
       "012fc920-2c94-4596-a937-9e6f6a3fffd8    0.000000  0.0     0.000000  0.0  \n",
       "014560ce-4236-4fbe-8f1c-ac5c67bc1517    2.000000  0.0     0.000000  0.0  \n",
       "026ac354-163a-44c3-8b8e-25365c0998be    0.000000  0.0     0.000000  0.0  \n",
       "...                                          ...  ...          ...  ...  \n",
       "fe0ec0de-9a97-4154-81f7-0ec63f514bb7    6.000000  0.0     0.000000  0.0  \n",
       "fe61bfb4-b612-4675-83fb-086a0fed9f71    0.000000  0.0     0.000000  0.0  \n",
       "ff3d1fa3-5cc9-4614-aea9-e14e491ff021   11.000000  0.0     0.000000  0.0  \n",
       "ff6a1163-7552-4a4b-af31-eed78955489c    0.000000  0.0     0.000000  0.0  \n",
       "ff99c2ca-1bee-4b4f-a0ef-44dc7d6c1f31    0.000000  0.0     0.000000  0.0  \n",
       "\n",
       "[2108 rows x 103 columns]"
      ]
     },
     "execution_count": 345,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "zero_counts = mic_data.eq(0).sum()\n",
    "zero_ratio = zero_counts/2108\n",
    "columns_with_high_zeros = zero_counts[zero_ratio >= 0.95].index\n",
    "mic_data = mic_data.drop(columns=columns_with_high_zeros)\n",
    "mic_data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "01c0a760",
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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