diff --git a/definitions/subworkflows/cram_to_bam_and_index.wdl b/definitions/subworkflows/cram_to_bam_and_index.wdl index c55e054..cdc5088 100644 --- a/definitions/subworkflows/cram_to_bam_and_index.wdl +++ b/definitions/subworkflows/cram_to_bam_and_index.wdl @@ -4,7 +4,7 @@ import "../tools/cram_to_bam.wdl" as cb import "../tools/index_bam.wdl" as i workflow cramTobamAndIndex{ - input{ + input { File cram File cram_index File reference @@ -18,7 +18,7 @@ workflow cramTobamAndIndex{ cram_index=cram_index, reference=reference, reference_fai=reference_fai, - reference_dict=reference_dict, + reference_dict=reference_dict } call i.index_bam { @@ -30,6 +30,5 @@ workflow cramTobamAndIndex{ File indexed_bam = index_bam.indexed_bam File indexed_bam_bai = index_bam.indexed_bam_bai File indexed_bai = index_bam.indexed_bai - } } \ No newline at end of file