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hemato_swne_pseudotime_plot fail to function #32

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georgewu1999 opened this issue May 31, 2021 · 0 comments

georgewu1999 commented May 31, 2021

In reproducing the figure from the script:

pseudotime <- cds$Pseudotime; names(pseudotime) <- colnames(cds@reducedDimS);

pdf("hemato_swne_pseudotime_plot.pdf", width = 6, height = 5)
FeaturePlotSWNE(swne.embedding, pseudotime, alpha.plot = 0.4, label.size = 3.5, pt.size = 1.5)
Error in quantile.default(feature.scores, probs = quantiles) :
missing values and NaN's not allowed if 'na.rm' is FALSE

While other parts of the scripts worked well, the function failed. Is it possibly due to some bugs in the script? Thanks.

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