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<!DOCTYPE html>
<html lang="en">
<head>
<!-- Google Tag Manager -->
<script>(function(w,d,s,l,i){w[l]=w[l]||[];w[l].push({'gtm.start':
new Date().getTime(),event:'gtm.js'});var f=d.getElementsByTagName(s)[0],
j=d.createElement(s),dl=l!='dataLayer'?'&l='+l:'';j.async=true;j.src=
'https://www.googletagmanager.com/gtm.js?id='+i+dl;f.parentNode.insertBefore(j,f);
})(window,document,'script','dataLayer','GTM-KBF423Q');</script>
<!-- End Google Tag Manager -->
<title>Yigit Koray Babal</title>
<meta charset="utf-8"/>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">
<link rel="stylesheet" href="https://www.w3schools.com/w3css/4/w3.css">
<link rel='stylesheet' type='text/css' href='style.css'>
</head>
<body class="w3-text-white" style="background-color: #23252F; max-height: fit-content;">
<!-- Google Tag Manager (noscript) -->
<noscript><iframe src="https://www.googletagmanager.com/ns.html?id=GTM-KBF423Q"
height="0" width="0" style="display:none;visibility:hidden"></iframe></noscript>
<!-- End Google Tag Manager (noscript) -->
<div class="w3-bar w3-padding w3-dark-gray" style="position: fixed;">
<a href="#about" class="w3-bar-item w3-button w3-mobile w3-left">About</a>
<a href="#research" class="w3-bar-item w3-button w3-mobile w3-left w3-hide-small">Research</a>
<a href="#publication" class="w3-bar-item w3-button w3-mobile w3-left w3-hide-small">Publication</a>
<div class="w3-dropdown-hover w3-dark-gray w3-right">
<button class="w3-button fa fa-language"></button>
<div class="w3-dropdown-content w3-bar-block w3-card-4 w3-dark-gray" style="position: fixed; right:0;">
<a href="/content/en/index.html" class="w3-bar-item w3-button">English</a>
<a href="/content/tr/index.html" class="w3-bar-item w3-button">Türkçe</a>
</div>
</div>
<a href="https://www.linkedin.com/in/yigit-koray-babal-b76317137/" class="w3-bar-item w3-mobile w3-button w3-hide-small w3-right fa fa-linkedin"></a>
<a href="https://twitter.com/BabalKoray" class="w3-bar-item w3-mobile w3-button w3-hide-small w3-right fa fa-twitter"></a>
<a href="https://github.com/yigitbabal" class="w3-bar-item w3-mobile w3-button w3-hide-small w3-right fa fa-github"></a>
<a href="mailto:[email protected]" class="w3-bar-item w3-mobile w3-button w3-hide-small w3-right fa fa-envelope"></a>
</div>
<br>
<div class="w3-panel w3-cell w3-mobile w3-padding-64" id="about">
<div class="w3-center w3-cell w3-mobile w3-third">
<img class="w3-circle" src="/images/Yigit_Koray_Babal.jpg" alt="YKB" style="max-width: 60%; height: auto;">
<h4>Yigit Koray Babal</h4>
<h5>PhD candidate</h5>
<a href="https://axanlab.com">@AxanLab</a>
<br>
<a href="https://www.gtu.edu.tr/?languageId=2">Gebze Technical University</a>
<br>
<div class="w3-bar">
<a href="https://www.linkedin.com/in/yigit-koray-babal-b76317137/" class="w3-bar-item w3-mobile w3-button w3-right fa fa-linkedin"></a>
<a href="https://twitter.com/BabalKoray" class="w3-bar-item w3-mobile w3-button w3-right fa fa-twitter"></a>
<a href="https://github.com/yigitbabal" class="w3-bar-item w3-mobile w3-button w3-right fa fa-github"></a>
<a href="mailto:[email protected]" class="w3-bar-item w3-mobile w3-button w3-right fa fa-envelope"></a>
</div>
</div>
<div class="w3-cell w3-mobile w3-twothird">
<h2 class="w3-text-orange">About</h2>
<hr>
<p>I am a Ph.D. candidate focusing on the development and use of computational approaches in the neurobiology field.
My research focus is gene regulation of nervous system development especially the evolution of neuronal differentiation.
To understand nervous system development, I am mainly using multi-omic data analysis techniques such as scRNAseq, scATACseq,
and ChIPseq by extensively usage of Linux (HPC clusters and bash scripting), R, and Python.
I am also Linux enthusiastic and interested in web development.
</p>
<hr>
<div class="w3-panel w3-cell w3-mobile" id="education">
<div class="w3-container w3-cell w3-mobile">
<h2 class="w3-text-orange">Education</h2>
<h4><a href="#education" class="fa fa-graduation-cap" style="text-decoration: none;"> PhD in Biotechnology - 2023<br><p class="w3-center">Gebze Technical University</p></a></h4>
<h4><a href="#education" class="fa fa-graduation-cap" style="text-decoration: none;"> MSc in Molecular Biology - 2018<br><p class="w3-center">Gebze Technical University</p></a></h4>
<h4><a href="#education" class="fa fa-graduation-cap" style="text-decoration: none;"> BSc in Biology - 2016<br><p class="w3-center">Marmara University</p></a></h4>
</div>
<div class="w3-container w3-cell w3-border-left w3-hide-small"></div>
<div class="w3-container w3-cell w3-mobile w3-padding">
<h2 class="w3-text-orange">Computational Skills</h2>
<div class="w3-dark-gray" style="width: 350px;">
<div class="w3-container w3-blue w3-center" style="width:90%">R</div>
</div>
<br>
<div class="w3-dark-gray" style="width: 350px;">
<div class="w3-container w3-orange w3-center" style="width:80%">Linux</div>
</div>
<br>
<div class="w3-dark-gray" style="width: 350px;">
<div class="w3-container w3-yellow w3-center" style="width:50%">Pyhton</div>
</div>
<br>
<div class="w3-dark-gray" style="width: 350px;">
<div class="w3-container w3-green w3-center" style="width:40%;">HTML & CSS</div>
</div>
</div>
</div>
<hr class="w3-hide-small">
<div class="w3-panel w3-cell w3-mobile w3-hide-small" id="research">
<div class="w3-container w3-cell w3-mobile">
<h2 class="w3-text-orange">Research Projects</h2>
<button onclick="accord('research1')" class="w3-button w3-dark-gray w3-block w3-mobile w3-left-align">Evolutionary comparison of neuronal differentiation</button>
<div id="research1" class="w3-container w3-hide w3-mobile">
<p>The main PhD project is based on transcriptomic comparison of neuronal differentiation between different species such as human, mouse, drosophila, C.elegans and other non-human primates
regulated by ETS transcription factor family. In this project, I am mainly constructing ETS mediated gene regulatory network on neuronal diffentiation samples (NSCs/NPCs vs Neurons)
and comparing biological features accross different species (Under manuscript preparation).
</p>
</div>
<button onclick="accord('research2')" class="w3-button w3-dark-gray w3-block w3-mobile w3-left-align">Regulatory role of ETS transcription factor family members during glioma progression</button>
<div id="research2" class="w3-container w3-hide w3-mobile">
<p>In this project, transcriptional profiling diffrent stages of glioma were investigated using gene regulatory network inference algorithms for ETS transcription factor family
and regulatory patterns of glioma stages were compared in the context of ETS regulation (<a href="https://doi.org/10.3390/jpm11020138">Babal et al. 2021</a>)
</p>
</div>
<button onclick="accord('research3')" class="w3-button w3-dark-gray w3-block w3-mobile w3-left-align">Cell-cell interaction network of multiple sclerosis</button>
<div id="research3" class="w3-container w3-hide w3-mobile">
<p>In this project, transcriptomic profiles of gray and white matter tissue samples from multiple sclerosis patients were compared
and cell-cell interaction network were constracted using integration of RNAseq data with protein-protein interaction (PPI) networks (<a href="https://doi.org/10.1089/omi.2022.0023">Yurduseven and Babal et al. 2022</a>).
</p>
</div>
</div>
</div>
<hr>
<div class="w3-panel w3-cell w3-mobile" id="publication">
<div class="w3-container w3-cell w3-mobile">
<h2 class="w3-text-orange">Publications</h2>
<p>Babal, Y. K., Kandemir, B., & Kurnaz, I. A. (2021). Gene Regulatory Network of ETS Domain Transcription Factors in Different Stages of Glioma. Journal of personalized medicine, 11(2), 138.
<a href="https://doi.org/10.3390/jpm11020138">https://doi.org/10.3390/jpm11020138</a>
</p>
<p>Yurduseven, K., Babal, Y. K., Celik, E., Kerman, B. E., & Kurnaz, I. A. (2022). Multiple Sclerosis Biomarker Candidates Revealed by Cell-Type-Specific Interactome Analysis. Omics : a journal of integrative biology, 26(5), 305–317.
<a href="https://doi.org/10.1089/omi.2022.0023">https://doi.org/10.1089/omi.2022.0023</a>
</p>
</div>
</div>
</div>
</div>
<footer class="w3-center w3-dark-gray w3-padding w3-bottom">
<a href="https://github.com/yigitbabal" class="fa fa-copyright" style="text-decoration: none;"> Yigit Koray Babal</a>
</footer>
<script>
function accord(id) {
var x = document.getElementById(id);
if (x.className.indexOf("w3-show") == -1) {
x.className += " w3-show";
} else {
x.className = x.className.replace(" w3-show", "");
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</body>
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