software.Rmd

---
title: "Software"
---

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Main: [Github profile](https://github.com/yjunechoe), [R-universe profile](https://yjunechoe.r-universe.dev/builds)

## ggtrace

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Role: Maintainer, Author

Language: R

Links: [Github](https://github.com/yjunechoe/ggtrace), [website](yjunechoe.github.io/ggtrace), talks ([useR! 2022](https://www.youtube.com/watch?v=2JX8zu4QxMg&t=2959s), [rstudio::conf 2022](https://www.rstudio.com/conference/2022/talks/cracking-open-ggplot-internals-ggtrace/)), [paper](https://yjunechoe.github.io/static/papers/Choe_2022_SublayerGG.pdf)

> Programmatically explore, debug, and manipulate ggplot internals. Package {ggtrace} offers a low-level interface that extends base R capabilities of trace, as well as a family of workflow functions that make interactions with ggplot internals more accessible.


## jlmerclusterperm

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Role: Maintainer, Author

Language: R, Julia

Links: [CRAN](https://cran.r-project.org/package=jlmerclusterperm), [Github](https://github.com/yjunechoe/jlmerclusterperm/), [website](https://yjunechoe.github.io/jlmerclusterperm/)

> An implementation of fast cluster-based permutation analysis (CPA) for densely-sampled time data developed in [Maris & Oostenveld (2007)](doi:10.1016/j.jneumeth.2007.03.024). Supports (generalized, mixed-effects) regression models for the calculation of timewise statistics. Provides both a wholesale and a piecemeal interface to the CPA procedure with an emphasis on interpretability and diagnostics. Integrates Julia libraries MixedModels.jl and GLM.jl for performance improvements, with additional functionalities for interfacing with Julia from 'R' powered by the JuliaConnectoR package.

## pointblank

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Role: Author

Language: R, HTML/CSS, Javascript

Links: [Github](https://github.com/rstudio/pointblank), [website](https://rstudio.github.io/pointblank/)

> Data quality assessment and metadata reporting for data frames and database tables


## openalexR

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Role: Author

Language: R

Links: [Github](https://github.com/ropensci/openalexR), [website](https://docs.ropensci.org/openalexR/)

> A set of tools to extract bibliographic content from the OpenAlex database using API https://docs.openalex.org.


## jlme

Role: Author, Maintainer

Language: R, Julia

Links: [Github](https://github.com/yjunechoe/jlme), [website](https://yjunechoe.github.io/jlme/)

> Julia (mixed-effects) regression modelling from R. Powered by the {JuliaConnectoR} R package and Julia libraries GLM, StatsModels, and MixedModels.


## ggcolormeter

Role: Maintainer, Author

Language: R

Links: [Github](https://github.com/yjunechoe/ggcolormeter)

> {ggcolormeter} adds guide_colormeter(), a {ggplot2} color/fill legend guide extension in the style of a dashboard meter.


## Snowglobe (retired)

Role: Maintainer, Author

Language: R, SQL

Links: [Github](https://github.com/yjunechoe/Snowglobe), [OSF](https://osf.io/u25rn/), [poster](https://yjunechoe.github.io/static/poster/Snowballer_June_Choe.pdf)

> An iterative search tool for systematic reviews and meta-analyses, implemented as a Shiny app. Retired due to the [discontinuation of the Microsoft Academic Graph](https://www.microsoft.com/en-us/research/project/academic/articles/microsoft-academic-to-expand-horizons-with-community-driven-approach/) service in 2021. I now contribute to {openalexR}.


## Other contributions

I am listed as a contributor in:

- [JuliaConnectoR](https://github.com/stefan-m-lenz/JuliaConnectoR)

- [reactablefmtr](https://github.com/kcuilla/reactablefmtr/)

- [ddplot](https://github.com/feddelegrand7/ddplot/)


I have also contributed via PRs to:

- [ggplot2](https://github.com/tidyverse/ggplot2/)

- [fda](https://github.com/JamesRamsay5/fda)