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TODO.md

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  • Yield jobs to start downloading from the beginning
  • Saving already downloaded files: Create a downloaded files register to avoid downloading multiple time the same file.
  • Extend NCBI downloads to other data type than genomes
  • Extend ENA downloads to other data types than raw reads
  • NCBI: Use the output of datasets on wrong accession number to remove the bad accessions only (See how it is recursively done in SRA)
  • Change the delay functions to hold an amount of query per second, not a fix delay
  • Add url support for s3
  • Add url support for gs
  • Allow download path hierarchy