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gatk4_seto_env.yml
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gatk4_seto_env.yml
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name: nf-env
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- alsa-lib=1.2.8=h166bdaf_0
- binutils_impl_linux-64=2.40=hf600244_0
- bwa=0.7.17=he4a0461_11
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.5.7=hbcca054_0
- cairo=1.16.0=hbbf8b49_1016
- coreutils=9.3=h0b41bf4_0
- curl=7.88.1=hdc1c0ab_1
- expat=2.5.0=hcb278e6_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- gatk4=4.4.0.0=py36hdfd78af_0
- gcc_impl_linux-64=13.1.0=hc4be1a9_0
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=13.1.0=hd511a9b_0
- giflib=5.2.1=h0b41bf4_3
- graphite2=1.3.13=h58526e2_1001
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=13.1.0=hc4be1a9_0
- harfbuzz=7.3.0=hdb3a94d_0
- htslib=1.10=h244ad75_0
- icu=72.1=hcb278e6_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- krb5=1.20.1=h81ceb04_0
- lcms2=2.15=haa2dc70_1
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=17_linux64_openblas
- libcblas=3.9.0=17_linux64_openblas
- libcups=2.3.3=h36d4200_3
- libcurl=7.88.1=hdc1c0ab_1
- libdeflate=1.18=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=13.1.0=he3cc6c4_0
- libgcc-ng=13.1.0=he5830b7_0
- libgfortran-ng=13.1.0=h69a702a_0
- libgfortran5=13.1.0=h15d22d2_0
- libglib=2.76.3=hebfc3b9_0
- libgomp=13.1.0=he5830b7_0
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=h0b41bf4_0
- liblapack=3.9.0=17_linux64_openblas
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.23=pthreads_h80387f5_0
- libpng=1.6.39=h753d276_0
- libsanitizer=13.1.0=hfd8a6a1_0
- libsqlite=3.42.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=13.1.0=he3cc6c4_0
- libstdcxx-ng=13.1.0=hfd8a6a1_0
- libtiff=4.5.1=h8b53f26_0
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.1=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libxml2=2.10.4=hfdac1af_0
- libzlib=1.2.13=hd590300_5
- make=4.3=hd18ef5c_1
- ncurses=6.4=hcb278e6_0
- nextflow=22.10.6=h4a94de4_0
- openjdk=17.0.3=h19c1b89_7
- openssl=3.1.1=hd590300_1
- pango=1.50.14=heaa33ce_1
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=2_h7f98852_perl5
- picard=2.18.29=0
- pip=23.1.2=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pthread-stubs=0.4=h36c2ea0_1001
- python=3.11.4=hab00c5b_0_cpython
- r-base=4.2.3=h4a03800_2
- readline=8.2=h8228510_1
- samtools=1.6=hc3601fc_10
- sed=4.8=he412f7d_0
- setuptools=68.0.0=pyhd8ed1ab_0
- sysroot_linux-64=2.12=he073ed8_15
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- tree=2.1.1=hd590300_0
- tzdata=2023c=h71feb2d_0
- wheel=0.40.0=pyhd8ed1ab_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.6=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.3.0=hd590300_0
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.2=h3eb15da_6
prefix: /scratch/pawsey0399/yjia/tools/miniconda3/envs/nf-env