singularity_from_conda.txt

conda env export > environment.yml

## create singularity description file: singularity

Bootstrap: docker
From: continuumio/miniconda3   # Use the base Docker image that includes Conda

%files
    # Mount your local file inside the container
    /data/tools/conda_env_export/cnvpytor.yml /etc/cnvpytor.yml

%environment
    export PATH="/opt/conda/bin:$PATH"
%post
    conda env create --file environment.yml

### build singularity container
sudo singularity build my_container.sif Singularity