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CellPhoneDB Resources

PPI resources:

  • IUPHAR
  • iMEX Orchard S et al., Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nat Methods. 2012 Apr;9(4):345-50.
  • Intact Orchard S et al., The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Research 42: D358-63 (2013)
  • InnateDB Breuer et al., InnateDB: systems biology of innate immunity and beyond - recent updates and continuing curation. Nucleic Acids Research 41:D1 (2013)
  • DIP Salwinski L, et al., The Database of Interacting Proteins: 2004 update. Nucleic Acids Research 32:D449-51 (2004)
  • MINT Licata L, et al., MINT, the molecular interaction database: 2012 update. Nucleic Acids Research 40:D857-61 (2012)
  • I2D Brown, K.R., and Jurisica, I. Unequal evolutionary conservation of human protein interactions in interologous networks. Genome Biology, 8(5):R95 (2007)
  • MatrixDB Launay G et al., MatrixDB, the extracellular matrix interaction database: updated content, a new navigator and expanded functionalities. Nucleic Acids Research 43:D321-7 (2015)
  • HPIDB HPIDB 2.0: a curated database for host–pathogen interactions. Ammari MG Database, Volume 2016 (2016)

Other resources:

  • Uniprot UniProt: the universal protein knowledgebase. The UniProt Consortium. Nucleic Acids Research 45: D158-D169 (2017)
  • Ensembl Ensembl 2018. Zerbino DR et al.,. Nucleic Acids Research 46: D754–D761 (2018)
  • PDB Rose PW et al., The RCSB protein data bank: integrative view of protein, gene and 3D structural information Nucleic Acids Research, 45: D271-D281 (2017)