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0.11.0: pep517 based build fails #418

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kloczek opened this issue Jan 16, 2023 · 5 comments
Open

0.11.0: pep517 based build fails #418

kloczek opened this issue Jan 16, 2023 · 5 comments

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@kloczek
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kloczek commented Jan 16, 2023

numcodecs pep517 build fails

+ /usr/bin/python3 -sBm build -w --no-isolation
* Getting build dependencies for wheel...
[numcodecs] setting up Blosc extension
[numcodecs] compiling Blosc extension with SSE2 support
Traceback (most recent call last):
  File "/usr/lib/python3.8/site-packages/pep517/in_process/_in_process.py", line 351, in <module>
    main()
  File "/usr/lib/python3.8/site-packages/pep517/in_process/_in_process.py", line 333, in main
    json_out['return_val'] = hook(**hook_input['kwargs'])
  File "/usr/lib/python3.8/site-packages/pep517/in_process/_in_process.py", line 118, in get_requires_for_build_wheel
    return hook(config_settings)
  File "/usr/lib/python3.8/site-packages/setuptools/build_meta.py", line 338, in get_requires_for_build_wheel
    return self._get_build_requires(config_settings, requirements=['wheel'])
  File "/usr/lib/python3.8/site-packages/setuptools/build_meta.py", line 320, in _get_build_requires
    self.run_setup()
  File "/usr/lib/python3.8/site-packages/setuptools/build_meta.py", line 335, in run_setup
    exec(code, locals())
  File "<string>", line 254, in <module>
  File "<string>", line 237, in run_setup
  File "<string>", line 69, in blosc_extension
UnboundLocalError: local variable 'blosc_sources' referenced before assignment
@jakirkham
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Need to checkout the git submodules as well. Would run this in the source directory

git submodule update --init --recursive

@kloczek kloczek mentioned this issue Feb 14, 2024
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@kloczek
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kloczek commented Feb 14, 2024

Do you have any plans provide build numcodecs against against shared system installed libblosc? 🤔

@jakirkham
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@kloczek could you please try the above suggestion and let us know how it goes?

@kloczek
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kloczek commented Feb 14, 2024

BTW in mean time I found that Fedora has full set of patches unbundling not only blosc but zstd and lz4 as well https://src.fedoraproject.org/rpms/python-numcodecs
I think that it would be good merge those patches here.

@kloczek
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kloczek commented Feb 14, 2024

With those patches it is possible to build numcodecs against all those shared libraries.
Additionally just found that with LTO was possible to expose on code issue. There are as well other warnings.
Look on below output

+ /usr/bin/python3 -sBm build -w --no-isolation
* Getting build dependencies for wheel...
[numcodecs] setting up Blosc extension
[numcodecs] setting up Zstandard extension
[numcodecs] setting up LZ4 extension
[numcodecs] setting up compat extension
[numcodecs] setting up shuffle extension
[numcodecs] setting up vlen extension
[numcodecs] setting up fletcher32 extension
[numcodecs] setting up jenkins extension
running egg_info
creating numcodecs.egg-info
writing numcodecs.egg-info/PKG-INFO
writing dependency_links to numcodecs.egg-info/dependency_links.txt
writing requirements to numcodecs.egg-info/requires.txt
writing top-level names to numcodecs.egg-info/top_level.txt
writing manifest file 'numcodecs.egg-info/SOURCES.txt'
reading manifest file 'numcodecs.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'numcodecs.egg-info/SOURCES.txt'
* Building wheel...
[numcodecs] setting up Blosc extension
[numcodecs] setting up Zstandard extension
[numcodecs] setting up LZ4 extension
[numcodecs] setting up compat extension
[numcodecs] setting up shuffle extension
[numcodecs] setting up vlen extension
[numcodecs] setting up fletcher32 extension
[numcodecs] setting up jenkins extension
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-cpython-38
creating build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/__init__.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/abc.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/astype.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/base64.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/bitround.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/bz2.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/categorize.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/checksum32.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/compat.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/delta.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/fixedscaleoffset.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/gzip.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/json.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/lzma.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/msgpacks.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/ndarray_like.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/packbits.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/pickles.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/quantize.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/registry.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/shuffle.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/zfpy.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/zlib.py -> build/lib.linux-x86_64-cpython-38/numcodecs
copying ./numcodecs/version.py -> build/lib.linux-x86_64-cpython-38/numcodecs
creating build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/__init__.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/common.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_astype.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_base64.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_bitround.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_bz2.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_categorize.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_checksum32.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_compat.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_delta.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_entrypoints.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_entrypoints_backport.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_fixedscaleoffset.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_fletcher32.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_gzip.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_jenkins.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_json.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_lz4.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_lzma.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_msgpacks.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_ndarray_like.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_packbits.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_pickles.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_quantize.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_registry.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_shuffle.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_vlen_array.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_vlen_bytes.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_vlen_utf8.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_zfpy.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_zlib.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_zstd.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
copying ./numcodecs/tests/test_blosc.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests
running egg_info
writing numcodecs.egg-info/PKG-INFO
writing dependency_links to numcodecs.egg-info/dependency_links.txt
writing requirements to numcodecs.egg-info/requires.txt
writing top-level names to numcodecs.egg-info/top_level.txt
reading manifest file 'numcodecs.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'numcodecs.egg-info/SOURCES.txt'
creating build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint
copying ./numcodecs/tests/package_with_entrypoint/__init__.py -> build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint
creating build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint-0.1.dist-info
copying ./numcodecs/tests/package_with_entrypoint-0.1.dist-info/entry_points.txt -> build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint-0.1.dist-info
running build_ext
Compiling numcodecs/blosc.pyx because it changed.
[1/1] Cythonizing numcodecs/blosc.pyx
building 'numcodecs.blosc' extension
creating build/temp.linux-x86_64-cpython-38
creating build/temp.linux-x86_64-cpython-38/numcodecs
/usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -I/usr/include/python3.8 -c numcodecs/blosc.c -o build/temp.linux-x86_64-cpython-38/numcodecs/blosc.o
In function ‘__pyx_pf_9numcodecs_5blosc_20compress’,
    inlined from ‘__pyx_pw_9numcodecs_5blosc_21compress’ at numcodecs/blosc.c:5254:13:
numcodecs/blosc.c:6051:6: warning: ‘__pyx_v_cbytes’ may be used uninitialized [-Wmaybe-uninitialized]
 6051 |   if (unlikely(__pyx_t_6)) {
      |      ^
numcodecs/blosc.c: In function ‘__pyx_pw_9numcodecs_5blosc_21compress’:
numcodecs/blosc.c:5273:7: note: ‘__pyx_v_cbytes’ was declared here
 5273 |   int __pyx_v_cbytes;
      |       ^~~~~~~~~~~~~~
/usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/blosc.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/blosc.cpython-38-x86_64-linux-gnu.so -lblosc
Compiling numcodecs/zstd.pyx because it changed.
[1/1] Cythonizing numcodecs/zstd.pyx
building 'numcodecs.zstd' extension
/usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -I/usr/include/python3.8 -c numcodecs/zstd.c -o build/temp.linux-x86_64-cpython-38/numcodecs/zstd.o
numcodecs/zstd.c: In function ‘__pyx_pf_9numcodecs_4zstd_2decompress’:
numcodecs/zstd.c:3622:5: warning: ‘ZSTD_getDecompressedSize’ is deprecated [-Wdeprecated-declarations]
 3622 |     __pyx_v_dest_size = ZSTD_getDecompressedSize(__pyx_v_source_ptr, __pyx_v_source_size);
      |     ^~~~~~~~~~~~~~~~~
In file included from numcodecs/zstd.c:1205:
/usr/include/zstd.h:203:20: note: declared here
  203 | unsigned long long ZSTD_getDecompressedSize(const void* src, size_t srcSize);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~
/usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/zstd.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/zstd.cpython-38-x86_64-linux-gnu.so -lzstd
Compiling numcodecs/lz4.pyx because it changed.
[1/1] Cythonizing numcodecs/lz4.pyx
building 'numcodecs.lz4' extension
/usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -I/usr/include/python3.8 -c numcodecs/lz4.c -o build/temp.linux-x86_64-cpython-38/numcodecs/lz4.o
/usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/lz4.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/lz4.cpython-38-x86_64-linux-gnu.so -llz4
Compiling numcodecs/compat_ext.pyx because it changed.
[1/1] Cythonizing numcodecs/compat_ext.pyx
building 'numcodecs.compat_ext' extension
/usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -I/usr/include/python3.8 -c numcodecs/compat_ext.c -o build/temp.linux-x86_64-cpython-38/numcodecs/compat_ext.o
/usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/compat_ext.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/compat_ext.cpython-38-x86_64-linux-gnu.so
Compiling numcodecs/_shuffle.pyx because it changed.
[1/1] Cythonizing numcodecs/_shuffle.pyx
building 'numcodecs._shuffle' extension
/usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -I/usr/include/python3.8 -c numcodecs/_shuffle.c -o build/temp.linux-x86_64-cpython-38/numcodecs/_shuffle.o
/usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/_shuffle.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/_shuffle.cpython-38-x86_64-linux-gnu.so
Compiling numcodecs/vlen.pyx because it changed.
[1/1] Cythonizing numcodecs/vlen.pyx
building 'numcodecs.vlen' extension
/usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -Inumcodecs -I/usr/include/python3.8 -c numcodecs/vlen.c -o build/temp.linux-x86_64-cpython-38/numcodecs/vlen.o
/usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/vlen.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/vlen.cpython-38-x86_64-linux-gnu.so
Compiling numcodecs/fletcher32.pyx because it changed.
[1/1] Cythonizing numcodecs/fletcher32.pyx
building 'numcodecs.fletcher32' extension
/usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -Inumcodecs -I/usr/include/python3.8 -c numcodecs/fletcher32.c -o build/temp.linux-x86_64-cpython-38/numcodecs/fletcher32.o
/usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/fletcher32.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/fletcher32.cpython-38-x86_64-linux-gnu.so
Compiling numcodecs/jenkins.pyx because it changed.
[1/1] Cythonizing numcodecs/jenkins.pyx
building 'numcodecs.jenkins' extension
/usr/bin/gcc -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -D_GNU_SOURCE -fPIC -fwrapv -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -D_GNU_SOURCE -fPIC -fwrapv -ffat-lto-objects -fno-semantic-interposition -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security -fPIC -DCYTHON_TRACE=1 -Inumcodecs -I/usr/include/python3.8 -c numcodecs/jenkins.c -o build/temp.linux-x86_64-cpython-38/numcodecs/jenkins.o
/usr/bin/gcc -shared -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--gc-sections -Wl,--as-needed -Wl,--build-id=sha1 -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -Wl,-z,pack-relative-relocs -flto=auto -fuse-linker-plugin -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -O2 -g -grecord-gcc-switches -pipe -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fdata-sections -ffunction-sections -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -flto=auto -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -Wall -Werror=format-security build/temp.linux-x86_64-cpython-38/numcodecs/jenkins.o -L/usr/lib64 -o build/lib.linux-x86_64-cpython-38/numcodecs/jenkins.cpython-38-x86_64-linux-gnu.so
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/__init__.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/abc.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/astype.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/base64.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/bitround.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/bz2.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/categorize.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/checksum32.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/compat.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/delta.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/fixedscaleoffset.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/gzip.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/json.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/lzma.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/msgpacks.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/ndarray_like.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/packbits.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/pickles.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/quantize.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/registry.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/shuffle.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/zfpy.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/zlib.py -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/version.py -> build/bdist.linux-x86_64/wheel/numcodecs
creating build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/__init__.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/common.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_astype.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_base64.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_bitround.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_bz2.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_categorize.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_checksum32.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_compat.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_delta.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_entrypoints.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_entrypoints_backport.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_fixedscaleoffset.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_fletcher32.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_gzip.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_jenkins.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_json.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_lz4.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_lzma.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_msgpacks.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_ndarray_like.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_packbits.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_pickles.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_quantize.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_registry.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_shuffle.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_vlen_array.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_vlen_bytes.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_vlen_utf8.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_zfpy.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_zlib.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_zstd.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/test_blosc.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests
creating build/bdist.linux-x86_64/wheel/numcodecs/tests/package_with_entrypoint
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint/__init__.py -> build/bdist.linux-x86_64/wheel/numcodecs/tests/package_with_entrypoint
creating build/bdist.linux-x86_64/wheel/numcodecs/tests/package_with_entrypoint-0.1.dist-info
copying build/lib.linux-x86_64-cpython-38/numcodecs/tests/package_with_entrypoint-0.1.dist-info/entry_points.txt -> build/bdist.linux-x86_64/wheel/numcodecs/tests/package_with_entrypoint-0.1.dist-info
copying build/lib.linux-x86_64-cpython-38/numcodecs/blosc.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/zstd.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/lz4.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/compat_ext.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/_shuffle.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/vlen.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/fletcher32.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs
copying build/lib.linux-x86_64-cpython-38/numcodecs/jenkins.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/numcodecs
running install_egg_info
Copying numcodecs.egg-info to build/bdist.linux-x86_64/wheel/numcodecs-0.12.1-py3.8.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/numcodecs-0.12.1.dist-info/WHEEL
creating '/home/tkloczko/rpmbuild/BUILD/numcodecs-0.12.1/dist/.tmp-puda15j3/numcodecs-0.12.1-cp38-cp38-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'numcodecs/__init__.py'
adding 'numcodecs/_shuffle.cpython-38-x86_64-linux-gnu.so'
adding 'numcodecs/abc.py'
adding 'numcodecs/astype.py'
adding 'numcodecs/base64.py'
adding 'numcodecs/bitround.py'
adding 'numcodecs/blosc.cpython-38-x86_64-linux-gnu.so'
adding 'numcodecs/bz2.py'
adding 'numcodecs/categorize.py'
adding 'numcodecs/checksum32.py'
adding 'numcodecs/compat.py'
adding 'numcodecs/compat_ext.cpython-38-x86_64-linux-gnu.so'
adding 'numcodecs/delta.py'
adding 'numcodecs/fixedscaleoffset.py'
adding 'numcodecs/fletcher32.cpython-38-x86_64-linux-gnu.so'
adding 'numcodecs/gzip.py'
adding 'numcodecs/jenkins.cpython-38-x86_64-linux-gnu.so'
adding 'numcodecs/json.py'
adding 'numcodecs/lz4.cpython-38-x86_64-linux-gnu.so'
adding 'numcodecs/lzma.py'
adding 'numcodecs/msgpacks.py'
adding 'numcodecs/ndarray_like.py'
adding 'numcodecs/packbits.py'
adding 'numcodecs/pickles.py'
adding 'numcodecs/quantize.py'
adding 'numcodecs/registry.py'
adding 'numcodecs/shuffle.py'
adding 'numcodecs/version.py'
adding 'numcodecs/vlen.cpython-38-x86_64-linux-gnu.so'
adding 'numcodecs/zfpy.py'
adding 'numcodecs/zlib.py'
adding 'numcodecs/zstd.cpython-38-x86_64-linux-gnu.so'
adding 'numcodecs/tests/__init__.py'
adding 'numcodecs/tests/common.py'
adding 'numcodecs/tests/test_astype.py'
adding 'numcodecs/tests/test_base64.py'
adding 'numcodecs/tests/test_bitround.py'
adding 'numcodecs/tests/test_blosc.py'
adding 'numcodecs/tests/test_bz2.py'
adding 'numcodecs/tests/test_categorize.py'
adding 'numcodecs/tests/test_checksum32.py'
adding 'numcodecs/tests/test_compat.py'
adding 'numcodecs/tests/test_delta.py'
adding 'numcodecs/tests/test_entrypoints.py'
adding 'numcodecs/tests/test_entrypoints_backport.py'
adding 'numcodecs/tests/test_fixedscaleoffset.py'
adding 'numcodecs/tests/test_fletcher32.py'
adding 'numcodecs/tests/test_gzip.py'
adding 'numcodecs/tests/test_jenkins.py'
adding 'numcodecs/tests/test_json.py'
adding 'numcodecs/tests/test_lz4.py'
adding 'numcodecs/tests/test_lzma.py'
adding 'numcodecs/tests/test_msgpacks.py'
adding 'numcodecs/tests/test_ndarray_like.py'
adding 'numcodecs/tests/test_packbits.py'
adding 'numcodecs/tests/test_pickles.py'
adding 'numcodecs/tests/test_quantize.py'
adding 'numcodecs/tests/test_registry.py'
adding 'numcodecs/tests/test_shuffle.py'
adding 'numcodecs/tests/test_vlen_array.py'
adding 'numcodecs/tests/test_vlen_bytes.py'
adding 'numcodecs/tests/test_vlen_utf8.py'
adding 'numcodecs/tests/test_zfpy.py'
adding 'numcodecs/tests/test_zlib.py'
adding 'numcodecs/tests/test_zstd.py'
adding 'numcodecs/tests/package_with_entrypoint/__init__.py'
adding 'numcodecs-0.12.1.dist-info/LICENSE.txt'
adding 'numcodecs-0.12.1.dist-info/METADATA'
adding 'numcodecs-0.12.1.dist-info/WHEEL'
adding 'numcodecs-0.12.1.dist-info/top_level.txt'
adding 'numcodecs/tests/package_with_entrypoint-0.1.dist-info/entry_points.txt'
adding 'numcodecs-0.12.1.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
/usr/lib/python3.8/site-packages/setuptools/command/build_py.py:207: _Warning: Package 'numcodecs.tests.package_with_entrypoint' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'numcodecs.tests.package_with_entrypoint' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'numcodecs.tests.package_with_entrypoint' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'numcodecs.tests.package_with_entrypoint' to be distributed and are
        already explicitly excluding 'numcodecs.tests.package_with_entrypoint' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
Successfully built numcodecs-0.12.1-cp38-cp38-linux_x86_64.whl

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@jakirkham @kloczek