Using a count matrix with NA values for GSEApy

[LeilyR]

Hi,
I would like to use gsea function on a count matrix with NA. This is allowed by GSEA itself but I seem to not be able to use your tool when I have missing values. Do you have an option to ignore missing values, the way GSEA does. Thanks!

[zqfang]

I'm sorry, so far NaN is allowed in the input data (this is because of the rust backend). in your count matrix case, you can fill NA with 0.