move all clonotype printing code into this repo (#550)

Pull all enclone_print code into this repo.
Pull in mammalian_fixed_len.
Update to keep stats internal to enclone.
Rename enclone_print -> enclone_process.
Remove export_code test.

Cargo.toml

@@ -93,7 +93,7 @@ enclone_core = { git = "https://github.com/10XGenomics/enclone_ranger", branch =
 enclone_denovo = { path = "../enclone_denovo" }
 enclone_help = { path = "../enclone_help" }
 enclone = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "main" }
-enclone_print = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "main" }
+enclone_process = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "main" }
 enclone_proto = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "main" }
 enclone_ranger = { git = "https://github.com/10XGenomics/enclone_ranger", branch = "main" }
 enclone_server_proto = { path = "../enclone_server_proto" }

enclone_exec/tests/enclone_test4.rs

@@ -5,7 +5,6 @@
 use enclone_core::defs::*;
 use enclone_main::main_enclone::main_enclone;
 use enclone_ranger::main_enclone::main_enclone_ranger;
-use enclone_vars::export_code::*;
 use enclone_vars::var::*;
 use enclone_vars::*;
 use io_utils::*;
@@ -578,28 +577,6 @@ fn test_unpushed() {
 
 // ▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓
 
-// 40. Test to see that export_code has been run.
-// An attempt to make this basic failed.
-
-// NOT BASIC
-
-#[cfg(not(feature = "basic"))]
-#[cfg(not(feature = "cpu"))]
-#[test]
-fn test_export_code() {
-    let outs = export_code(1);
-    for i in 0..outs.len() {
-        let f = format!("../{}", outs[i].0);
-        let current = std::fs::read_to_string(&f).unwrap();
-        if outs[i].1 != current {
-            eprintln!("\nexport_code output {} has changed.\n", outs[i].0);
-            panic!("failed");
-        }
-    }
-}
-
-// ▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓▓
-
 // 41. Test a funny command with a newline that asserted at one point.
 // An attempt to make this basic failed.
 

enclone_main/Cargo.toml

@@ -21,7 +21,7 @@ publish = false
 dirs.workspace = true
 enclone_core.workspace = true
 enclone_help = { path = "../enclone_help" }
-enclone_print.workspace = true
+enclone_process.workspace = true
 enclone_proto.workspace = true
 enclone_stuff.workspace = true
 enclone_tail = { path = "../enclone_tail" }