Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

refactor: extract configuration, remove dead code #555

Closed
wants to merge 31 commits into from
Closed

refactor: extract configuration, remove dead code #555

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
31 commits
Select commit Hold shift + click to select a range
aef4355
Start extracting cellranger-related args.
macklin-10x Apr 5, 2024
07fb98a
Update usage of cellranger opts.
macklin-10x Apr 7, 2024
bfa4487
Remove the dead NO_KILL feature.
macklin-10x Apr 7, 2024
b53b2bd
Clean up NOPAGER and NOPRETTY.
macklin-10x Apr 7, 2024
8d7fe72
Move pager into enclone.
macklin-10x Apr 7, 2024
a57ac1b
Scope NOPAGER to just the setup method.
macklin-10x Apr 7, 2024
65921fa
Remove dead comment.
macklin-10x Apr 7, 2024
bb9279b
Move NUMI into cr_opts.
macklin-10x Apr 16, 2024
73df8dd
Move NUMI_RATIO into cr_opts.
macklin-10x Apr 16, 2024
3ac7551
Move REF into cr_opts.
macklin-10x Apr 16, 2024
d443c34
Move PRE= into cr_opts.
macklin-10x Apr 16, 2024
2eeeaca
Move NGRAPH_FILTER into cr_opts.
macklin-10x Apr 17, 2024
dec2eec
Move NWEAK_CHAINS into cr_opts.
macklin-10x Apr 17, 2024
c7154b5
Move NFOURSIE_KILL into cr_opts.
macklin-10x Apr 17, 2024
81974af
Move NDOUBLET into cr_opts.
macklin-10x Apr 17, 2024
83dd898
Move NSIG into cr_opts.
macklin-10x Apr 17, 2024
9ff1657
Remove write to a never-read data structure.
macklin-10x Apr 18, 2024
c610b26
Remove never-completed EXT functionality.
macklin-10x Apr 18, 2024
a7746af
Delete dead visual help page.
macklin-10x Apr 18, 2024
49a6849
Remove unused AG_DIST_FORMULA parameter.
macklin-10x Apr 18, 2024
03ec62d
Move nogray into clono_print_opts.
macklin-10x Apr 18, 2024
215f75d
Move more print options into ClonoPrintOpt.
macklin-10x Apr 18, 2024
d23ee7c
Remove population of never-read pathlist and last_modified.
macklin-10x Apr 18, 2024
91e3f67
Point back to feature branch.
macklin-10x Apr 18, 2024
f940551
Update enclone_ranger.
macklin-10x Apr 18, 2024
61ae869
Update enclone_ranger.
macklin-10x Apr 29, 2024
c28bfc2
Update enclone_ranger.
macklin-10x Apr 29, 2024
3472932
Only override PRE if it was not set.
macklin-10x Apr 29, 2024
b5288a6
Update enclone_ranger.
macklin-10x Apr 29, 2024
1979884
Update help pages.
macklin-10x Apr 29, 2024
4c992a5
Skip the help test.
macklin-10x Apr 29, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
62 changes: 32 additions & 30 deletions Cargo.lock
View file
Open in desktop

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

Loading