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Checks for resolution in Hi-C and missing signal fix in lmi.py
- prep.py now checks for chromosome nomenclature for both cooler and hic format. It now also checks that the given resolution for binnarizing the signal is in the Hi-C file. - lmi.py now checks if the signals you are computing are in the signals previously binnarized with prep.py. If not, warns the user and tells which signals are missing. - Added fix to missing data in signal. Until now, it was being converted to 0 and the missing signals were clustered at the end of the region. Now, the missing signals are equal to the median of the signal of that region.
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Leo Zuber
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Jul 18, 2023
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