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4DGenome

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  1. Chromosomal-Conformation-Course Chromosomal-Conformation-Course Public

    Bioinformatic material related to the course

    Jupyter Notebook 3 3

  2. binless binless Public

    Forked from 3DGenomes/binless

    Resolution-independent normalization of Hi-C data

  3. parallel_sequencing_lives parallel_sequencing_lives Public

    Didactic dataset of the _"Parallel sequencing lives, or what makes large sequencing projects successful"_ manuscript.

    HTML 3 1

  4. TADbit TADbit Public

    Forked from 3DGenomes/TADbit

    TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like…

    Python 1

  5. TADkit TADkit Public

    Forked from 3DGenomes/TADkit

    3D Genome Browser

    JavaScript

  6. dryhic dryhic Public

    Forked from qenvio/dryhic

    R

Repositories

Showing 10 of 11 repositories
  • pipelines Public
    4DGenome/pipelines’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 13, 2020
  • binless Public Forked from 3DGenomes/binless

    Resolution-independent normalization of Hi-C data

    4DGenome/binless’s past year of commit activity
    0 2 0 0 Updated Mar 27, 2019
  • hicfeatures Public

    Genomic features for Hi-C experiments

    4DGenome/hicfeatures’s past year of commit activity
    R 0 0 0 0 Updated Oct 12, 2018
  • dryhic Public Forked from qenvio/dryhic
    4DGenome/dryhic’s past year of commit activity
    R 0 3 0 0 Updated May 25, 2018
  • TADbit Public Forked from 3DGenomes/TADbit

    TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models f…

    4DGenome/TADbit’s past year of commit activity
    Python 1 GPL-3.0 62 0 0 Updated Feb 15, 2018
  • TADkit Public Forked from 3DGenomes/TADkit

    3D Genome Browser

    4DGenome/TADkit’s past year of commit activity
    JavaScript 0 10 0 0 Updated Jan 18, 2018
  • bioinfo_course Public
    4DGenome/bioinfo_course’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 27, 2017
  • parallel_sequencing_lives Public

    Didactic dataset of the _"Parallel sequencing lives, or what makes large sequencing projects successful"_ manuscript.

    4DGenome/parallel_sequencing_lives’s past year of commit activity
    HTML 3 MIT 1 0 0 Updated Nov 17, 2017
  • conseq Public
    4DGenome/conseq’s past year of commit activity
    HTML 2 0 0 0 Updated May 12, 2017
  • Chromosomal-Conformation-Course Public

    Bioinformatic material related to the course

    4DGenome/Chromosomal-Conformation-Course’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 3 0 0 Updated Apr 12, 2017
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