fixed bug when detecting variables from different realms at once

src/mopdb/mopdb.py

@@ -403,7 +403,7 @@ def write_intake(ctx, fpath, match, filelist, dbname, version, alias):
     if fpath.is_file():
         mopdb_log.error(f"""   {fpath} 
         should be absolute or relative path to model output.
-        To pass a varlist or map file use --filelist/-f""")
+        To pass a varlist or map file use --filelist/-fl""")
     elif filelist is None:
         mopdb_log.debug(f"Calling write_varlist() from intake: {fpath}")
         fname, vobjs, fobjs = write_varlist(conn, fpath, match, version, alias)

src/mopdb/mopdb_map.py

@@ -162,7 +162,7 @@ def write_varlist(conn, indir, match, version, alias):
         if fpattern in patterns:
             continue
         patterns.append(fpattern)
-        fobj = FPattern(fpattern, Path(indir))
+        fobj = FPattern(fpattern, fpath.parent)
         #pattern_list = list_files(indir, f"{fpattern}*")
         nfiles = len(fobj.files) 
         mopdb_log.debug(f"File pattern, number of files: {fpattern}, {nfiles}")

src/mopdb/mopdb_utils.py

@@ -364,7 +364,7 @@ def check_realm_units(conn, var):
 
 def get_realm(version, ds):
     '''Try to retrieve realm if using path failed'''
-
+    realm = 'NArealm'
     mopdb_log = logging.getLogger('mopdb_log')
     if version == 'AUS2200':
         realm = 'atmos'

src/mopper/calculations.py

@@ -813,9 +813,11 @@ def get_plev(ctx, levnum):
 @click.pass_context
 def plevinterp(ctx, var, pmod, levnum):
     """Interpolating var from model levels to pressure levels
-
+    
     _extended_summary_
 
+    Based on function from Dale Roberts (currently ANU)
+
     Parameters
     ----------
     var : Xarray DataArray