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update to 24.01
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@zingale
zingale committed Jan 2, 2024
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2 changes: 1 addition & 1 deletion external/Microphysics
Submodule Microphysics updated 83 files
+85 −0 .github/workflows/castro-development.yml
+78 −0 .github/workflows/check_powi.py
+37 −0 .github/workflows/check_powi.yml
+14 −3 .github/workflows/dependencies/dependencies_hip.sh
+34 −0 CHANGES.md
+2 −2 EOS/ztwd/actual_eos.H
+6 −6 conductivity/stellar/actual_conductivity.H
+3 −3 integration/RKC/rkc.H
+3 −2 integration/VODE/actual_integrator.H
+8 −0 integration/_parameters
+192 −118 integration/nse_update_simplified_sdc.H
+13 −15 integration/nse_update_strang.H
+1 −1 integration/utils/initial_timestep.H
+4 −4 integration/utils/rkc_util.H
+1 −25 interfaces/rhs_type.H
+7 −7 networks/CNO_extras/actual_rhs.H
+ − networks/CNO_extras/cno_extras.png
+ − networks/CNO_extras/cno_extras_hide_alpha.png
+6 −6 networks/ECSN/actual_rhs.H
+6 −6 networks/He-C-Fe-group/actual_network.H
+1 −1 networks/He-C-Fe-group/actual_network_data.cpp
+28 −28 networks/He-C-Fe-group/actual_rhs.H
+5 −5 networks/He-C-Fe-group/table_rates.H
+13 −13 networks/He-C-Fe-group/table_rates_data.cpp
+177,905 −46,201 networks/aprox19/nse_aprox19.tbl
+4 −4 networks/aprox19/nse_table_size.H
+20 −20 networks/ase/actual_rhs.H
+ − networks/ase/ase.png
+120 −120 networks/ase/partition_functions.H
+4 −4 networks/ase/reaclib_rates.H
+9 −9 networks/ignition_reaclib/C-burn-simple/actual_rhs.H
+13 −13 networks/ignition_reaclib/URCA-medium/actual_rhs.H
+ − networks/ignition_reaclib/URCA-medium/urca_medium.png
+9 −9 networks/ignition_reaclib/URCA-simple/actual_rhs.H
+1 −1 networks/iso7/actual_network.H
+4 −4 networks/nova/actual_rhs.H
+ − networks/nova/nova.png
+15 −15 networks/nova2/actual_rhs.H
+ − networks/nova2/nova.png
+15 −15 networks/partition_test/partition_functions.H
+271 −271 networks/primordial_chem/actual_rhs.H
+1 −0 networks/rhs.H
+110 −110 networks/sn160/actual_rhs.H
+20 −20 networks/subch_approx/actual_rhs.H
+ − networks/subch_approx/subch_approx.png
+20 −20 networks/subch_base/actual_rhs.H
+20 −20 networks/subch_full/actual_rhs.H
+ − networks/subch_full/subch_full.png
+20 −20 networks/subch_simple/actual_rhs.H
+ − networks/subch_simple/subch_simple.png
+2 −2 neutrinos/sneut5.H
+2 −0 nse_solver/_parameters
+13 −1 nse_solver/nse_check.H
+44 −0 nse_solver/nse_compatibility/GNUmakefile
+2 −0 nse_solver/nse_compatibility/Make.package
+14 −0 nse_solver/nse_compatibility/README.md
+22 −0 nse_solver/nse_compatibility/_parameters
+26 −0 nse_solver/nse_compatibility/inputs_nse_compatibility
+34 −0 nse_solver/nse_compatibility/main.cpp
+196 −0 nse_solver/nse_compatibility/nse_network_compatibility.H
+1 −0 nse_tabular/Make.package
+2 −2 nse_tabular/make_nse_table.py
+376 −0 nse_tabular/nse_eos.H
+287 −28 nse_tabular/nse_table.H
+47 −19 nse_tabular/nse_table_check.H
+23 −0 nse_tabular/nse_table_type.H
+3 −0 screening/_parameters
+230 −214 screening/screen.H
+52 −50 screening/screen_data.H
+10 −1 sphinx_docs/source/nse.rst
+4 −0 sphinx_docs/source/screening.rst
+43 −43 unit_test/burn_cell/ci-benchmarks/aprox19_nse_unit_test.out
+47 −46 unit_test/burn_cell/ci-benchmarks/subch_approx_BE_unit_test.out
+50 −49 unit_test/burn_cell/ci-benchmarks/subch_approx_unit_test.out
+4 −3 unit_test/test_nse/ci-benchmarks/aprox21_ci.out
+77 −44 unit_test/test_nse_interp/ci-benchmarks/aprox19.out
+1 −1 unit_test/test_nse_interp/main.cpp
+314 −20 unit_test/test_nse_interp/nse_cell.H
+2 −2 util/hybrj/hybrj.H
+5 −5 util/hybrj/hybrj_dogleg.H
+4 −4 util/hybrj/hybrj_enorm.H
+17 −22 util/linpack.H
+0 −1 util/microphysics_math.H
2 changes: 1 addition & 1 deletion external/amrex
Submodule amrex updated 93 files
+2 −2 .github/workflows/bittree.yml
+3 −3 .github/workflows/clang.yml
+4 −1 .github/workflows/cleanup-cache-postpr.yml
+8 −5 .github/workflows/cleanup-cache.yml
+1 −0 .github/workflows/codeql.yml
+2 −1 .github/workflows/dependencies/dependencies_hip.sh
+13 −13 .github/workflows/gcc.yml
+2 −2 .github/workflows/hypre.yml
+8 −4 .github/workflows/intel.yml
+1 −1 .github/workflows/petsc.yml
+1 −1 .github/workflows/smoke.yml
+1 −1 .github/workflows/sundials.yml
+50 −0 CHANGES
+41 −0 Docs/sphinx_documentation/source/AMReX_Profiling_Tools.rst
+19 −17 Docs/sphinx_documentation/source/GPU.rst
+6 −3 Docs/sphinx_documentation/source/LinearSolvers.rst
+5 −4 Docs/sphinx_documentation/source/Particle.rst
+1 −1 Docs/sphinx_documentation/source/conf.py
+0 −1 Src/Amr/AMReX_Amr.H
+0 −1 Src/Amr/AMReX_AmrLevel.H
+0 −2 Src/Amr/AMReX_Derive.H
+0 −1 Src/Amr/AMReX_LevelBld.H
+0 −1 Src/Amr/AMReX_StateData.H
+0 −2 Src/Amr/AMReX_StateDescriptor.H
+0 −1 Src/AmrCore/AMReX_AmrCore.H
+1 −1 Src/AmrCore/AMReX_AmrMesh.cpp
+0 −2 Src/AmrCore/AMReX_Cluster.H
+0 −2 Src/AmrCore/AMReX_ErrorList.H
+0 −1 Src/AmrCore/AMReX_FillPatcher.H
+0 −1 Src/AmrCore/AMReX_FluxRegister.H
+0 −1 Src/AmrCore/AMReX_InterpFaceRegister.H
+0 −11 Src/AmrCore/AMReX_Interpolater.H
+0 −2 Src/AmrCore/AMReX_TagBox.H
+5 −1 Src/Base/AMReX_Arena.H
+0 −1 Src/Base/AMReX_BArena.H
+2 −3 Src/Base/AMReX_BCRec.H
+24 −2 Src/Base/AMReX_BaseFab.H
+3 −5 Src/Base/AMReX_BoxDomain.H
+0 −1 Src/Base/AMReX_BoxList.H
+0 −1 Src/Base/AMReX_CArena.H
+0 −1 Src/Base/AMReX_CoordSys.H
+0 −1 Src/Base/AMReX_DistributionMapping.H
+0 −1 Src/Base/AMReX_FACopyDescriptor.H
+0 −1 Src/Base/AMReX_FPC.H
+5 −0 Src/Base/AMReX_FabArrayBase.H
+20 −0 Src/Base/AMReX_FabArrayBase.cpp
+187 −0 Src/Base/AMReX_FabArrayUtility.H
+8 −8 Src/Base/AMReX_Geometry.H
+1 −0 Src/Base/AMReX_GpuTypes.H
+0 −1 Src/Base/AMReX_IArrayBox.H
+0 −1 Src/Base/AMReX_IndexType.H
+0 −1 Src/Base/AMReX_IntVect.H
+24 −0 Src/Base/AMReX_Loop.H
+15 −15 Src/Base/AMReX_MultiFabUtil.H
+0 −1 Src/Base/AMReX_NFiles.H
+1 −1 Src/Base/AMReX_NonLocalBC.H
+0 −1 Src/Base/AMReX_Orientation.H
+5 −1 Src/Base/AMReX_PArena.H
+0 −1 Src/Base/AMReX_ParmParse.H
+0 −1 Src/Base/AMReX_ParmParse.cpp
+7 −1 Src/Base/AMReX_Random.cpp
+0 −1 Src/Base/AMReX_RealVect.H
+1 −2 Src/Base/AMReX_RungeKutta.H
+12 −0 Src/Base/AMReX_TypeTraits.H
+0 −1 Src/Base/AMReX_Vector.H
+0 −1 Src/Base/AMReX_VisMF.H
+0 −1 Src/Boundary/AMReX_BoundCond.H
+0 −1 Src/Boundary/AMReX_FabSet.H
+0 −1 Src/Boundary/AMReX_Mask.H
+0 −1 Src/Boundary/AMReX_YAFluxRegister.H
+0 −1 Src/EB/AMReX_EBFluxRegister.H
+0 −1 Src/Extern/Bittree/AMReX_Bittree.H
+0 −3 Src/Extern/SUNDIALS/AMReX_NVector_MultiFab.cpp
+0 −1 Src/Extern/SUNDIALS/AMReX_SUNMemory.H
+0 −3 Src/Extern/SUNDIALS/AMReX_Sundials_Core.H
+72 −40 Src/LinearSolvers/MLMG/AMReX_MLCGSolver.H
+60 −23 Src/LinearSolvers/MLMG/AMReX_MLLinOp.H
+104 −101 Src/LinearSolvers/MLMG/AMReX_MLMG.H
+0 −9 Src/Particle/AMReX_Particle.H
+58 −19 Src/Particle/AMReX_ParticleContainerI.H
+25 −27 Src/Particle/AMReX_ParticleIO.H
+24 −4 Src/Particle/AMReX_ParticleInit.H
+82 −25 Src/Particle/AMReX_ParticleTile.H
+5 −3 Src/Particle/AMReX_ParticleTransformation.H
+21 −1 Src/Particle/AMReX_ParticleUtil.H
+21 −2 Src/Particle/AMReX_StructOfArrays.H
+9 −7 Src/Particle/AMReX_WriteBinaryParticleData.H
+12 −0 Tests/Particles/RedistributeSOA/main.cpp
+1 −1 Tools/CMake/AMReXFlagsTargets.cmake
+10 −0 Tools/CMake/AMReXOptions.cmake
+6 −0 Tools/CMake/AMReXSYCL.cmake
+2 −0 Tools/GNUMake/Make.machines
+16 −3 Tools/Postprocessing/C_Src/particle_compare.cpp

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