This Ansible role is for automated installation of tools from a Tool Shed into Galaxy.

When run, this role will create an execution environment, install ephemeris and invoke the shed-install command to install desired tools into Galaxy. The list of tools to install is provided in files/tool_list.yaml file.

Usage

To use the role, you need to create a playbook and include the role in it. A sample playbook is available here that will get you up and running in minutes.

Variables

Required variables

Warning ! warning ! tool_admin_user name, email, and password are now hardcoded in the python script manage_bootstrap_user.py, for the sake of simplicity. A new api key is simply generated for this user, each the playbook is run.

Optional variables

See defaults/main.yml for the available variables and their defaults.

Control flow variables

The following variables can be set to either yes or no to indicate if the given part of the role should be executed:

• galaxy_tools_install_tools: (default: yes) whether or not to run the tools installation script