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andrasmatyassy committed Sep 25, 2024
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Expand Up @@ -98,9 +98,12 @@ Set `deterministic=False` to generate variable sequences. Control the variabilit

Using high temperatures might result in prediction of DNA sequences that do not translate to the input protein. <br>
Generate multiple sequences by setting `num_sequences` to a value greater than 1.
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**You can use the [inference template](https://github.com/Adibvafa/CodonTransformer/raw/main/src/CodonTransformer_inference_template.xlsx) for batch inference in [Google Colab](https://adibvafa.github.io/CodonTransformer/GoogleColab).**
### Batch Inference
**You can use the [inference template](https://github.com/Adibvafa/CodonTransformer/raw/main/src/CodonTransformer_inference_template.xlsx) to setup your dataset for batch inference in [Google Colab](https://adibvafa.github.io/CodonTransformer/GoogleColab).**
A sample dataset is provided under [\demo](https://github.com/Adibvafa/CodonTransformer/tree/main/demo) . A typical inference might take 1-3 seconds based on available compute.

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Expand All @@ -119,7 +122,7 @@ cd CodonTransformer
pip install -r requirements.txt
```

The package requires `python>=3.9`. The requirements are [availabe here](requirements.txt).
The package requires `python>=3.9`, supports all major operating systems, and takes about 10-30 seconds depending on already installed requirements, [availabe here](requirements.txt).
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