verstion 1.1

SigProfilerExtractor.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: SigProfilerExtractor
-Version: 1.0.20
+Version: 1.1.0
 Summary: Extracts mutational signatures from mutational catalogues
 Home-page: https://github.com/AlexandrovLab/SigProfilerExtractor.git
 Author: S Mishu Ashiqul Islam
@@ -120,7 +120,7 @@ Description: [![Docs](https://img.shields.io/badge/docs-latest-blue.svg)](https:
         | **Decomposition** |  |  |  | 
         |  | **de_novo_fit_penalty** | Float | Takes any positive float. Default is 0.02. Defines the weak (remove) thresh-hold cutoff to assign denovo signatures to a sample. | 
         |  | **nnls_add_penalty** | Float | Takes any positive float. Default is 0.05. Defines the strong (add) thresh-hold cutoff to assign COSMIC signatures to a sample. | 
-        |  | **nnls_remove_penalty** | Float | Takes any positive float. Default is 0.05. Defines the strong (add) thresh-hold cutoff to assign COSMIC signatures to a sample. | 
+        |  | **nnls_remove_penalty** | Float | Takes any positive float. Default is 0.01. Defines the weak (remove) thresh-hold cutoff to assign COSMIC signatures to a sample. | 
         |  | **initial_remove_penalty** | Float | Takes any positive float. Default is 0.05. Defines the initial weak (remove) thresh-hold cutoff to COSMIC assign signatures to a sample. | 
         |  | **refit_denovo_signatures** | Boolean | Default is True. If True, then refit the denovo signatures with nnls. | 
         |  | **make_decomposition_plots** | Boolean | Defualt is True. If True, Denovo to Cosmic sigantures decompostion plots will be created as a part the results. | 

SigProfilerExtractor.egg-info/requires.txt

@@ -4,7 +4,7 @@ torch==1.5.1
 numpy>=1.17.4
 pandas>=0.25.3
 nimfa>=1.1.0
-SigProfilerMatrixGenerator>=1.1.22
+SigProfilerMatrixGenerator>=1.1.23
 sigProfilerPlotting>=1.1.8
 pillow
 statsmodels>=0.9.0

SigProfilerExtractor/version.py

@@ -1,7 +1,7 @@
 
 # THIS FILE IS GENERATED FROM SIGPROFILEREXTRACTOR SETUP.PY
-short_version = '1.0.20'
-version = '1.0.20'
+short_version = '1.1.0'
+version = '1.1.0'
 Update = 'Heirarchy option deleted, clustering deleted and signatures orders by the mutation burden'
 
 

build/lib/SigProfilerExtractor/version.py

@@ -1,7 +1,7 @@
 
 # THIS FILE IS GENERATED FROM SIGPROFILEREXTRACTOR SETUP.PY
-short_version = '1.0.20'
-version = '1.0.20'
+short_version = '1.1.0'
+version = '1.1.0'
 Update = 'Heirarchy option deleted, clustering deleted and signatures orders by the mutation burden'
 
 

setup.py

@@ -8,7 +8,7 @@
 if os.path.exists("dist"):
     shutil.rmtree("dist")
 
-VERSION = '1.0.20'
+VERSION = '1.1.0'
 
 
 with open('README.md') as f:
@@ -33,7 +33,7 @@ def write_version_py(filename='SigProfilerExtractor/version.py'):
           'numpy>=1.17.4', 
           'pandas>=0.25.3', 
           'nimfa>=1.1.0', 
-          'SigProfilerMatrixGenerator>=1.1.22', 
+          'SigProfilerMatrixGenerator>=1.1.23', 
           'sigProfilerPlotting>=1.1.8', 
           'pillow',
           'statsmodels>=0.9.0',