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Update README.md #206

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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -101,7 +101,7 @@ a DBS, SBS, ID, and TSB folder (there will also be a plots folder if this parame

### INPUT FORMAT:

***First six columns are required, and either the column "svclass" (deletion, translocation, tandem-duplication, or inversion) or the columns "strand1" & "strand2" (BRASS convention) must also be present***
***First six columns are required, and either the column "svclass" (deletion, translocation, tandem-duplication, or inversion) or the columns "strand1" & "strand2" (BRASS convention, see https://github.com/cancerit/BRASS/wiki/BEDPE) must also be present***


### Example with SV class present (tsv or csv file):
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**CITATION**

For SBSs, DBSs, and INDELs, please cite the following paper:
**For SBSs, DBSs, and INDELs, please cite the following paper:**

Bergstrom EN, Huang MN, Mahto U, Barnes M, Stratton MR, Rozen SG, and Alexandrov LB (2019) SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events. **BMC Genomics** 20, Article number: 685.
https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6041-2

For SVs and CNVs, please cite the following paper:
**For SVs and CNVs, please cite the following paper:**

Khandekar A, Vangara R, Barnes M, Díaz-Gay M, Abbasi A, Bergstrom EN, Steele CD, Pillay N, and Alexandrov LB (2023) Visualizing and exploring patterns of large mutational events with SigProfilerMatrixGenerator. **BMC Genomics** 24, Article number: 469.
https://doi.org/10.1186/s12864-023-09584-y
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