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Update Makefile.config #8

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Update Makefile.config #8

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15 changes: 8 additions & 7 deletions Makefile.config
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Original file line number Diff line number Diff line change
@@ -1,18 +1,19 @@
# C++ compiler
CCC = g++

# Compiler flags (you probably don't need to change anything here)
CCCFLAGS = -O2 -m64 -std=gnu++0x -Wall
# include directory
CCCINC = -I../Common/ -I/usr/include/bamtools
# library directory and libraries
CCCLIB = -lbamtools

# Include directories
CCCINC = -I../Common/ -I/usr/include/bamtools -I/data/bio/alexeygritsenk/apps/ILOG/cplex/include -I/data/bio/alexeygritsenk/apps/ILOG/concert/include -I/usr/include/ncbi-tools++

# Library directories and libraries
CCCLIB = -lbamtools -lxalgoalignnw -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ltables -L/data/bio/alexeygritsenk/apps/ILOG/cplex/lib/x86-64_sles10_4.1/static_pic -lilocplex -lcplex -L/data/bio/alexeygritsenk/apps/ILOG/concert/lib/x86-64_sles10_4.1/static_pic -lconcert -lm -pthread

# Extra flags. Used for compiling scaffoldOptimizer (it uses the NCBI C++ Toolkit and CPLEX API)
CCEFLAGS = -fPIC -fexceptions -fopenmp -DNDEBUG -DIL_STD
CCEINC = -I/data/bio/alexeygritsenk/apps/ILOG/cplex/include -I/data/bio/alexeygritsenk/apps/ILOG/concert/include -I/usr/include/ncbi-tools++
CCELIB = -lxalgoalignnw -lxobjmgr -lgenome_collection -lseqset -lseqedit -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -ltables -L/data/bio/alexeygritsenk/apps/ILOG/cplex/lib/x86-64_sles10_4.1/static_pic -lilocplex -lcplex -L/data/bio/alexeygritsenk/apps/ILOG/concert/lib/x86-64_sles10_4.1/static_pic -lconcert -lm -pthread

# Do not change anything below unless (you think) you know what you're doing.
# Do not change anything below unless you are familiar with it.
MAKE = make
MD = mkdir
CDIR = ../Common
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