update subsampled lfp description #676
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| # This workflow will install Python dependencies, run tests and lint/formatting - possibly with a variety of Python versions - bump version, re-commit publish to PYPI | |
| # For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
| name: Publish Python package | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| paths-ignore: | |
| - '**.ipynb' | |
| - '**.json' | |
| - '.vscode' | |
| - 'scripts' | |
| - 'tests' | |
| - 'notebooks' | |
| - '**.md' | |
| - '**.yml' | |
| workflow_dispatch: | |
| concurrency: | |
| group: ${{ github.ref }} | |
| cancel-in-progress: ${{ github.ref != 'refs/heads/master' }} | |
| jobs: | |
| package: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.9"] | |
| permissions: write-all | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| token: ${{ secrets.PAT }} | |
| fetch-depth: 0 | |
| fetch-tags: true | |
| - uses: pdm-project/setup-pdm@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| update-python: true | |
| cache: true | |
| - name: Install dependencies | |
| run: | | |
| pdm install -G dev | |
| - name: Test, format, lint | |
| env: | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_DEFAULT_REGION: ${{ secrets.AWS_DEFAULT_REGION }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| DBHUB_API_KEY: ${{ secrets.DBHUB_API_KEY }} | |
| CODE_OCEAN_API_TOKEN: ${{ secrets.CODE_OCEAN_API_TOKEN }} | |
| CODE_OCEAN_DOMAIN: ${{ secrets.CODE_OCEAN_DOMAIN }} | |
| run: | | |
| mkdir .mypy_cache | |
| pdm run prebuild | |
| - name: Bump project version | |
| run: | | |
| pdm run bumpver | |
| - name: Add requirements.txt | |
| run: | | |
| pdm export --without-hashes --prod -o requirements.txt | |
| - name: Pull | |
| # pull in case non-packaged files were changed since job started (packaged | |
| # files would trigger a new job and cancel this one) | |
| run: | | |
| git stash | |
| git pull --rebase | |
| git stash pop | |
| - name: Commit changes | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| message: "Bump [skip actions]" | |
| author_name: Ben Hardcastle | |
| author_email: [email protected] | |
| # if the default github actions bot is used, we can't trigger other | |
| # workflows | |
| - name: Tag commit | |
| run: | | |
| pdm run tag | |
| git push --tags | |
| - name: Publish | |
| run: | | |
| pdm publish | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| update_cache: | |
| needs: package | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.11"] | |
| permissions: write-all | |
| steps: | |
| - name: Launch | |
| continue-on-error: true | |
| env: | |
| DBHUB_API_KEY: ${{ secrets.DBHUB_API_KEY }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_DEFAULT_REGION: ${{ secrets.AWS_DEFAULT_REGION }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| CODE_OCEAN_API_TOKEN: ${{ secrets.CODE_OCEAN_API_TOKEN }} | |
| CODE_OCEAN_DOMAIN: ${{ secrets.CODE_OCEAN_DOMAIN }} | |
| run: | | |
| pip install npc_lims | |
| run_session_cache_capsule |