Allen Institute for Neural Dynamics
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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segmentation-skeleton-metrics
segmentation-skeleton-metrics PublicA Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentatio…
Python 6
Repositories
- aind-exaspim-soma-detection Public
A Python package for detecting somas in ExaSPIM image datasets. Includes tools for image preprocessing and deep learning-based classification and training.
AllenNeuralDynamics/aind-exaspim-soma-detection’s past year of commit activity - ephys-sorting-manual-curation Public
Repository for collecting manual curation data for spike-sorting
AllenNeuralDynamics/ephys-sorting-manual-curation’s past year of commit activity - exaspim-control Public
AllenNeuralDynamics/exaspim-control’s past year of commit activity - aind-watchdog-service Public
Data staging service that prepares acquistion data for cloud upload to Amazon S3 and Code Ocean processing.
AllenNeuralDynamics/aind-watchdog-service’s past year of commit activity - Aind.Behavior.Services Public
A repository containing code for data acquisition and processing for AIND behavior rigs.
AllenNeuralDynamics/Aind.Behavior.Services’s past year of commit activity - dynamicrouting-decoding Public
AllenNeuralDynamics/dynamicrouting-decoding’s past year of commit activity - dynamicrouting-processing-template Public template
Template for capsules that process one or all NWB files in an attached "datacube" asset
AllenNeuralDynamics/dynamicrouting-processing-template’s past year of commit activity
