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The great migration #1

Merged
merged 15 commits into from
Jan 23, 2024
Merged

The great migration #1

merged 15 commits into from
Jan 23, 2024

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jkanche
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@jkanche jkanche commented Jan 20, 2024

consider exporting the utils from dolomite-base: especially the vector readers and writers.

@jkanche jkanche marked this pull request as draft January 20, 2024 20:10
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jkanche commented Jan 20, 2024

@LTLA , trying to understand what the actual error is in the tests. This is for seqlengths

> ~/D/p/a/dolomite-ranges on migrationpython
Python 3.9.18 (main, Sep 11 2023, 13:41:44)
[GCC 11.2.0] :: Anaconda, Inc. on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> path = "/tmp/tmpi8x676v7/seqinfo"
>>> import h5py
>>> f = h5py.File(path + "/info.h5", "r")
>>> f["sequence_information"]["length"]
<HDF5 dataset "length": shape (3,), type "<i4">
>>>

@jkanche jkanche marked this pull request as ready for review January 22, 2024 02:10
@jkanche jkanche requested a review from LTLA January 22, 2024 02:35
@jkanche jkanche self-assigned this Jan 22, 2024
@jkanche jkanche merged commit b8c1545 into master Jan 23, 2024
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@jkanche jkanche deleted the migration branch January 23, 2024 23:57
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