fixed up ImagingSession.save

xnat_ingest/session.py

@@ -4,7 +4,6 @@
 import logging
 import os.path
 import subprocess as sp
-from copy import deepcopy
 from functools import cached_property
 import shutil
 import yaml
@@ -384,16 +383,16 @@ def save(self, save_dir: Path) -> "ImagingSession":
                 # If data is not already in the save directory, copy it there
                 if not fileset.parent.is_relative_to(resource_dir):
                     resource_dir.mkdir(parents=True, exist_ok=True)
-                    fileset_copy = fileset.copy(
+                    fileset = fileset.copy(
                         resource_dir, mode=fileset.CopyMode.hardlink_or_copy
                     )
-                    self.scans[scan.id].resources[resource_name] = fileset_copy
+                    self.scans[scan.id].resources[resource_name] = fileset
                 resources_dict[resource_name] = {
                     "datatype": to_mime(fileset, official=False),
                     "fspaths": [
                         # Ensure it is a relative path using POSIX forward slashes
                         str(p.relative_to(save_dir)).replace("\\", "/")
-                        for p in fileset_copy.fspaths
+                        for p in fileset.fspaths
                     ],
                 }
             dct["scans"][scan.id] = {