v4.2.0

This is release reflects revisions from the JOSS review process: openjournals/joss-reviews#6839

What's Changed

• Update mkdocs.yml by @younesStrittmatter in #651
• fix: fixed import statement for falsification sampler by @musslick in #658
• docs: added note for theorist contributors to consider input parameters as … by @musslick in #659
• Doc/closed loop example bandit task by @younesStrittmatter in #661
• Update mkdocs.yml by @younesStrittmatter in #665
• docs: added complete closed-loop example for psychophysics study by @musslick in #668
• docs: fixed links in basic tutorial notebooks by @musslick in #670
• docs: fixed missing import statement in notebooks by @musslick in #677
• docs: fixed links and added sudo hints by @musslick in #676
• docs: minor updates to documentation by @musslick in #671
• docs: reorganized behavioral experiment runner doc by @musslick in #675
• docs: adapted new structure for states and workflows by @musslick in #674
• docs: fixed file naming in examples by @musslick in #673
• docs: added cheatsheet by @musslick in #672
• doc: Update prolific.md typo fix by @musslick in #692
• docs: add experiment runner firebase prolific to code reference by @younesStrittmatter in #691
• 689 doc as soon as new version of sweetbean is released update closed loop example bandit task by @younesStrittmatter in #690
• updated CITATION.cff

Full Changelog: v4.1.0...v4.2.0

What's Changed

• Update mkdocs.yml by @younesStrittmatter in #651
• fix: fixed import statement for falsification sampler by @musslick in #658
• docs: added note for theorist contributors to consider input parameters as … by @musslick in #659
• Doc/closed loop example bandit task by @younesStrittmatter in #661
• Update mkdocs.yml by @younesStrittmatter in #665
• docs: added complete closed-loop example for psychophysics study by @musslick in #668
• docs: fixed links in basic tutorial notebooks by @musslick in #670
• docs: fixed missing import statement in notebooks by @musslick in #677
• docs: fixed links and added sudo hints by @musslick in #676
• docs: minor updates to documentation by @musslick in #671
• docs: reorganized behavioral experiment runner doc by @musslick in #675
• docs: adapted new structure for states and workflows by @musslick in #674
• docs: fixed file naming in examples by @musslick in #673
• docs: added cheatsheet by @musslick in #672
• doc: Update prolific.md typo fix by @musslick in #692
• docs: add experiment runner firebase prolific to code reference by @younesStrittmatter in #691
• 689 doc as soon as new version of sweetbean is released update closed loop example bandit task by @younesStrittmatter in #690
• update: citation file by @musslick in #695

Full Changelog: v4.1.0...v4.2.0

v4.1.0

What's Changed

• Chore make synthetic import consistence by @younesStrittmatter in #599
• rebase by @younesStrittmatter in #600
• Update CITATION.cff by @hollandjg in #602
• Doc add announcement banner by @younesStrittmatter in #601
• Update README.md by @younesStrittmatter in #605
• doc: added doi by @musslick in #606
• doc: add code references for synthetic runners by @younesStrittmatter in #604
• added doi by @musslick in #607
• rename experiment_runner to run in abstract equation runner by @younesStrittmatter in #610
• docs: add CLI introduction, State and Variable user guide entries by @hollandjg in #612
• docs: restructure tutorials and examples by @hollandjg in #613
• JOSS manuscript by @musslick in #618
• update upload artifact in draft-pdf workflow by @hollandjg in #620
• fixed minor mistakes by @musslick in #619
• Doc/readme joss update by @musslick in #623
• docs: remove distinction between poolers and samplers in experimentalist.md by @benwandrew in #611
• Feat/experimentalist prediction filter by @younesStrittmatter in #624
• fix: Fixed broken links and table of contents by @chadcwilliams in #616
• Doc/contributor update jgh by @hollandjg in #629
• docs: updated contributor guide by @musslick in #627
• Remove all-synthetic from optional dependencies by @varun646 in #631
• docs: add equation runner to examples and code reference by @younesStrittmatter in #634
• docs: fix Equation Discovery tutorial (dependent on new release of au… by @younesStrittmatter in #636
• Update pyproject.toml by @younesStrittmatter in #638

New Contributors

• @varun646 made their first contribution in #631

Full Changelog: v4.0.0...v4.1.0

What's Changed

• Chore make synthetic import consistence by @younesStrittmatter in #599
• rebase by @younesStrittmatter in #600
• Update CITATION.cff by @hollandjg in #602
• Doc add announcement banner by @younesStrittmatter in #601
• Update README.md by @younesStrittmatter in #605
• doc: added doi by @musslick in #606
• doc: add code references for synthetic runners by @younesStrittmatter in #604
• added doi by @musslick in #607
• rename experiment_runner to run in abstract equation runner by @younesStrittmatter in #610
• docs: add CLI introduction, State and Variable user guide entries by @hollandjg in #612
• docs: restructure tutorials and examples by @hollandjg in #613
• JOSS manuscript by @musslick in #618
• update upload artifact in draft-pdf workflow by @hollandjg in #620
• fixed minor mistakes by @musslick in #619
• Doc/readme joss update by @musslick in #623
• docs: remove distinction between poolers and samplers in experimentalist.md by @benwandrew in #611
• Feat/experimentalist prediction filter by @younesStrittmatter in #624
• fix: Fixed broken links and table of contents by @chadcwilliams in #616
• Doc/contributor update jgh by @hollandjg in #629
• docs: updated contributor guide by @musslick in #627
• Remove all-synthetic from optional dependencies by @varun646 in #631
• docs: add equation runner to examples and code reference by @younesStrittmatter in #634
• docs: fix Equation Discovery tutorial (dependent on new release of au… by @younesStrittmatter in #636
• Update pyproject.toml by @younesStrittmatter in #638
• feat: add bandit-random sampler by @younesStrittmatter in #640

New Contributors

• @varun646 made their first contribution in #631

Full Changelog: v4.0.0...v4.1.0

What's Changed

• Chore make synthetic import consistence by @younesStrittmatter in #599
• rebase by @younesStrittmatter in #600
• Update CITATION.cff by @hollandjg in #602
• Doc add announcement banner by @younesStrittmatter in #601
• Update README.md by @younesStrittmatter in #605
• doc: added doi by @musslick in #606
• doc: add code references for synthetic runners by @younesStrittmatter in #604
• added doi by @musslick in #607
• rename experiment_runner to run in abstract equation runner by @younesStrittmatter in #610
• docs: add CLI introduction, State and Variable user guide entries by @hollandjg in #612
• docs: restructure tutorials and examples by @hollandjg in #613
• JOSS manuscript by @musslick in #618
• update upload artifact in draft-pdf workflow by @hollandjg in #620
• fixed minor mistakes by @musslick in #619
• Doc/readme joss update by @musslick in #623
• docs: remove distinction between poolers and samplers in experimentalist.md by @benwandrew in #611
• Feat/experimentalist prediction filter by @younesStrittmatter in #624
• fix: Fixed broken links and table of contents by @chadcwilliams in #616
• Doc/contributor update jgh by @hollandjg in #629
• docs: updated contributor guide by @musslick in #627
• Remove all-synthetic from optional dependencies by @varun646 in #631
• docs: add equation runner to examples and code reference by @younesStrittmatter in #634
• docs: fix Equation Discovery tutorial (dependent on new release of au… by @younesStrittmatter in #636
• Update pyproject.toml by @younesStrittmatter in #638
• feat: add bandit-random sampler by @younesStrittmatter in #640

New Contributors

• @varun646 made their first contribution in #631

Full Changelog: v4.0.0...v4.1.0

v4.0.0

What's Changed

• docs: add MIT license badge to README by @benwandrew in #552
• Doc/restructuring general tutorial by @chadcwilliams in #514
• docs: Add Notebook Tutorial for Equation Discovery by @TheLemonPig in #568
• docs: make a documentation page outlining the terminology based on the spreadsheet by @benwandrew in #572
• docs: updated docs for installation, theorists, experiment runners, and experimentalists by @chadcwilliams in #571
• docs: fix broken links by @younesStrittmatter in #576
• docs: update mkdocs settings to allow copying blocks of code / downloading URL-based snippets by @hollandjg in #583
• 569 revise tutorial suggestions john by @hollandjg in #587
• docs: update workflow documentation by @hollandjg in #586
• 544 update dependencies based on new packages post hackathon by @younesStrittmatter in #588
• add optional dependency: abstract equation by @younesStrittmatter in #593
• Docs nav fix after 400 by @younesStrittmatter in #591
• Docs: Revised basic tutorials by @chadcwilliams in #584
• fix: Updated nav for basic tutorials by @chadcwilliams in #595
• doc: added citation info by @musslick in #580
• docs: updated README by @musslick in #578

New Contributors

• @chadcwilliams made their first contribution in #514

Full Changelog: v3.1.1...v4.0.0

v3.1.1

What's Changed

• docs: add functional tutorial by @hollandjg in #518
• docs: added logos for funding sources by @musslick in #525
• doc: fixes funding logo position and size by @musslick in #528
• docs: add details on publishing via Github Actions by @younesStrittmatter in #531
• docs: add badges by @hollandjg in #532
• docs: add note to contributor documentation for updating and releasing new versions of contributed modules. by @benwandrew in #535
• ci: standardize repository issue labels with label syncer by @benwandrew in #534
• docs: update license to MIT by @benwandrew in #537
• feat: add leverage sampler by @benwandrew in #539
• docs: create lists of implemented components by @benwandrew in #540

Full Changelog: v3.1.0...v3.1.1

v3.1.0

What's Changed

• docs: add white bg to overview by @younesStrittmatter in #428
• Docs add tutorials by @younesStrittmatter in #429
• chore: remove IDE files by @hollandjg in #431
• Revamp motivation section of top-level index.md by @benwandrew in #432
• ci: add trigger to publish every night by @benwandrew in #438
• Make theorist language more general by @benwandrew in #440
• doc: modified main contributor doc by @musslick in #441
• doc: theorist module contribution by @musslick in #442
• Update mkdocs.yml by @younesStrittmatter in #443
• Update mkdocs.yml by @benwandrew in #444
• Doc/generalize tutorials by @musslick in #447
• Update theorist-module.md by @benwandrew in #448
• Doc: extension of contribution documentation by @musslick in #445
• update doc by @younesStrittmatter in #449
• Update mkdocs.yml by @younesStrittmatter in #451
• 446 add documentation for experiment runner module contribution by @younesStrittmatter in #450
• Add content to index.md for tutorials by @benwandrew in #454
• 455 docs make folder structure consitent with nav in mkdocs.yml by @younesStrittmatter in #456
• docs: change header case by @younesStrittmatter in #458
• docs: update button to open in colab by @hollandjg in #472
• Docs/remove deprecated plugin by @hollandjg in #473
• docs: add links to tutorials on landing page for documentation by @benwandrew in #463
• Docs: add code reference by @hollandjg in #471
• docs: update documentation to reflect new structure with code references by @younesStrittmatter in #477
• Elaborate on PR process for contributions by @benwandrew in #475
• docs: add nb-clean pre-commit-hook by @hollandjg in #480
• docs: attach images to notebooks by @hollandjg in #474
• build: remove empty src directory – replace with explicit instruction… by @hollandjg in #481
• docs: add documentation on how to set up a online experiment via Fire… by @younesStrittmatter in #479
• docs: test building before merge by @hollandjg in #486
• Clean up documentation headings globally in parent package by @benwandrew in #485
• docs: add mention of style guide in top-level of contributor guide by @benwandrew in #489
• ci: add push-to-main-branch as event to trigger publishing documentation by @benwandrew in #491
• 484 everywhere in the documentation where we describe the venv setup including contributor setup we should add that venv should specify the python version eg 39 by @younesStrittmatter in #487
• docs: strong title cases in all headings by @younesStrittmatter in #493
• doc: fixed minor typos by @musslick in #494
• docs: include tutorial for online experiment by @younesStrittmatter in #495
• Update index.md by @younesStrittmatter in #498
• Update Theorist.ipynb by @younesStrittmatter in #499
• docs: update page names in tutorials by @benwandrew in #500
• feat: added mixture experimentalist contribution by @blinodelka in #461
• 503 fix broken links by @younesStrittmatter in #504
• fix: fixed unordered lists by @musslick in #508
• docs: added introductory tutorial by @musslick in #507
• doc: re-arranged outline in contributor guide by @musslick in #509
• docs: add installation page to main documentation by @benwandrew in #505

New Contributors

• @younesStrittmatter made their first contribution in #428
• @blinodelka made their first contribution in #461

Full Changelog: v3.0.1...v3.1.0

v3.0.1

What's Changed

• docs: update image path by @hollandjg in #425
• docs: add site url (fixes links) by @hollandjg in #426

Full Changelog: v3.0.0...v3.0.1

v3.0.0

What's Changed

• docs: update documentation building script to use poetry for installing dependencies by @hollandjg in #344
• chore(deps-dev): bump mkdocs-material from 9.1.5 to 9.1.6 by @dependabot in #345
• chore(deps-dev): bump pytest from 7.2.2 to 7.3.0 by @dependabot in #346
• docs: adjusted mkdocs theme by @musslick in #348
• doc/revised overview by @musslick in #351
• chore(deps-dev): bump pytest from 7.3.0 to 7.3.1 by @dependabot in #352
• refactor: remove outdated plot_utils for darts by @hollandjg in #350
• chore(deps): bump pandas from 2.0.0 to 2.0.1 by @dependabot in #353
• chore(deps-dev): bump mkdocs-material from 9.1.6 to 9.1.7 by @dependabot in #354
• chore(deps): bump imageio from 2.27.0 to 2.28.0 by @dependabot in #356
• chore(deps): bump numpy from 1.24.2 to 1.24.3 by @dependabot in #355
• chore(deps-dev): bump mkdocs-material from 9.1.7 to 9.1.8 by @dependabot in #377
• chore(deps-dev): bump ipython from 8.12.0 to 8.12.1 by @dependabot in #378
• chore(deps-dev): bump mkdocs-gen-files from 0.4.0 to 0.5.0 by @dependabot in #379
• chore(deps): bump imageio from 2.28.0 to 2.28.1 by @dependabot in #380
• chore(deps-dev): bump mkdocs-material from 9.1.8 to 9.1.10 by @dependabot in #390
• chore(deps-dev): bump pre-commit from 3.2.2 to 3.3.1 by @dependabot in #391
• chore(deps-dev): bump mkdocstrings-python from 0.9.0 to 0.10.1 by @dependabot in #392
• chore(deps-dev): bump ipython from 8.12.1 to 8.12.2 by @dependabot in #393
• chore(deps-dev): bump mkdocs-material from 9.1.10 to 9.1.12 by @dependabot in #404
• chore(deps-dev): bump mkdocstrings-python from 0.10.1 to 1.0.0 by @dependabot in #405
• chore(deps): bump pymdown-extensions from 9.10 to 10.0 by @dependabot in #407
• chore(deps): bump sympy from 1.11.1 to 1.12 by @dependabot in #406
• chore(deps-dev): bump pre-commit from 3.3.1 to 3.3.2 by @dependabot in #411
• chore(deps-dev): bump mkdocs-material from 9.1.12 to 9.1.14 by @dependabot in #412
• chore(deps): bump requests from 2.28.2 to 2.31.0 by @dependabot in #413
• chore(deps): bump tornado from 6.2 to 6.3.2 by @dependabot in #418
• chore(deps): bump imageio from 2.28.1 to 2.30.0 by @dependabot in #419
• chore(deps-dev): bump mkdocstrings-python from 1.0.0 to 1.1.0 by @dependabot in #420
• chore(deps): bump pandas from 2.0.1 to 2.0.2 by @dependabot in #421
• refactor!: convert this into the "parent" package for autora, without code by @hollandjg in #371

Full Changelog: v2.4.1...v3.0.0

v3.0.0c3

docs: remove tutorial block

v3.0.0c2

docs: update path to image on readme

v3.0.0a18

docs: simplify setup guide