Changed base likelihood descritptor for embedded lms #583
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| # This workflow runs on a `push` to any branch | |
| name: CI | |
| on: | |
| workflow_dispatch: | |
| push: | |
| schedule: | |
| - cron: '0 1 * * 6' # weekly run at 01:00 UTC on Saturday, dependency check | |
| jobs: | |
| # Lint and type checking | |
| lint_and_type_check: | |
| name: Lint and type check | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 5 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python "3.10" | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| pip install pre-commit | |
| - name: Lint and type check | |
| run: | | |
| pre-commit run --all-files --verbose --show-diff-on-failure | |
| # Unit test and coverage | |
| test: | |
| name: Test on Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| needs: [ lint_and_type_check ] | |
| strategy: | |
| matrix: | |
| python-version: [ "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install package with dependencies | |
| run: | | |
| pip install .[tests] | |
| - name: Test with pytest | |
| run: | | |
| # grab the coverage output and also print it to the sreen | |
| coverage run -m pytest | |
| COVERAGE_REPORT=$(coverage report -m | tee /dev/stderr) | |
| # extract the percentage of the total coverage, e.g. `75%` | |
| COVERAGE_PCT=$(echo $COVERAGE_REPORT | \ | |
| grep -oP "TOTAL\s+\d+\s+\d+\s+(\d+%)" | grep -oP "\d+%") | |
| # get only the coverage number without the percentage symbol | |
| COVERAGE_NUM=$(echo $COVERAGE_PCT | grep -oP "\d+") | |
| # get an indicative color | |
| if (( COVERAGE_NUM <= 50 )); then | |
| COVERAGE_COL="red" | |
| elif (( COVERAGE_NUM <= 60 )); then | |
| COVERAGE_COL="orange" | |
| elif (( COVERAGE_NUM <= 70 )); then | |
| COVERAGE_COL="yellow" | |
| elif (( COVERAGE_NUM <= 80 )); then | |
| COVERAGE_COL="yellowgreen" | |
| elif (( COVERAGE_NUM <= 90 )); then | |
| COVERAGE_COL="green" | |
| else | |
| COVERAGE_COL="brightgreen" | |
| fi | |
| # active branch name | |
| BRANCH_NAME=$(echo ${GITHUB_REF#refs/heads/}) | |
| # add them to the github env for later usage | |
| echo "COVERAGE_PCT=$(echo $COVERAGE_PCT)" >> $GITHUB_ENV | |
| echo "COVERAGE_COL=$(echo $COVERAGE_COL)" >> $GITHUB_ENV | |
| echo "BRANCH_NAME=$(echo $BRANCH_NAME)" >> $GITHUB_ENV | |
| # Upload the coverage value to gist only once | |
| - if: ${{ matrix.python-version == '3.12' }} | |
| name: Upload coverage to gist | |
| uses: schneegans/[email protected] | |
| with: | |
| auth: ${{ secrets.GIST_SECRET }} | |
| gistID: 5eb707145cc7d75de25b43d25b13c972 | |
| filename: probeye_${{ env.BRANCH_NAME }}_coverage.json | |
| label: coverage | |
| message: ${{ env.COVERAGE_PCT }} | |
| color: ${{ env.COVERAGE_COL }} | |
| # Run tests with the latest available version of all dependencies | |
| # these latest versions might be beyond the versions specified in `setup.cfg` | |
| # the goal of this job to catch errors with these latest versions | |
| # [only for `main`]. Ideally, if this job succeeded with at least one major | |
| # version number increased then the `setup.cfg` would be updated. | |
| test_with_latest: | |
| name: Test with latest dependencies on Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| if: | | |
| github.ref == 'refs/heads/main' && | |
| github.repository == 'BAMresearch/probeye' && | |
| github.event_name == 'schedule' | |
| needs: [ lint_and_type_check ] | |
| strategy: | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install package with latest dependencies | |
| run: | | |
| python probeye/_setup_cfg.py | |
| pip install .[tests] | |
| - name: Test with pytest | |
| run: | | |
| pytest | |
| # Release to GitHub and PyPi [only for `main`] | |
| #release: | |
| # name: Semantic Release | |
| # runs-on: ubuntu-latest | |
| # if: github.ref == 'refs/heads/main' && github.repository == 'BAMresearch/probeye' | |
| # concurrency: release | |
| # needs: [ lint_and_type_check, test ] | |
| # steps: | |
| # - uses: actions/checkout@v2 | |
| # with: | |
| # fetch-depth: 0 | |
| # - name: Fetch main | |
| # run: | | |
| # git fetch --prune origin +refs/heads/main:refs/remotes/origin/main | |
| # - name: Python semantic release | |
| # uses: relekang/python-semantic-release@master | |
| # with: | |
| # github_token: ${{ secrets.TOKEN_GITHUB }} | |
| # pypi_token: ${{ secrets.PYPI_TOKEN }} |