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Add pileup process to pipeline#49

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jpalmer37 wants to merge 4 commits intomainBCCDC-PHL/fluviewer-nf:mainfrom add-pileupBCCDC-PHL/fluviewer-nf:add-pileupCopy head branch name to clipboard

+298-2

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Commits on Dec 31, 2024

• added make_pileup and plot_pileup scripts

  jpalmer37

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  7e13c37

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Commits on Jan 2, 2025

• make scripts executable

  jpalmer37

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  4e78933

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• added pileup steps to pipeline

  jpalmer37

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  c9151a1

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Commits on Jan 8, 2025

• move pysam dependency to the base conda environment

  jpalmer37

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  d46c808

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