Automatically Scale Dicom Image's #50
Open
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Overview
When the valid fields are provided we should prefer to apply the provided scaling information at time of conversion from dcm to itk. Most of the time there is no scaling information provided and no scaling is done.
Implementation
When calling the
get_itk_imagefunction we check to see if there are the appropriate scaling dicom headersIt then extracts the scaling information out of the provided headers and applies them to the newly generated ITK image
Testing
This was manually tested on over 800 prostate studies with promising results.
There are No Unit tests as of yet
Problems Faced
None
Notes
For more information please refer here