0.2.0

What's Changed

Highlight: chirho.dynamical

This release includes the first version of a new module chirho.dynamical that extends ChiRho's semantics for causal and counterfactual reasoning to continuous-time dynamical systems. See the tutorial for more details.

Full list of changes

• Adding undo_split and a test thereof (+small lint) by @rfl-urbaniak in #264
• Replace Preemptions handler implementation by @eb8680 in #250
• Ru consequent differs by @rfl-urbaniak in #268
• Minor fix to formatting of code snippets in documentation by @SamWitty in #285
• fix typo the the on Readme by @zenna in #300
• Adding helper function for generating stochastic interventions with approximately uniform distributions. by @rfl-urbaniak in #294
• SearchForCause effect handler with tests thereof by @rfl-urbaniak in #297
• Clean up random_intervention tests and docs by @eb8680 in #306
• Revise CI yml file to run tests in parallel by @SamWitty in #345
• Operations and Handlers for Dynamical Systems by @SamWitty in #241
• Separate simulate from simulate_to_interruption by @SamWitty in #356
• Remove eps from core dynamics module, instead relying on backend-specific implementations to handle time collisions by @SamWitty in #358
• Add error handling and warning when interruption is outside of simulate start and end time by @SamWitty in #359
• Add shallow effect handler base class by @eb8680 in #360
• adding ExplainCauses by @rfl-urbaniak in #362
• Fix bugged interaction between LogTrajectory and Interruption when times collide by @SamWitty in #363
• Fixed SDID bug by @agrawalraj in #364
• Separate cond_n and scatter_n from cond and scatter by @eb8680 in #374
• Make State a type alias rather than a subtype by @eb8680 in #375
• Simplify and speed up InterruptionEventLoop by @eb8680 in #361
• Speed up parallelized CI by @eb8680 in #378
• One-sided runtime check of whether a dynamics instance satisfies assumptions of a solver by @SamWitty in #332
• Update tutorial_i.ipynb by @djinnome in #383
• Add linting actions for Python 3.9 and 3.10 by @eb8680 in #387
• Rename DoMessenger and ConditionMessenger query handlers by @eb8680 in #389
• Add staging-* to CI build by @SamWitty in #391
• Merge InterruptionEventLoop into Solver by @eb8680 in #395
• Make interruption application a normal function call by @eb8680 in #399
• Minor update to ChiRho tutorial to remove unnecessary to_event by @SamWitty in #406
• adding notebook tests by @rfl-urbaniak in #308
• Fix time collision bug in LogTrajectory by @SamWitty in #397
• Remove deprecated event_loop module from Sphinx by @eb8680 in #426
• Add CONTRIBUTING to sphinx docs by @eb8680 in #425
• Revise basic SIR tutorial by @SamWitty in #377
• Mention dynamical systems module in README by @eb8680 in #435
• Make State into a type alias of Mapping by @eb8680 in #433
• Add dynamical requirements to test requirements by @eb8680 in #434
• Fix header formatting in dynamical_intro by @eb8680 in #436
• Add documentation for dynamical.ops and dynamical.handlers by @azane in #439
• Add a generic on() operation to dynamical by @eb8680 in #438
• Bump version to 0.2.0 by @eb8680 in #452
• Propapagate type aliases through sphinx by @SamWitty in #453

Full Changelog: 0.1.0...0.2.0

0.1.0

What's Changed

• Add an effect handler for inserting factor statements by @eb8680 in #238
• Add a BiasedPreemptions handler by @eb8680 in #239
• Updated copyright on docs to 2023 by @SamWitty in #254
• pin sphinx version to 7.1.2 to fix docs building by @SamWitty in #256
• Fix docs deployment to GH-pages by pinning sphinx_rtd_theme to 1.3.0 by @SamWitty in #262
• Fix inference in backdoor adjustment example by @eb8680 in #258
• Fixed small typo in README by @agrawalraj in #267
• Make example documentation headers consistently formatted by @SamWitty in #271
• Make tutorial run end to end by @agrawalraj in #274
• Single-Cell RNA Seq Example by @agrawalraj in #265
• Document counterfactual operations and handlers by @SamWitty in #275
• Add RNAseq example to readme and docs by @eb8680 in #277
• Fix docstring propagation in counterfactual ops by @eb8680 in #278
• Fix TOC link for single RNA seq example notebook by @agrawalraj in #280
• Bump version to 0.1.0 by @eb8680 in #279

Full Changelog: 0.1.0-alpha2...0.1.0

0.1.0-alpha2

Pre-release with several new features, examples and fixes:

• chirho.counterfactual.ops.preempt for causality and explanation by @rfl-urbaniak @eb8680 #142
• chirho.observational.handlers.cut for robust inference by @agrawalraj #229
• Synthetic difference-in-differences example by @agrawalraj #229
• DR learner example by @agrawalraj #229
• Bugfixes by @djinnome @SamWitty @azane

0.1.0-alpha1

Alpha release incorporating new counterfactual implementation