2024-Hydra-calibration-paper

This repository contains scripts accompying the paper.

To run the scripts, first install BattMo according to the instructions on https://github.com/BattMoTeam/BattMo. Then modify the startup.m file in this repository to point to the directory where you installed BattMo.

There are three main scripts:

• runEquilibriumCalibration.m for performing the calibration under equilibrium assumption. This script saves the calibrated parameters to disk as a json file for inspection and later use.

• runHighRateCalibration.m performs the high-rate calibration. This will take a few minutes to run. It requires the parameters from runEquilibriumCalibration. The script also saves the calibrated parameters to disk in json format.

• runValidation.m uses both sets of calibrated parameters, and runs and compares the P2D model with the experimental results at the provided rates.