Benchmark Models PEtab v2024.10.15

What's Changed

• Fix pre-commit config by @dweindl in #187
• Add links to SBML4Humans for model inspection by @dweindl in #186
• README how to cite by @dilpath in #185
• Require recent libpetab by @dweindl in #188
• Fixed wrong reference to research article from Laske model by @C-Peiter in #173
• Update README by @dilpath in #189
• update Boehm parameters table by @m-philipps in #190
• fix Isensee model visualization spec by @plakrisenko in #192
• Isensee visualization fix by @plakrisenko in #193
• add benchmark collection references by @plakrisenko in #194
• Add model Raia_CancerResearch2011 by @m-philipps in #191
• another Isensee visualization fix by @plakrisenko in #196
• Fix RaiaCancerResearch2011 by @m-philipps in #197
• one more Isensee visualization fix by @plakrisenko in #198
• Fix Froehlich_CellSystems2018 ref by @dilpath in #204
• Update readme table automatically by @dilpath in #205
• Checklist for new submissions by @dilpath in #206
• Fix PR template; remove duplicated contributing info by @dilpath in #207
• Add Lang_PLOSComputBiol2024 by @paulflang in #202
• Fix #212, annotation fix invalid sbml Lang by @matthiaskoenig in #213
• removing empty annotations by @matthiaskoenig in #215
• Fix dataset id in Schwen_PONE2014 by @m-philipps in #216
• Add get_problem_yaml_path by @dweindl in #223
• Require newer PEtab, use petab.v1 by @dweindl in #225
• Fix visualization specification for Zhao. by @stephanmg in #217
• Bertozzi_PNAS2020: update to match Table 1 of paper by @dilpath in #222
• Update Lang_PLOSComputBiol2024 to fix petablint errors by @dilpath in #228
• GHA: Enable dependabot for action upgrades by @dweindl in #224
• Bump actions/checkout from 2 to 4 by @dependabot in #231
• Bump actions/setup-python from 1 to 5 by @dependabot in #230
• Fix tsv format in parameters_Schwen_PONE2014.tsv by @dweindl in #234
• Consolidate scripts and python package by @dweindl in #238
• Fix parameter ID typo in Giordano_Nature2020 by @dweindl in #237
• Fix Fiedler_BMCSystBiol2016 ID by @m-philipps in #240
• Use setuptools_scm for package versions by @dweindl in #243

New Contributors

• @m-philipps made their first contribution in #190
• @paulflang made their first contribution in #202
• @matthiaskoenig made their first contribution in #213
• @stephanmg made their first contribution in #217
• @dependabot made their first contribution in #231

Full Changelog: v2023.07.17...v2024.10.15